BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475660
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35207.1 | Symbols: | transposable element gene | chr5:1347... 1127 0.0
AT1G42690.1 | Symbols: | transposable element gene | chr1:1604... 1114 0.0
AT5G34838.1 | Symbols: | transposable element gene | chr5:1300... 939 0.0
AT5G28700.1 | Symbols: | transposable element gene | chr5:1075... 937 0.0
AT5G28076.1 | Symbols: | transposable element gene | chr5:1008... 588 3e-167
AT3G15310.1 | Symbols: | transposable element gene | chr3:5152... 496 2e-139
AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 488 3e-137
AT5G32621.1 | Symbols: | transposable element gene | chr5:1227... 470 1e-131
AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 455 3e-127
AT2G14730.1 | Symbols: | transposable element gene | chr2:6305... 154 1e-36
> AT5G35207.1 | Symbols: | transposable element gene | chr5:13471730-13472482
REVERSE LENGTH=753
Length=753
Score = 1127 bits (610), Expect = 0.0
Identities = 678/710 (95%), Gaps = 8/710 (1%)
Strand=Plus/Plus
Query 1 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCGTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 43 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGTCGTTGC 102
Query 61 TTCCCAAGATCTCTGGATATGGCACGCATTTTTTGGACCTCCAGGTACCTTAAACGATAT 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 103 TTCCCAAGATCTCTGGATATGGCACGCGTTTTTTGGACCTCCAGGTACCTTAAACTATAT 162
Query 121 CAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAAGT 222
Query 181 GAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACCTCACAGATGGAATTTA 240
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAATACGTAGTCAACGAGAA-GACTATAATTTGGCTTACTACCTCACAGATGGAATTTA 281
Query 241 TCCTAAATGGGCTACATTTATCCAATCAATTTCAATTCCACAAGGTGATAAAGCTTCTTT 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCCTAAATGGTTTACATTTATCCAATCAATTTCAATTCCACAAGGTGATAAAGCTTCTTT 341
Query 301 ATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTGCTTTCGGAGTTTTGCA 360
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 342 ATTTGCTATAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTGCTTTTGGAGTTTTGCA 401
Query 361 AGCTCGGTTTGCCATTGTCAAACATCCAGCTCTTTTTCATGATAAGGTGAAAATT-GAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 402 AGCTCGGTTTGCCATTGTCAAACATCCAGCTCTTTTTCATGATAAGGTGAAAATTAGAAA 461
Query 420 ATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGGACGAACGAGATGGGT 479
|||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 462 -TATTATGCGAGCATATATAATACTTCACAATATGATAGTAGAAGACGAACGAGATGGGT 520
Query 480 ATACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAACCAGCTCTTCACAAGTGG 539
| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 521 ACACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAGCCATCTCTTCACAAGTAG 580
Query 540 ATTTCACTTATGCTAGAGATATATATGCCTTCAAATCTCGGTAATATGATGGCCACTAGA 599
||||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||
Sbjct 581 ATTTCACCTATGCTATAGATAT----GCCTCCAAATCTCGGTAATATGATGGCCATTAGA 636
