BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475717
Length=3226
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66150.1 | Symbols: TMK1 | transmembrane kinase 1 | chr1:246... 4689 0.0
> AT1G66150.1 | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631409-24634749
FORWARD LENGTH=3257
Length=3257
Score = 4689 bits (2539), Expect = 0.0
Identities = 3037/3271 (93%), Gaps = 59/3271 (2%)
Strand=Plus/Plus
Query 1 GGCCCATCTTCCCATTTCCTAAAAGCTTCAAACTTTATTCACActtctctctctatctct 60
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 1 GGCCCATCTTCCCATTTCCTAAAAGCTTCAAACTTTCTTCACATTTCTCTCTTTATCTCT 60
Query 61 ctgtttcctcttc-ttcctctgtttcttcAAGCTATGAAGAAAAGAAGAACCTTTC-TCA 118
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTGTTTCTTCTTCAATCCTCTGTTTCTTCAAGCTATGAAGAAAAGAAGAACCTTTCTTC- 119
Query 119 CGTTTTCGTTTA-----C--C-T-TTC--T-TC--T-TAAATCTGACTCTGATGGAGATC 163
||||| |||| | | | ||| | || | |||| |||| |||||||||||||
Sbjct 120 TATTTTCATTTACCTTTCTTCTTCTTCTATCTCTTTCTAAAGCTGATTCTGATGGAGATC 179
Query 164 TCTCAGCGATGATATCACTCAAGAAAAGCTTAAACCCACCAAGTTCTTTCGGTTGGTCTG 223
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TCTCAGCGATGTTATCACTCAAGAAAAGCTTAAACCCACCCAGTTCTTTCGGTTGGTCTG 239
Query 224 ACCCAGACCCGTGTAAATGGACTCACATCGTTTGTACCGGAACAAAACGTGTGACCCGGA 283
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 ACCCTGACCCATGTAAATGGACTCACATCGTTTGTACAGGAACAAAACGTGTGACCCGGA 299
Query 284 TCCAAATCGGGCATTCGGGTCTTCAAGGTACACTTTCTCCTGATCTACGTAACTTATCAG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCCAAATCGGGCATTCGGGTCTTCAAGGTACACTTTCTCCTGATCTACGTAACTTATCAG 359
Query 344 AGCTTGAAAGACTTGAGCTTCAATGGAACAACATCTCTGGTCCTGTTCCTTCTTTAAGTG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGCTTGAAAGACTTGAGCTTCAATGGAACAACATCTCTGGTCCTGTTCCTTCTTTAAGTG 419
Query 404 GTTTAGCTTCATTACAAGTCTTGATGTTAAGTAATAACAACTTTGATTCAATCCCTAGTG 463
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 420 GTTTAGCTTCATTACAAGTCTTGATGTTAAGTAACAACAACTTTGATTCTATCCCTAGTG 479
Query 464 ATGTCTTTGAAGGCTTAACTTCGTTACAATCTGTAGAAATTGATAACAATCCTTTTAA-A 522
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 ATGTCTTTCAAGGTTTAACTTCGTTACAATCTGTAGAAATTGATAACAATCCTTTTAAGA 539
Query 523 GCTTGGGAGATTCCAGAGAGTTTGAGAAATGCTTCTGCTCTTCAGAATTTCTCGGCGAAT 582
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 540 G-TTGGGAGATTCCAGAGAGTTTGAGAAATGCTTCTGCTCTTCAGAATTTCTCTGCTAAT 598
Query 583 TCGGCTAATGTTTCCGGTAAATTACCCGGTTTTTTCGGACCGGATGAGTTTCCGGGGTTG 642
|||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||
Sbjct 599 TCGGCTAATGTTTCCGGTTCTTTACCCGGTTTTCTCGGACCGGATGAGTTTCCCGGTTTG 658
Query 643 TCGATTTTGCATTTGGCTTTCAATAACTTAGAAGGAGAGTTGCCTTTGAGTTTAGCTGGC 702
