BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475716 Length=1146 Score E Sequences producing significant alignments: (Bits) Value AT1G66140.1 | Symbols: ZFP4 | zinc finger protein 4 | chr1:2461... 1467 0.0 > AT1G66140.1 | Symbols: ZFP4 | zinc finger protein 4 | chr1:24619837-24622004 REVERSE LENGTH=1250 Length=1250 Score = 1467 bits (794), Expect = 0.0 Identities = 1074/1198 (90%), Gaps = 64/1198 (5%) Strand=Plus/Plus Query 1 Actctctcctcttttgtgctcccaaaccaaacat---a-t--c------a--ctcact-t 45 |||||||||||||||||||||||||||||||||| | | | | ||| || | Sbjct 1 ACTCTCTCCTCTTTTGTGCTCCCAAACCAAACATAACACTCACAATTTAACTCTCTCTGT 60 Query 46 ctctctctcatatctctcacttcttctctttcttTTTAAGTCCCCAAAAATAACCTCGCT 105 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 CTCTCTCTCATATCTCTCACTTCTTCTCTTTCTTTTTAAGTCCCC-AAAATAACCTCGAG 119 Query 106 ATCGATGGACTCAAATCTGTTCATAACTCCTAGTTCTTCTCTCAAATTCCAAGCCTTTGT 165 |||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || Sbjct 120 ATCGATGGACTCAAATCTGTTCATAACTCCCACTTCTTCTCTCAAATCCCAAGCCTTGGT 179 Query 166 CTCCTCATCATCCTAACTAT-GCAGAAAACGaaaaaaaCAACGTTAAGTTTCTGCCAGAA 224 ||| |||||||||||||||| |||||| | |||||||||||| |||||||||||| || Sbjct 180 CTCTTCATCATCCTAACTATATAAGAAAAAG-AAAAAACAACGTAAAGTTTCTGCCATAA 238 Query 225 ATCATGAGACCAATATTAGACCTCGAAGTTGAAGCTTCATCGGACAGTAGCAGCAGCCAA 284 ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 239 ATCATGAGACCAATATTAGACCTCGAAATTGAAGCTTCATCGGGCAGTAGTAGCAGCCAA 298 Query 285 GTGGCCTCAAACTTGTCTCCGGTTGGGGAAGATTACAAACCAATCTCGCTGAATCTTAGC 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GTGGCCTCAAACTTGTCTCCGGTTGGGGAAGATTACAAACCAATCTCGCTGAATCTTAGC 358 Query 345 CTCTCTTT------CAACAACAAC---AATCTTGATCTTGAATCATCGTCTTTGACGTTG 395 ||| ||| |||||||||| ||||| |||||||||||||||||||||||| || Sbjct 359 CTCAGTTTCAACAACAACAACAACAATAATCTGGATCTTGAATCATCGTCTTTGACGCTG 418 Query 396 CCACTTTCGAGCACGAGTGAGAGTAGCAACCCGGAACAGCAACAGCAACAACAACCGTCA 455 |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || Sbjct 419 CCACTTTCGAGCACGAGTGAGAGTAGTAACCCGGAGCAGCAGCAGCAACAACAACCATCT 478 Query 456 GTATCGAAGCGAGTCTTTTCTTGTAACTACTGCCAAAGGAAGTTCTATAGCTCTCAAGCC 515 ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GTATCAAAGAGAGTCTTCTCTTGTAACTACTGCCAAAGGAAGTTCTATAGCTCTCAAGCG 538 Query 516 CTTGGTGGTCACCAAAACGCTCATAAACGTGAGAGAACACTCGCCAAACGCGCTATGCGT 575 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 539 CTAGGTGGTCACCAAAACGCTCACAAACGTGAGAGAACACTCGCCAAACGCGCTATGCGT 598 Query 576 ATGGGTCTCGCTGGGGTCTTCCCCAGTAGAGGATCAAGTAGTAGCTA--C-GCGGCTGCC 632 |||||||| ||||||||||||||| |||||||||||||||| | || | || |||||| Sbjct 599 ATGGGTCTTGCTGGGGTCTTCCCCGGTAGAGGATCAAGTAGCAATTATGCGGCTGCTGCC 658 Query 633 ACAGCAGCCGCTCTCTCGTGTTTGCCACTTCATGGAAGCGGAAACGGTAATATGACATCA 692 |||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||| Sbjct 659 ACAGCAGCCGCTCTCTCGTGTTTGCCGCTTCACGGAAGCGGAAACGGGAACATGACATCG 718 Query 693 TTCAGGACTTTGGGAATTCGGGCACATGCCTCGTCCCACGACGTCGGCATGACAAGGCAG 752 ||||||||||||||||| ||||||||| ||||| | ||||||||| |||||||||||||| Sbjct 719 TTCAGGACTTTGGGAATCCGGGCACATTCCTCGGCGCACGACGTCAGCATGACAAGGCAG 778 Query 753 ACACCAGAAACGA-TTATTAGAAATATTGCCAGGTTCAACCAGGGGTATTTCGGTAATTG 811 ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 779 ACACCAGAAAC-ACTTATTAGAAACATTGCCAGGTTCAACCAGGGGTATTTCGGTAATTG 837 Query 812 TATACCTTTTTACGTTGAGGACGACGAGGCCGAGATGCTCTGGCCAGGGAGTTTCAGGCA 871 ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 838 TATACCTTTTTACGTGGAGGACGACGAGGCCGAGATGCTCTGGCCGGGGAGTTTCCGGCA 897 Query 872 AGCAACGGATGCGGTTGCGGTTGAAGCGGGTAATGATGATTTAGGTGAAAGAAAAATGGA 931 ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 898 AGCTACGAATGCGGTTGCGGTTGAAGCGGGTAATGATAATTTAGGTGAAAGAAAAATGGA 957 Query 932 TTTCTTGGACGTCAAGCAAGCGGTGGATATGGAGAGTTCTCTTCCAGATCTAACCTTGAA 991 |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 958 TTTCTTGGACGTCAAGCAAGCGATGGATATGGAAAGTTCTCTTCCAGATCTAACCTTGAA 1017 Query 992 ACTTTGAG----C------------------TTT-CTGAATGTGGATTCTTAATTTGGTT 1028 ||||||| | ||| |||||| |||||||||||||||| | Sbjct 1018 GCTTTGAGCTTTCGTTTTTTTTGTTTTTTTTTTTGCTGAATTTGGATTCTTAATTTGG-T 1076 Query 1029 GCATCAGCTTCATAACTCTATTATGTACAGTGAGAGTTTCACAAACCATTTCCGATATGT 1088 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1077 GCATCAGCTTCATAACTCTATTATGTACAGTGAGAGTTTCACAAACCATTTCTGATATGT 1136 Query 1089 TATCATTATATGGTCACTATCGATTGATCGACTAAAAGTCAATTCTAGTGTTTGCTTA 1146 ||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1137 TAT--------GGTCACTATCGATTGATCGACCAAAAGTCAATTCTAGTGTTTGCTTA 1186 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56224610400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5