Query 600 GCCCGAGTTCGTGATCGGATTAAACATGAAGAATTGAAAGCTGATTTAGTTGAACATGTA 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 637 GCCCGAGTTCGTGATCGGATTAAACATGAAGAATTGAAAGCTGATTT-GTTGAACATGTA 695
Query 660 TGGCAACATTATTACCAGAATCAATCTTAAAATGTAATCGTTAttttttt 709
|| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 696 TGAAAACATTATTATCATAATCAATCTTAAAATGTAATCGTTATTTTTTT 745
> AT1G42690.1 | Symbols: | transposable element gene | chr1:16043755-16045041
FORWARD LENGTH=1287
Length=1287
Score = 1114 bits (603), Expect = 0.0
Identities = 661/689 (96%), Gaps = 4/689 (1%)
Strand=Plus/Plus
Query 1 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCGTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCGTTGC 662
Query 61 TTCCCAAGATCTCTGGATATGGCACGCATTTTTTGGACCTCCAGGTACCTTAAACGATAT 120
||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 663 TTCACAAGATCTCTGAATATGGCACGCGTTTTTTGGACCTCCATGTACCTTAAACGATAT 722
Query 121 CAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAAGT 180
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 723 CAATGTTCTTGACCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCAAAAGT 782
Query 181 GAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACCTCACAGATGGAATTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACCTCACAGATGGAATTTA 842
Query 241 TCCTAAATGGGCTACATTTATCCAATCAATTTCAATTCCACAAGGTGATAAAGCTTCTTT 300
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 843 TCCTAAATAGGCTACATTTATCCAATCAATTTCAATTCTACAAGGTAATAAAGCTTCTTT 902
Query 301 ATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTGCTTTCGGAGTTTTGCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTGCTTTCGGAGTTTTGCA 962
Query 361 AGCTCGGTTTGCCATTGTCAAACATCCAGCTCTTTTTCATGATAAGGTGAAAATTGAAAA 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 AGCTCGGTTTGCCATTATCAAACATCCAGCTCTTTTTCATGATAAGGTGAAAATTGGCAA 1022
Query 421 TATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGGACGAACGAGATGGGTA 480
|||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 1023 TATTATGCGAGCATGTATAATACTTCACAATATGATAGTAGAGGACAAACGAGATGGTTA 1082
Query 481 TACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAACCAGCTCTTCACAAGTGGA 540
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1083 CACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAGCTAGCTCTTCACAAGTGGA 1142
Query 541 TTTCACTTATGCTAGAGATATATATGCCTTCAAATCTCGGTAATATGATGGCCACTAGAG 600
|||||||||||||| || | ||| ||||||||||||||||||||||||||||||| |||
Sbjct 1143 TTTCACTTATGCTACAG-T-TAT--GCCTTCAAATCTCGGTAATATGATGGCCACTGGAG 1198
Query 601 CCCGAGTTCGTGATCGGATTAAACATGAAGAATTGAAAGCTGATTTAGTTGAACATGTAT 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTCGAGTTCGTGATCGGATTAAACATGAAGAATTGAAAGCTGATTTAGTTGAACATGTAT 1258
Query 661 GGCAACATTATTACCAGAATCAATCTTAA 689
||||||||||| |||||||||||||||||
Sbjct 1259 GGCAACATTATAACCAGAATCAATCTTAA 1287
> AT5G34838.1 | Symbols: | transposable element gene | chr5:13008218-13009492
FORWARD LENGTH=936
Length=936
Score = 939 bits (508), Expect = 0.0
Identities = 548/567 (97%), Gaps = 4/567 (1%)
Strand=Plus/Plus
Query 105 GTACCTTAAACGATATCAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAG 164