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 659 TCGATTTTGCATTTGGCTTTCAACAACTTAGAAGGAGAGTTGCCTATGAGTTTAGCTGGC 718
Query 703 TCGCAGGTTCAGTCATTGTGGCTTAATGGTCAGAAACTAACCGGTGAGATTAATGTTCTT 762
|| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 719 TCTCAGGTTCAGTCATTGTGGCTCAATGGTCAGAAACTAACCGGTGATATTACTGTTCTT 778
Query 763 CAGAATATGACTGGTTTGAAAGAGGTTTGGGTTCATTCCAACGCGTTTTCGGGTCCTTTA 822
||||| ||||||||||| |||||||||||| |||| |||||| ||||||||||||||||
Sbjct 779 CAGAACATGACTGGTTTAAAAGAGGTTTGGCTTCACTCCAACAAGTTTTCGGGTCCTTTA 838
Query 823 CCGGACTTTTCGGGTCTTAAGGAGCTTGAGAGTTTGAGTTTGAGGGATAACGCGTTCACG 882
|||||||||||||||||||||||||||||||| ||||||||||| |||||| | || ||
Sbjct 839 CCGGACTTTTCGGGTCTTAAGGAGCTTGAGAGCTTGAGTTTGAGAGATAACTCCTTTACA 898
Query 883 GGTCCGGTTCCTGCGTCTTTGTTAAGTCTTGAGTCGCTTAAAGTTGTGAACTTGACGAAT 942
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 GGTCCAGTTCCTGCGTCTTTGTTAAGTCTTGAGTCACTTAAAGTTGTGAACTTGACGAAT 958
Query 943 AATCATCTTCAAGGACCAGTTCCTGTGTTTAAGAGCTCGGTTTCGGTTGATTTGGATAAA 1002
|||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 959 AATCATCTACAAGGACCAGTGCCTGTGTTTAAGAGCTCTGTTTCAGTTGATTTGGATAAA 1018
Query 1003 GATTCCAATAGCTTTTGCTTGTCTAGTCCTGGTGAGTGTGATTCTAGAGTGAAGTCTTTG 1062
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1019 GATTCTAACAGCTTTTGCTTGTCTAGTCCTGGTGAGTGTGATCCTAGAGTGAAGTCTTTG 1078
Query 1063 CTTTTGATAGCTAGTTCATTTGATTATCCGCAGCGGCTCGCTGAGAGTTGGAAAGGAAAT 1122
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1079 CTTTTGATAGCTAGTTCATTCGATTATCCGCCCCGGCTCGCTGAGAGTTGGAAAGGAAAC 1138
Query 1123 GATCCTTGCACGAATTGGATTGGGATAGCTTGTAGCAATGGGAACATTACTGTTATTAAT 1182
|||||||| || || ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1139 GATCCTTGTACTAACTGGATTGGGATAGCTTGTAGCAATGGGAACATTACTGTTATCAGT 1198
Query 1183 CTTGAGAAAATGGGTCTAACCGGGACGATTTCTCCCGAGTTTGGATCCATTAAATCGCTT 1242
||||||||||||| |||||||||||||||||||||||||||||| | || || ||||||
Sbjct 1199 CTTGAGAAAATGGAACTAACCGGGACGATTTCTCCCGAGTTTGGAGCGATCAAGTCGCTT 1258
Query 1243 CAAAGAATCATTCTTGGTATCAACAATCTTACGGGTACGATTCCTCAAGAGCTAACAACG 1302
|||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 1259 CAAAGAATCATTCTTGGTATCAACAATCTTACTGGTATGATTCCTCAAGAGCTTACAACG 1318
Query 1303 TTACCAAATCTCAAAACACTCGATGTTTCGAGTAACAAGCTTTTCGGGAAGGTCCCAGGT 1362
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1319 TTACCTAATCTCAAAACACTCGATGTTTCGAGTAACAAGCTTTTCGGGAAGGTCCCGGGT 1378
Query 1363 TTTAGAAGCAATGTGGTTGTGAGTACTAATGGTAATCCTGACATTGGAAAGGATAAAAGC 1422
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTTAGAAGCAATGTTGTTGTGAATACTAATGGTAATCCTGACATTGGAAAGGATAAAAGC 1438
Query 1423 TCTTTGCCTTCTCCCGGTTCTTCTTCGCCTTCAGGTGGTTCGGGGTCAGGAATCAACGGT 1482
