BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475696
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocit... 2285 0.0
AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:2... 558 5e-158
> AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitrate
dehydrogenase | chr1:24538886-24542129 FORWARD LENGTH=1703
Length=1703
Score = 2285 bits (1237), Expect = 0.0
Identities = 1475/1585 (93%), Gaps = 36/1585 (2%)
Strand=Plus/Plus
Query 23 ACAAGTTTTTTCACCTACTTCA-CA-TCACCTCCTCCTTCGACGATCTTCTTCTCCGGCT 80
||||| | |||||||||||||| || ||| | || ||||| | ||||||||||||||||
Sbjct 48 ACAAGCTATTTCACCTACTTCATCACTCATCACCAGCTTCG-C-ATCTTCTTCTCCGGCT 105
Query 81 TGATCTTCTCTCGTTTTC-AGATCTCCGACGATCGGAATATCCAATCCGATCGATTAATT 139
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 106 TGATCTTCTCTCG-TTTCTAGATCTCCGACGATCGGAATATCAAATCCGATCGATTAATT 164
Query 140 CCGTCAATCTTACAAAAACCG-AAAGC--AAAAACACCATGGCGTTTGAGAAGATCAAGG 196
| ||||||| |||||||||| ||| | ||||| |||||||||||||||||||||||||
Sbjct 165 CTGTCAATCACACAAAAACCGAAAACCAAAAAAAAACCATGGCGTTTGAGAAGATCAAGG 224
Query 197 TGGCAAATCCCATCGTCGAGATGGATGGTGATGAAATGACTAGGGTTATCTGGAAGTCTA 256
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 225 TGGCAAATCCCATCGTCGAGATGGATGGTGATGAAATGACCAGGGTTATTTGGAAGTCTA 284
Query 257 TCAAGGATAAGCTTATTACGCCTTTTGTGGAGTTGGATATCAAGTACTTTGATCTTGGTC 316
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 285 TCAAGGATAAGCTTATTACTCCTTTTGTGGAGTTGGATATCAAGTACTTCGACCTTGGTC 344
Query 317 TTCCTCACCGCGATGCTACGGATGACAAAGTTACTGTTGAAAGTGCTGAAGCCACTAAGA 376
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 345 TTCCTCACCGTGATGCTACGGATGACAAAGTTACTATTGAAAGTGCTGAAGCTACTAAGA 404
Query 377 AGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGATGAAGGCCGCGTCACGGAAT 436
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 405 AGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGATGAAGGCCGTGTCACGGAAT 464
Query 437 TTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCATCAGGAATATCCTGAATGGAA 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCATCAGGAATATCCTGAATGGAA 524
Query 497 CTGTGTTTAGAGAACCAATTATCTGCAAAAATGTTCCTAAGCTTGTCCCAGGCTGGACAA 556
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 525 CTGTATTTAGAGAGCCAATTATCTGCAAAAATGTTCCCAAGCTTGTCCCAGGCTGGACAA 584
Query 557 AGCCGATTTGCATTGGAAGGCATGCTTTTGGTGATCAGTATCGTGCTACTGATGCTGTAA 616
|||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 585 AGCCCATCTGCATTGGAAGGCATGCTTTTGGTGATCAGTACCGTGCCACTGATGCTGTAA 644
Query 617 TTAAGGGACCAGGAAAACTGACCATGACCTTTGAGGGAAAGGATGGGAAAACTGAAACCG 676
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 645 TCAAGGGACCAGGAAAACTGACTATGACCTTTGAGGGAAAAGATGGGAAAACTGAAACCG 704