|||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 368 GTACCTTAAACGATATCAATGTTTTTGACCGCTCACCAGTTTTTGATGATATATTACAAG 427
Query 165 GTCGAGCTCCGAAAGTGAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GTCGAGCTCCGAAAGTGAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACC 487
Query 225 TCACAGATGGAATTTATCCTAAATGGGCTACATTTATCCAATCAATTTCAATTCCACAAG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCACAGATGGAATTTATCCTAAATGGGCTACATTTATCCAATCAATTTCAATTCCACAAG 547
Query 285 GTGATAAAGCTTCTTTATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTG 344
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GTAATAAAGCTTCTTTATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTG 607
Query 345 CTTTCGGAGTTTTGCAAGCTCGGTTTGCCATTGTCAAACATCCAGCTCTTTTTCATGATA 404
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 608 CTTTCGGAGTTTTGCAAGCTCGGTTTGCCATTATCAAACATCCAGCTCTTTTTCATGATA 667
Query 405 AGGTGAAAATTGAAAATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGG 464
|||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 668 AGGTGAAAATTGGCAATATTATGCGAGCATGTATAATACTTCACAATATGATAGTAGAGG 727
Query 465 ACGAACGAGATGGGTATACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAACCA 524
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 728 ACGAACGAGATGGTTACACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAGCTA 787
Query 525 GCTCTTCACAAGTGGATTTCACTTATGCTAGAGATATATATGCCTTCAAATCTCGGTAAT 584
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 788 GCTCTTCACAAGTGGATTTCACTTATGCTACAGATAT----GCCTTCAAATCTCGGTAAT 843
Query 585 ATGATGGCCACTAGAGCCCGAGTTCGTGATCGGATTAAACATGAAGAATTGAAAGCTGAT 644
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 ATGATGGCCACTAGAGCTCGAGTTCGTGATCGGATTAAACATGAAGAATTGAAAGCTGAT 903
Query 645 TTAGTTGAACATGTATGGCAACATTAT 671
|||||||||||||||||||||||||||
Sbjct 904 TTAGTTGAACATGTATGGCAACATTAT 930
> AT5G28700.1 | Symbols: | transposable element gene | chr5:10755920-10757122
REVERSE LENGTH=1203
Length=1203
Score = 937 bits (507), Expect = 0.0
Identities = 572/603 (95%), Gaps = 6/603 (1%)
Strand=Plus/Plus
Query 1 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCGTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 603 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTATAGGTTGTTGC 662
Query 61 TTCCCAAGATCTCTGGATATGGCACGC-ATTTTTTGGACCTCCAGGTACCTTAAACGATA 119
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 663 TTCCCAAGATCTCTGGATATGGCACGCGA-TTTTTGGACCTCCAGGTACCTTAAATGATA 721
Query 120 TCAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAAG 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 TCAATGTTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTTCGAAAG 781
Query 180 TGAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACCTCACAGATGGAATTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACCTCACAGATGGAATTT 841
Query 240 ATCCTAAATGGGCTACATTTATCCAATCAATTTCAATTCCACAAGGTGATAAAGCTTCTT 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 842 ATCCTAAATGGGCTACATTTATCCAATCAATTTCAAATCCACAAGGTGATAAAGCTTCTT 901
Query 300 TATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTGCTTTCGGAGTTTTGC 359
