BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475572
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00280.1 | Symbols: PSBC | photosystem II reaction center pr... 2590 0.0
ATCG00270.1 | Symbols: PSBD | photosystem II reaction center pr... 99.0 1e-19
> ATCG00280.1 | Symbols: PSBC | photosystem II reaction center
protein C | chrC:33720-35141 FORWARD LENGTH=1422
Length=1422
Score = 2590 bits (1402), Expect = 0.0
Identities = 1414/1420 (99%), Gaps = 0/1420 (0%)
Strand=Plus/Plus
Query 1 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACT 60
Query 61 TTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCC 120
Query 121 CGACTTATCAATTTATCTGGTAAACTATTGGGAGCTCATGTAGCCCATGCCGGATTAATC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CGACTTATCAATTTATCTGGTAAACTTTTGGGAGCTCATGTAGCCCATGCCGGATTAATC 180
Query 181 GTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCCCATTTTGTACCCGAAAAGCCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCCCATTTTGTACCTGAAAAGCCC 240
Query 241 ATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCCACTTTAGGATGGGGGGTAGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCCACTTTAGGATGGGGGGTAGGT 300
Query 301 CCTGGGGGAGAAGTTATAGACACCTTTCCGTACTTTGTATCTGGAGTACTTCACTTAATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTGGGGGAGAAGTTATAGACACCTTTCCGTACTTTGTATCTGGAGTACTTCACTTAATT 360
Query 361 TCTTCTGCAGTTTTGGGCTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAAACTCTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTTCTGCAGTTTTGGGCTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAAACTCTT 420
Query 421 GAAGAATCTTTTCCCTTTTTCGGTTATGTATGGAAAGATAGAAATAAAATGACCACCATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGAATCTTTTCCCTTTTTCGGTTATGTATGGAAAGATAGAAATAAAATGACCACCATT 480
Query 481 TTGGGTATTCACTTAATTTTGTTAGGTGTAGGTGCCTTTCTTCTAGTATTCAAGGCTCTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGGTATTCACTTAATTTTGTTAGGTGTAGGTGCCTTTCTTCTAGTATTCAAGGCTCTC 540
Query 541 TATTTTGGGGGCGTATATGATACCTGGGCTCCGGGAgggggggATGTAAGAAAAATTACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATTTTGGGGGCGTATATGATACCTGGGCTCCGGGAGGGGGGGATGTAAGAAAAATTACA 600
Query 601 AACTTGACTCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCCTTTGGGGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACTTGACTCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCCTTTGGGGGA 660
Query 661 GAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAATTGGAGGGCATGTATGGTTA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAATTGGAGGACATGTATGGTTA 720
Query 721 GGTTCCATTTGTATATTTGGTGGAATCTGGCATATCTTAACCAAGCCTTTTGCATGGGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTTCCATTTGTATATTTGGTGGAATCTGGCATATCTTAACCAAGCCTTTTGCATGGGCT 780
Query 781 CGCCGCGCACTTGTATGGTCTGGGGAGGCTTACTTGTCTTATAGTTTAGCTGCTTTATCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGCCGCGCACTTGTATGGTCTGGGGAGGCTTACTTGTCTTATAGTTTAGCTGCTTTATCT 840
Query 841 GTTTGTGGTTTCATTGCTTGTTGTTTTGTCTGGTTTAATAATACCGCTTACCCTAGTGAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTTGTGGTTTCATTGCTTGTTGTTTTGTCTGGTTTAATAATACCGCTTACCCTAGTGAG 900
Query 901 TTTTACGGACCTACGGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTTACGGACCTACGGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGA 960
Query 961 GACCAACGTCTTGGAGCTAACGTGGGGTCTGCTCAAGGACCTACAGGTTTAGGTAAATAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GACCAACGTCTTGGAGCTAACGTGGGGTCTGCTCAAGGACCTACAGGTTTAGGTAAATAC 1020
Query 1021 TTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGAGGAGAAACAATGCGCTTTTGGGAT 1080
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 TTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGAGGAGAAACAATGCGTTTTTGGGAT 1080
Query 1081 CTGCGTGCTCCCTGGTTAGAACCTTTAAGGGGTCCTAACGGTTTGGACTTGAGTAGGTTG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGCGTGCTCCCTGGTTAGAACCTTTAAGGGGTCCTAACGGTTTGGACTTGAGTAGGTTG 1140
Query 1141 AAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACTCATGCTCCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACTCATGCTCCT 1200
Query 1201 TTAGGTTCCTTAAATTCTGTAGGGGGCGTAGCTACTGAGATCAATGCAGTCAATTATGTC 1260
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTAGGTTCGTTAAATTCTGTAGGGGGCGTAGCTACTGAGATCAATGCAGTCAATTATGTC 1260
Query 1261 TCCCCGAGAAGTTGGTTATCTACCTCTCATTTTGTTCTAGGATTTTTCCTATTCGTGGGT 1320
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCTCCGAGAAGTTGGTTATCTACCTCTCATTTTGTTCTAGGATTTTTCCTATTCGTGGGT 1320
Query 1321 CATTTATGGCACGCGGGAAGGGCTCGGGCAGCGGCAGCGGGATTTGAAAAAGGAATTGAT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CATTTATGGCACGCGGGAAGGGCTCGGGCAGCGGCAGCGGGATTTGAAAAAGGAATTGAT 1380
Query 1381 CGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACT 1420
||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACT 1420
> ATCG00270.1 | Symbols: PSBD | photosystem II reaction center
protein D | chrC:32711-33772 FORWARD LENGTH=1062
Length=1062
Score = 99.0 bits (53), Expect = 1e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69979559730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5