Query 677 AAGTCTTTACATTTACTGGTGAAGGTGGTGTTTCTATGGCAATGTACAACACTGATGAGA 736
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 705 AAGTCTTTACATTTACTGGTGAAGGTGGTGTTGCTATGGCAATGTACAACACTGAT--GA 762
Query 737 TTGTCC-TCCAAG-ATGAGCT-AT--ATC--TTTA-TCTTATCATACAGTCCATCCTGG- 787
|||| ||| | | ||| || ||| | | || | || || | |||
Sbjct 763 --GTCCATCCGTGCTTTTGCTGATGCATCGATGAACACTGCTTAT-GAG-AAAAAGTGGC 818
Query 788 CACTTTATCTTAGCACAAAGAATACCATTCTTAAGAAATACGATGGCAGATTCAAAGACA 847
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CACTTTACCTTAGCACAAAGAATACCATTCTTAAGAAATACGATGGCAGATTCAAAGACA 878
Query 848 TCTTCCAAGAAGTCTATGAAGCCAGCTGGAAGTCAAAGTATGAGGCTGCTGGAATCTGGT 907
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 879 TCTTCCAAGAAGTCTATGAAGCCAGCTGGAAGTCGAAGTATGATGCTGCTGGAATCTGGT 938
Query 908 ATGAACACCGTCTCATTGATGATATGGTGGCCTACGCTCTTAAGAGCGAGGGGGGCTATG 967
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 939 ATGAACACCGTCTCATTGATGATATGGTGGCCTACGCTCTTAAGAGTGAGGGAGGCTATG 998
Query 968 TGTGGGCTTGCAAAAACTATGATGGTGATGTCCAAAGTGATTTCTTGGCACAAGGATTCG 1027
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TTTGGGCATGCAAAAACTATGATGGTGATGTCCAAAGTGATTTCTTGGCACAAGGATTCG 1058
Query 1028 GGTCACTTGGATTGATGACATCTGTTCTGGTCTGCCCGGATGGAAAGACGATTGAAGCTG 1087
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1059 GGTCACTTGGATTGATGACATCTGTTCTGGTCTGCCCAGATGGAAAGACGATTGAAGCTG 1118
Query 1088 AAGCGGCCCATGGAACTGTCACCCGTCACTTCAGGGTTCATCAGAAAGGTGGTGAGACCA 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 AAGCGGCCCATGGAACTGTCACCCGTCACTTCAGGGTTCATCAGAAAGGTGGTGAGACCA 1178
Query 1148 GCACAAACAGCATAGCCTCCATCTTTGCTTGGACTCGTGGACTTGCACACAGGGCTAAGT 1207
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1179 GCACAAACAGCATAGCCTCTATTTTTGCTTGGACTCGTGGACTTGCACACAGGGCTAAGT 1238
Query 1208 TAGATGACAACGCAAAACTCTTGGATTTCACTGAGAAGCTCGAAGCCGCTTGTGTTGGGA 1267
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1239 TAGATGACAACGCAAAACTCTTGGATTTCACTGAGAAGCTGGAAGCCGCTTGTGTTGGGA 1298
Query 1268 CAGTGGAGTCAGGGAAAATGACCAAAGATCTTGCACTCATCATTCACGGCTCAAAGCTTT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 CAGTGGAGTCAGGGAAAATGACCAAAGATCTTGCACTCATCATTCACGGCTCAAAGCTTT 1358
Query 1328 CGAGGGACACTTACCTGAACACAGAAGAGTTCATCGATGCTGTCGCTGCTGAGCTCAAAG 1387
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1359 CGAGGGACACGTACCTGAACACAGAGGAGTTCATCGATGCAGTCGCTGCTGAGCTCAAAG 1418
Query 1388 CAAGACTCCAA-GCATAAGAAACTGAAGAAATTTGGTAAAATTCGAACGTCTCAGT-C-T 1444
||||||| || || |||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 1419 AAAGACTC-AATGCTTAAGAAACTGAAGAAATTGGGTAAAATTCGAACGTCTCAGTTCCT 1477