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 TATTTGTTACAACTCAAAAAGCTTGTCGTAAAGATGTTGAGCGTGCTTTCGGAGTTTTTC 961
Query 360 AAGCTCGGTTTGCCATTGTCAAACATCCAGCTCTTTTTCATGATAAGGTGAAAATTGAAA 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 962 AAGCTCGGTTTTCCATTGTCAAACATCCAGCTCTTTTTCATGATAAGGTGAAAATTGGAA 1021
Query 420 ATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGGACGAACGAGATGGGT 479
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1022 ATATTATGCGAGCATGTATAATACTTCACAATATGATAGTAGAGGATGAACGAGATGGGT 1081
Query 480 ATACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAACCAGCTCTTCACAAGTGG 539
| ||||||| ||||||||||||||| |||||||| |||| | ||||||||||||||||
Sbjct 1082 ACACTCAGTGTGATGTATCTGAATTTGTACATCCTGAATTTGCTAGCTCTTCACAAGTGG 1141
Query 540 ATTTCACTTATGCTAGAGATATATATGCCTTCAAATCTCGGTAATATGATGGCCACTAGA 599
||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1142 ATTTCACGTATGCTACA--TATAT--GCCTTCAAATCTCGGTAATATGATGGCCACTAGA 1197
Query 600 GCC 602
|||
Sbjct 1198 GCC 1200
> AT5G28076.1 | Symbols: | transposable element gene | chr5:10086843-10089344
FORWARD LENGTH=2502
Length=2502
Score = 588 bits (318), Expect = 3e-167
Identities = 509/600 (85%), Gaps = 17/600 (3%)
Strand=Plus/Plus
Query 111 TAAACGATATCAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAG 170
||||| || ||||||||| |||||| ||||| |||||||||||||||||||||| |||||
Sbjct 1913 TAAACAATGTCAATATTCATGATCGTTCACCTGTTTTTGATGATATATTACAAGTTCGAG 1972
Query 171 CTCCGAAAGTGAAATACGTAGTCAACGGGAAAGACTATAATTTGGCTTACTACCTCACAG 230
||| |||||||| ||| |||| ||||| ||| || ||||||||||||||||| |||||||
Sbjct 1973 CTCTGAAAGTGAGATAAGTAGACAACGAGAATGATTATAATTTGGCTTACTATCTCACAG 2032
Query 231 ATGGAATTTATCCTAAATGGGCTACATTTATCCAATCAATTTCAATTCCACAAGGTGATA 290
||| ||||||||||||||||||||||||||||||||| |||||| | ||||||| ||| |
Sbjct 2033 ATGAAATTTATCCTAAATGGGCTACATTTATCCAATCTATTTCACTACCACAAGATGAAA 2092
Query 291 AAGCTTCTTTATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTGC-TTTC 349
|| || ||||||||||||||| ||||||||||||||||||||||||| ||||| | |||
Sbjct 2093 AAACTACTTTATTTGCTACAAATCAAGAAGCTTGTCGTAAAGATGTTAAGCGTTCCTTT- 2151
Query 350 GGAGTTTTGCAAGCTCGGTTTGCCATTGTCAAACATCCAGCTCTT-TTTCATGATAAGGT 408
|||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||| |
Sbjct 2152 GGAGATTTGCAAGCTCGATTTGCTATTGTCAAACATCCAGCTCTTATTTGG-GATAATAT 2210
Query 409 GAAAATT-GAAAATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGGACG 467
|||||| |||| ||||||| |||||| ||| ||| | |||||||||||| |||| ||||
Sbjct 2211 GAAAATCAGAAA-TATTATGGGAGCATATATAATATTTCACAATATGATAATAGATGACG 2269
Query 468 AACGAGATGGGTATACTCAGTTTGATGTATCTGAATTCGTACATCCAGAATCAACCAGCT 527
|||||||||| || ||||| | ||||||||| || || | |||||||||||||||||| |
Sbjct 2270 AACGAGATGGATACACTCAATATGATGTATCCGATTTTGCACATCCAGAATCAACCAGTT 2329
Query 528 CTTCACAAGTGGATTTCACTTATGCTAGAGATATATATGCCTTCAAATCTCGGTAATATG 587
|||||||||||||||||| ||| ||| |||||| |||||||||||| ||||||| |
Sbjct 2330 TTTCACAAGTGGATTTCACATATTCTACAGATAT----GCCTTCAAATCTTGGTAATACG 2385
Query 588 ATGGCCACTAGAGCCCGAGTTCGTGATCGGATTAA-ACATGAAGAATTGAAAGCTGATTT 646
||||||||| || ||| | ||||||||| || ||| | ||||| |||||||| ||||||
