BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475701
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation fact... 1075 0.0
AT2G47170.1 | Symbols: ARF1A1C | Ras-related small GTP-binding ... 713 0.0
> AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation factor
A1E | chr3:23051650-23053757 FORWARD LENGTH=867
Length=867
Score = 1075 bits (582), Expect = 0.0
Identities = 629/651 (97%), Gaps = 6/651 (1%)
Strand=Plus/Plus
Query 1 CTCCTCTCACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCGACAGTGTTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCTCTCACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCGACAGTGTTAA 60
Query 61 GTCTAG-G---TCTTCTTCTTCGGCGTAGtttttttCCC-GCTTTGAAATATGGGGCTGT 115
|||||| | |||||||||||||||||||||||| ||| || |||||| ||||| || |
Sbjct 61 GTCTAGAGTCTTCTTCTTCTTCGGCGTAGTTTTTTCCCCGGC-TTGAAAAATGGGTCTAT 119
Query 116 CCTTCGGAAAGTTGTTCAGCAGGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGG 175
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCTTCGGAAAGTTGTTCAGCAAGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGG 179
Query 176 GTCTCGATGCTGCTGGTAAGACTACGATCCTGTACAAGCTCAAGCTTGGAGAGATTGTGA 235
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 180 GTCTCGATGCAGCTGGTAAGACTACGATCTTGTACAAGCTCAAGCTTGGAGAGATCGTGA 239
Query 236 CTACGATCCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTA 295
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTACGATTCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTA 299
Query 296 CTGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGA 355
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGA 359
Query 356 ACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCA 419
Query 416 GGGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTCCTGGTCT 475
| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 420 GAGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTTCTCGTTT 479
Query 476 TTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACTGACAAGCTTG 535
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 480 TTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACCGATAAGCTTG 539
Query 536 GACTTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GACTTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAG 599
Query 596 AAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGG 646
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGG 650
> AT2G47170.1 | Symbols: ARF1A1C | Ras-related small GTP-binding
family protein | chr2:19366623-19368840 FORWARD LENGTH=1036
Length=1036
Score = 713 bits (386), Expect = 0.0
Identities = 567/652 (87%), Gaps = 21/652 (3%)
Strand=Plus/Plus
Query 9 ACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCG--ACAGTGTTA-AGTC-T 64
|||||||||| ||| || ||||||||||||||||||||| | || | | || | |
Sbjct 73 ACGTTCGAAGGCCA----TT-TTCTTTGGACGACCATCGGCGTTA-AG-GAGAGAG-CTT 124
Query 65 AGGTCTTC-T-TCTTCG-GCGTA-GtttttttCCCGCTTTGA--AATATGGGGCTGTCCT 118
|| || || | | ||| ||| | ||| |||||| || |||| || |||||| |||| |
Sbjct 125 AGATC-TCGTGCCGTCGTGCG-ACGTTGTTTTCCGGC-TTGATCAAAATGGGGTTGTCAT 181
Query 119 TCGGAAAGTTGTTCAGCAGGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGGGTC 178
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 182 TCGGAAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGTTGGTC 241
Query 179 TCGATGCTGCTGGTAAGACTACGATCCTGTACAAGCTCAAGCTTGGAGAGATTGTGACTA 238
||||||||||||||||||| || ||||| ||||||||||| ||||||||||| || || |
Sbjct 242 TCGATGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGTCACCA 301
Query 239 CGATCCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTACTG 298
| || ||||||||||| ||||| || |||||||| |||||||||||||| ||||| || |
Sbjct 302 CTATTCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTTCACCG 361
Query 299 TGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGAACA 358
|||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 362 TGTGGGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCAGAACA 421
Query 359 CTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCAGGG 418
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 422 CACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGCCAGGG 481
Query 419 ATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTCCTGGTCTTTG 478
| ||||||||||| ||| |||| || ||||| ||||| ||||| || || || || ||||
Sbjct 482 ACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGTATTTG 541
Query 479 CTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACTGACAAGCTTGGAC 538
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 542 CTAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCTTGGGC 601
Query 539 TTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAGAAG 598
|||| ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 602 TTCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGGAGAAG 661
Query 599 GGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGGTATA 650
| || ||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 662 GACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGGCATA 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5