Query 1445 ------CTTATCtggttggtggggttggttgggtt-ggttgggATTAAACTTTGGTGGAG 1497
||||||||||||||||||||||||||| | || || || ||||||| ||||||
Sbjct 1478 AAGTGTCTTATCTGGTTGGTGGGGTTGGTTGGGATCGGGAGGAAT-AAACTTTTGTGGAG 1536
Query 1498 AGGAGTGTTGAGAACGATTTGTTTCCTCCCTTAAAATATTTACAAAATATTGCGACATTT 1557
|||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 1537 AGGAGTGTTGAGAACGATTTGTTTCCTCTCTTATAATATTTCCAAAATATTGCGACATTT 1596
Query 1558 TTCCATTTTTATTCAGATCTCGAAT 1582
|||||||||||||||||||||||||
Sbjct 1597 TTCCATTTTTATTCAGATCTCGAAT 1621
> AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:20283480-20286786
FORWARD LENGTH=1571
Length=1571
Score = 558 bits (302), Expect = 5e-158
Identities = 927/1222 (76%), Gaps = 70/1222 (6%)
Strand=Plus/Plus
Query 184 GAGAAGATCAAGGTG-GCAAATCCCATCGTCGAGATGGATGGTGATGAAATGACTAGGGT 242
||||||||||||||| | |||||| | || || |||||||| || ||||||||| | ||
Sbjct 50 GAGAAGATCAAGGTGATC-AATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGT 108
Query 243 TATCTGG-AAGTCTATCAAGGATAAGCTTA-TTACGCCTTTTGTGGAGTTGGATATCAAG 300
||||||| || || ||||| || ||||||| || | ||||| ||||| ||||||||||
Sbjct 109 TATCTGGAAATTC-ATCAAAGACAAGCTTATTTTC-CCTTTCCTGGAGCTGGATATCAAA 166
Query 301 TACTTTGATCTTGGTCTTCCTCACCGCGA-TGCTACGGATGACAAAGTTACTGTTGAAAG 359
|||||||||||||| || ||| ||||||| | | || ||||| || |||||| | || |
Sbjct 167 TACTTTGATCTTGGACTGCCTAACCGCGATTTC-ACTGATGATAAGGTTACTATAGAGAC 225
Query 360 TGCTGAAGCCAC-TAAGAAGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGATG 418
||||||||| || | | ||||| |||||||| || |||||||| || || ||||| ||||
Sbjct 226 TGCTGAAGCTACTTTA-AAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATG 284
Query 419 AAGGC-CGCGTCACGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCATC 477
|| || || || | ||| || ||||| ||| | |||||||| ||||| ||||| || ||
Sbjct 285 AA-GCTCGTGTTAGGGAGTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAATGGAACTATA 343
Query 478 AGGAATATCCTGAATGGAACTGTGTTT-AGAGAACCAATTATCTGCAAAAATGTTCCTAA 536
||||| || | || || || || ||| || ||||| || || |||| ||| | |||
Sbjct 344 AGGAACATTTTAAACGGCACAGT-TTTCAGGGAACCTATCATTTGCAGAAACATCCCT-C 401
Query 537 G-CTTGTCCCAGGCTGGACAAAGCCGATTTGCATTGGAAGGCATGCTTTTGGTGATCAGT 595
| ||||| ||||| ||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 402 GTCTTGTTCCAGGATGGACGAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGT 461
Query 596 ATCGTGCTACTGATGCTGTAAT-T-AAGGGACCAGGAAAACTGAC-CATGACCTTT-GAG 651
|| | || |||||| || | | | || | |||||||||||||| | | | ||| |||
Sbjct 462 ATAGAGCCACTGAT-CTC-ATTGTCAATGAACCAGGAAAACTGAAAC-T-AGTTTTTGAG 517
Query 652 GGAAA-GGATGG-----GAAAACTGAAACCGAAGTCTTTACATTT-ACTGGTGAAGGTGG 704