Sbjct 2386 ATGGCCACTCGAACCCAACTTCGTGATCAGACTAAGA-ATGAACAATTGAAAATTGATTT 2444
Query 647 AGTTGAACATGTATGGCAACATTAT--TACCAGAATCAATCTTAAAATGTAATCGTTAtt 704
||| ||||| || ||||| ||| | | || ||||||| |||||| | || | ||||||
Sbjct 2445 AGTCGAACACATAAGGCAAAATTTTGGT-CC-GAATCAAGCTTAAATTTTATT-GTTATT 2501
> AT3G15310.1 | Symbols: | transposable element gene | chr3:5152099-5153642
REVERSE LENGTH=1544
Length=1544
Score = 496 bits (268), Expect = 2e-139
Identities = 442/523 (85%), Gaps = 23/523 (4%)
Strand=Plus/Plus
Query 1 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCG-TTG 59
||||||||| || ||||||||||| || ||||||||||| ||||||||||||| || | |
Sbjct 728 TTGGAAAGGCCAGTATACACGTGGCTCTGGAAAACCAACCATCGTTTTAGAGG-CGATCG 786
Query 60 CTTCCCAAGATCTCTGGATATGGCACGCATTTTTTGGACCTCCAGGTACCTTAAACGATA 119
| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 787 CATCACAAGATCTCTGGATTTGGCACGTATTTTTTGGACCTCCAGGTACCTTAAACGATA 846
Query 120 TCAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAA- 178
| |||||||||||||| |||||| |||||||||||||||||||||||||||| || |||
Sbjct 847 TAAATATTCTTGATCGATCACCAATTTTTGATGATATATTACAAGGTCGAGCCCC-AAAT 905
Query 179 GTGAAATACGTAGTCAACGGGAA-AGACTATAATTTGGCTTACTACCTCACAGATGGAAT 237
||||| ||| |||||| || | ||| ||| |||| |||||||| ||||||||||| ||
Sbjct 906 GTGAAGTACAAAGTCAATGG-ACGAGAGTATCATTTAGCTTACTATCTCACAGATGGTAT 964
Query 238 TTATCCTAAATGGGCTACATTTATCCAATCAATTTCAATT-CCACAAGGT-GATAAAGCT 295
|||||| |||||||| || ||||||||||| ||| | | | |||||| | | |||||
Sbjct 965 TTATCCAAAATGGGCGACTTTTATCCAATCTATT-CGACTACCACAAAATCGG-AAAGCC 1022
Query 296 TCTTTATTTGCTACA-ACTCAAGAAGCTTGTC-GTAAAGATGTTGAGCGTGC-TTTCGGA 352
|||||||||| ||| | ||||||||| | | |||||||||| || ||||| ||| |||
Sbjct 1023 ACTTTATTTGCAACACA-TCAAGAAGCG-GACCGTAAAGATGTCGAACGTGCATTT-GGA 1079
Query 353 GTTTTGCAAGCTCGGTTTGC-CATTGTCAAACATCCAGCTCTT-TTTCATGATAAGGTGA 410
|| ||||||||||| ||| | |||| | ||| ||||||||||| ||| ||||||| |
Sbjct 1080 GTATTGCAAGCTCGCTTT-CACATTATTAAAAATCCAGCTCTTGTTTGG-GATAAGGAAA 1137
Query 411 AAATTGAAAATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGGACGAAC 470
|||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1138 AAATTGGAAATATTATGAAAGCATGTATCATACTGCACAATATGATAGTCGAAGACGAAC 1197
Query 471 GAGATGGGTATA-C-T-CAGTTTGATGTATCTGAATTCGTACA 510
|||||||||| | | | ||||||||||| || |||||| ||||
Sbjct 1198 GAGATGGGTACAACATTCAGTTTGATGTTTCAGAATTCCTACA 1240
> AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475
REVERSE LENGTH=3840
Length=3840
Score = 488 bits (264), Expect = 3e-137
Identities = 464/557 (83%), Gaps = 28/557 (5%)
Strand=Plus/Plus
Query 1 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCGTTGC 60
||||||||| || ||||| || || || ||||||||||| || ||||||||||| || ||
Sbjct 614 TTGGAAAGGCCAGTATACGCGAGGCTCTGGAAAACCAACTATTGTTTTAGAGGCAGTCGC 673
Query 61 TTCCCAAGATCTCTGGATATGGCACGCATTTTTTGGACCTCCAGGTACCTTAAACGATAT 120
|| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct 674 ATCACAAGATCTCTGGATATGACACGCGTTTTTTGGACCTCTAGGTACCTTAAACGATAT 733
Query 121 CAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAA-G 179
||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||| |
Sbjct 734 CAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCC-AAATG 792
Query 180 TGAAATACGTAG-TCAACGGGAA-AGACTATAATTTGGCTTACTACCTCACAGATGGAAT 237
|| || | || ||||||| | ||| ||||||||||||||||| ||||||||||| ||
Sbjct 793 TGCGTTATG-AGGTCAACGG-ACGAGAGTATAATTTGGCTTACTATCTCACAGATGGTAT 850
Query 238 TTATCCTAAATGGGCTACATTTATCCAATCAATTTCAA-TTCCACAAGGT-GATAAAGCT 295
|| || |||||||| || ||||| ||||| ||| | | ||||||||||| || ||| |
Sbjct 851 ATAACCGAAATGGGCGACTTTTATACAATCTATT-CGACTTCCACAAGGTCGA-AAATCA 908
Query 296 TCTTTATTTGC-TACA-ACTCAAGAAGCTTGT-CGTAAAGATGTTGAGCGTGC-TTTCGG 351
||||||||||| | || | ||||||||| || ||||||||||| |||||||| ||| ||
Sbjct 909 TCTTTATTTGCAT-CATA-TCAAGAAGCC-GTTCGTAAAGATGTCGAGCGTGCATTT-GG 964
Query 352 AGTTTTGCAAGCTCGGTTTGC-CATTGTCAAACATCCAGCTCTT-TTTCATGATAAGGTG 409
||| ||| ||||||||||| | |||| | ||| | ||||||||| ||| |||||||
Sbjct 965 AGTATTGTAAGCTCGGTTT-CACATTATTAAAAACCCAGCTCTTATTTGG-GATAAGGAA 1022
Query 410 AAAATTGAAAATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGGACGAA 469
||||| | |||||||||||| |||||||||||| ||||||||||||| || || ||||||
Sbjct 1023 AAAATAGGAAATATTATGCGGGCATGTATCATATTGCACAATATGATTGTTGAAGACGAA 1082
Query 470 CGAGATGGGTATACTCAGTTTGATGTATCTG-AATTCGTACATCCA-GAATCAA-CCAGC 526
||||||||||||||||| |||||||| | | ||||| |||| | ||| ||| || |
Sbjct 1083 CGAGATGGGTATACTCAATTTGATGT-TGAGGAATTCATACA-CGTTGAAGCAAACC-GA 1139
Query 527 TCTTCACAAGTGGATTT 543
|||||||||| |||||
Sbjct 1140 ACTTCACAAGTCGATTT 1156
> AT5G32621.1 | Symbols: | transposable element gene | chr5:12271360-12273728
FORWARD LENGTH=1878
Length=1878
Score = 470 bits (254), Expect = 1e-131
Identities = 437/522 (84%), Gaps = 25/522 (5%)
Strand=Plus/Plus
Query 3 GGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCG-TTGCT 61
||||||| || ||||||||||| || ||||||||||| ||||||||||||| || | |
Sbjct 617 GGAAAGGCCAGTATACACGTGGCTCTGGAAAACCAACCATCGTTTTAGAGG-CGATAGGA 675
Query 62 TCCCAAGATCTCTGGATATGGCACGCATTTTTTGGACCTCCAGGTACCTTAAACGATATC 121
|| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TCACAAGATTTCTGGATTTGGCACGCATTTTTTGGACCTCCAGGTACCTTAAACGATATA 735
Query 122 AATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAA-GT 180
|||||||||||||| |||||| |||||||||||||||||||||||||||| || ||| ||
Sbjct 736 AATATTCTTGATCGATCACCAATTTTTGATGATATATTACAAGGTCGAGCCCC-AAATGT 794
Query 181 GAAATACGTAGTCAACGGGAAAG-ACTATAATTTGGCTTACTACCTCACAGATGGAATTT 239
||| ||| |||||| || | | | ||| |||| |||||||| |||||||||| ||||
Sbjct 795 GAAGTACAAAGTCAATGG-ACGGGAGTATCATTTAGCTTACTATATCACAGATGGTATTT 853
Query 240 ATCCTAAATGGGCT-ACATTTATCCAATCAATTTCAATT-CCACAAGGT-GATAAAGCTT 296
|||| ||||||| | || ||||||||||| ||| | | | |||||| || | |||||
Sbjct 854 ATCCGAAATGGG-TGACTTTTATCCAATCTATT-CGACTACCACAAAGTCGG-AAAGCCA 910
Query 297 CTTTATTTGCTACA-ACTCAAGAAGCTTGTC-GTAAAGATGTTGAGCGTGC-TTTCGGAG 353
|||||||||| ||| | ||||||||| | | |||||||||| || ||||| ||| ||||
Sbjct 911 CTTTATTTGCAACACA-TCAAGAAGCG-GCCCGTAAAGATGTCGAACGTGCATTT-GGAG 967
Query 354 TTTTGCAAGCTCGGTTTGC-CATTGTCAAACATCCAGCTCTT-TTTCATGATAAGGTGAA 411
| ||||||||||| ||| | |||| | ||| ||||||||||| ||| ||||| | ||
Sbjct 968 TATTGCAAGCTCGCTTT-CACATTATTAAAAATCCAGCTCTTGTTTGG-GATAAAGAAAA 1025