|| |||| |||||| ||| ||||||||| | |||| || |||| |||||
Sbjct 518 CCAAGTGGATCTTCTCAGAAAACAGAATTCGAAGTCTTCA-ATTTCACCGGTGGAGGTGT 576
Query 705 TGTTTCTATGGCAATGTACAACACTGATGAGAT-TGTCC-TCCAA--GATGAG-C-TATA 758
|| || || | || |||| |||||||||||| | | | | | || | |||| | | |
Sbjct 577 TGCTT-TA-GCCA-TGTATAACACTGATGAG-TCTATTCGTGCATTTGCTGAGTCCTCGA 632
Query 759 TCTTTATCTTATCATAC-AGTCCATCCTGGC-ACTTTATCT-TAGCACAAAGAATACCAT 815
| | | | | | ||| || | |||| |||||| || | |||||| || |||||
Sbjct 633 TGTACA-C--AGCTTACCAGAAAAAG-TGGCCACTTTACCTCTC-CACAAAAAACACCAT 687
Query 816 TCTTAAGAA-ATACGATGGCAGATTCAAAGACATCTTCCAAGAAGTCTATGAAGCCAGCT 874
|| || || ||| ||||| |||||||| || || ||||||||||| |||||||| | ||
Sbjct 688 CCTCAA-AATATATGATGGAAGATTCAAGGATATATTCCAAGAAGTTTATGAAGCTAACT 746
Query 875 GGA-AGTCAAAGTATGAGGCTGCTGGAATCTGGTATGAACACCGTCTCATTGATGATATG 933
||| | || |||||||| || || || || |||||||| || ||| | || |||||||||
Sbjct 747 GGAGA-TCCAAGTATGAAGCAGCAGGGATATGGTATGAGCATCGTTTGATAGATGATATG 805
Query 934 GTGGCCTACGCTCTT-AAGAGCGAGGGGGGCTATGTGTGGGCTTGCAAAAACTATGATGG 992
|| || || || | | || || || ||||| || || ||||| ||||| || || |||||
Sbjct 806 GTTGCATATGC-CATGAAAAGTGAAGGGGGTTACGTCTGGGCATGCAAGAATTACGATGG 864
Query 993 TGATGTCCAAAGTGATTTCTTGGCACAAGGAT-TCGGGTCACTTGGATTGATGACATCTG 1051
||||| || || |||||||| || ||||||| | || || || ||| ||||||| || |
Sbjct 865 AGATGTACAGAGCGATTTCTTAGCCCAAGGATAT-GGATCTCTGGGAATGATGACTTCGG 923
Query 1052 T-TCTGGTCTGCCCGGATGGAAAGACGATTGAAGCTGAAGCGGCCCATGGAACTGTCACC 1110
| | |||| || || ||||||||||| |||||||| ||||| || ||||| || || ||
Sbjct 924 TGT-TGGTTTGTCCAGATGGAAAGACCATTGAAGCAGAAGCAGCTCATGGCACAGTTACA 982
Query 1111 CGTCACTTCAGGGTTCATCAGAAAGGTGGTGAGACCAGCACAAACAGCATAGCCTCCATC 1170
|| |||| ||| ||||| |||||||||||||| || ||||| |||||||||||||| ||
Sbjct 983 CGCCACTACAGAGTTCACCAGAAAGGTGGTGAAACAAGCACCAACAGCATAGCCTCTATT 1042
Query 1171 TTTGCTTGGACTC-GTGGACTTGCACACAGGGCTAAGTTAGAT-GACAACGCAAAACTCT 1228
||||||||| | | | || ||||| |||||||| ||| | || | ||| || |||||
Sbjct 1043 TTTGCTTGGTC-CAGAGGCCTTGCCCACAGGGCAAAGCTGGACAG-CAATGCCGCACTCT 1100
Query 1229 TG-GATTTCACTGAGAAGCTCGAAGCCGCTTGTGTTGGGACAGTGGAGTCAGGGAAAATG 1287
|| | | | |||||||| || ||||| ||||| | ||||| |||||||| || ||||||
Sbjct 1101 TGAGCTAT-ACTGAGAAACTAGAAGCAGCTTGCATGGGGACGGTGGAGTCTGGCAAAATG 1159
Query 1288 ACCAAAGATCTTGCACT-CATCATTCACGGCTCAAAGCTTTCGAGGGA-CACTTACCTGA 1345
||||| ||||| || || | | || ||||| | ||| || |||||| || | | |||
Sbjct 1160 ACCAAGGATCTAGCTCTTC-TGATCCACGGAGCCAAGGTTAGGAGGGATCAGT-ATGTGA 1217
Query 1346 ACACAGAAGAGTTCATCGATGC 1367
| || ||||||||||| |||||
Sbjct 1218 ATACGGAAGAGTTCATTGATGC 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5