Query 412 AATTGAAAATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGAGGACGAACG 471
||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct 1026 AATTGGAAATATTATGAAAGCATGTATCATACTGCACAATATGATAGTCGAAGACGAACG 1085
Query 472 AGATGGGTATA-C--TCAGTTTGATGTATCTGAATTCGTACA 510
||||||||| | | |||||||||||| || |||||| ||||
Sbjct 1086 AGATGGGTACAACACTCAGTTTGATGTTTCAGAATTCCTACA 1127
> AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015
REVERSE LENGTH=911
Length=911
Score = 455 bits (246), Expect = 3e-127
Identities = 429/513 (84%), Gaps = 29/513 (6%)
Strand=Plus/Plus
Query 1 TTGGAAAGGACAATATACACGTGGATCAGGAAAACCAACAATCGTTTTAGAGGCCGTTGC 60
||||||||| || ||||| || || || ||||||||||| || ||||||||||| || ||
Sbjct 228 TTGGAAAGGCCAGTATACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGTCGC 287
Query 61 TTCCCAAGATCTCTGGATATGGCACGCA-TTTTTTGGACCTCCAGGTACCTTAAACGATA 119
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 288 ATCACAAGATCTCTGGATATGGCACGCATTTTTTTGGACCTCCAGGTACCTTAAACGATA 347
Query 120 TCAATATTCTTGATCGCTCACCAGTTTTTGATGATATATTACAAGGTCGAGCTCCGAAAG 179
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 348 TCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCC-AAAT 406
Query 180 T-GAAATACGTAG-TCAACGGGAA-AGAC-----TATAATTTGGCTTACTACCTCACAGA 231
| | ||| || |||||| || |||| ||||||||||||||||| ||||||||
Sbjct 407 TTGCGTTACA-AGGTCAACGTCAACAGACGAGAGTATAATTTGGCTTACTATCTCACAGA 465
Query 232 TGGAATTTATCCTAAATGGGCTACATTTATCCAATCAATTTCAA-TTCCACAAGGT-GAT 289
||| || ||||| |||||| || ||||||||||| ||| | | ||||||||||| ||
Sbjct 466 TGGTATATATCCGAAATGGAAGACTTTTATCCAATCTATT-CGACTTCCACAAGGTCGA- 523
Query 290 AAAGCTTCTTTATTTGC-TACA-ACTCAAGAAGCTTGTC-GTAAAGATGTTGAGCGTGC- 345
||| | ||||||||||| | || | ||||||| | ||| |||||||||| ||||||||
Sbjct 524 AAATCATCTTTATTTGCAT-CATA-TCAAGAAACC-GTCCGTAAAGATGTCGAGCGTGCA 580
Query 346 TTTCGGAGTTTTGCAAGCTCGGTTTGC-CATTGTCAAACATCCAGCTCTT-TTTCATGAT 403
||| ||||| ||||||||||||||| | |||| | ||| | ||| ||||| ||| |||
Sbjct 581 TTT-GGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCTTATTTGG-GAT 637
Query 404 AAGGTGAAAAT-TGAAAATATTATGCGAGCATGTATCATACTGCACAATATGATAGTAGA 462
|||| ||||| || || |||||||||| ||||||||||| ||||||||||||| || ||
Sbjct 638 AAGGAAAAAATATGGAA-TATTATGCGAACATGTATCATATTGCACAATATGATTGTTGA 696
Query 463 GGACGAACGAGATGGGTATACTCAGTTTGATGT 495
|||||||||||| |||||||||| ||||||||
Sbjct 697 AGACGAACGAGATTGGTATACTCAATTTGATGT 729
> AT2G14730.1 | Symbols: | transposable element gene | chr2:6305549-6307309
FORWARD LENGTH=354
Length=354
Score = 154 bits (83), Expect = 1e-36
Identities = 105/115 (91%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 285 GTGATAAAGCTTCTTTATTTGCTACAACTCAAGAAGCTTGTCGTAAAGATGTTGAGCGTG 344
|||| |||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 239 GTGACAAAGATTCTTTATTTGCTACAAATCAAGAAGTTTGTCGTAAAGATGTAGAGCGTG 298
Query 345 CTTTCGGAGTTTTGCAAGCTCGGTTTGCCATTGTCA-AACATCCAGCTCTT-TTT 397
|||| ||||||||||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 299 CTTTTGGAGTTTTGCAAGCTCGGTTTGCCATTGTCACAA-ATCCAACTCTTATTT 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5