|||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1439 TCTTTGTCTTCTCCTGGTTCTTCTTCGCCTTCAGGTGGTTCGGGTTCAGGTATCAACGGT 1498
Query 1483 GATAAGGACAGGAGAGGAATGAAGTCTTCGACTTTTATAGGTATCATTCTTGGTTCAGTT 1542
||||| ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1499 GATAAAGACCGGAGAGGAATGAAGTCTTCGACTTTTATAGGAATCATTGTTGGTTCAGTT 1558
Query 1543 CTTGGAGGTCTATCATCAATCTTCATGATTGGTTTATTAGTTTTCTGCTGGTACAAAAAG 1602
||||||||| | | |||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1559 CTTGGAGGTTTGTTATCAATCTTCTTGATTGGTTTGTTAGTTTTCTGTTGGTACAAAAAG 1618
Query 1603 AGGCAAAAGTG-TAACACAAGAGGTGAGAGCTCAAATGCAGTTGTGGTGCATCCGCGACA 1661
||||| ||| | | | || || ||||||||||||||||||| |||||||||||||||||
Sbjct 1619 AGGCAGAAGAGATT-CTCAGGAAGTGAGAGCTCAAATGCAGTAGTGGTGCATCCGCGACA 1677
Query 1662 TTCGGGGTCTGACAATGAGAGCGTTAAGATCACAGTTGCGGGTTCAAGTGTAAGCGTTGG 1721
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1678 TTCGGGGTCTGACAATGAGAGTGTTAAGATTACAGTTGCGGGTTCAAGCGTAAGCGTTGG 1737
Query 1722 AGGCATAAGTGATACCTACACGCTTCCTGGTACGAGCGAGGTAGGAGATAATATCCAAAT 1781
||| ||||||||||| || |||||||||||||| || ||||| ||||||||||| |||||
Sbjct 1738 AGGGATAAGTGATACTTATACGCTTCCTGGTACAAGTGAGGTTGGAGATAATATTCAAAT 1797
Query 1782 GGTGGAAGCAGGAAACATGCTGATCTCAATCCAAGTGCTTCGTTCTGTGACTAACAACTT 1841
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1798 GGTGGAAGCAGGAAACATGCTGATATCAATCCAAGTGCTTCGTTCTGTGACTAACAACTT 1857
Query 1842 CAGTGCAGATAACATT-TTGGGATCAGGAGGTTTCGGGGTTGTGTATAAAGGCGAATTGC 1900
|||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1858 CAGTTCAGATAACATTCTTGG-ATCAGGAGGTTTCGGGGTTGTGTATAAAGGCGAGTTGC 1916
Query 1901 ACGATGGAACAAAGATCGCGGTTAAGAGAATGGAGAATGGTGTGATTGTTGGTAAAGG-T 1959
|||||||||| ||||| ||||||||||||||||||||||| || |||| ||||||||| |
Sbjct 1917 ACGATGGAACGAAGATTGCGGTTAAGAGAATGGAGAATGGAGTTATTGCTGGTAAAGGCT 1976
Query 1960 TTCGCGGAGTTCAAGTCAGAGATTGCGGTTTTAACAAAGGTTAGGCATCGCCATTTGGTT 2019
|| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1977 TT-GCGGAGTTTAAATCAGAGATTGCGGTTTTAACAAAGGTTAGGCATCGTCATTTGGTT 2035
Query 2020 ACGCTTCTCGGTTATTGTTTGGACGGGAACGAGAAGCTACTTGTGTATGAGTATATGCCT 2079
|||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct 2036 ACGCTTCTTGGTTATTGTTTGGATGGGAATGAGAAGTTACTTGTGTATGAGTATATGCCT 2095
Query 2080 CAAGGGACATTGAGTAGGCATTTGTTTGAGTGGTCAGAGGAAGGACTTAAGCCTCTGTTG 2139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 CAAGGGACATTGAGTAGGCATTTGTTTGAGTGGTCAGAGGAAGGACTTAAGCCTCTGTTG 2155
Query 2140 TGGAAACAGAGATTGACTTTAGCCTTGGATGTTGCAAGAGGTGTGGAGTATCTCCATGGA 2199
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2156 TGGAAACAGAGATTGACTTTAGCTTTGGATGTTGCTAGAGGTGTGGAGTATCTCCATGGA 2215
Query 2200 TTAGCTCACCAGAGCTTCATTCACAGGGATCTTAAGCCTTCCAACATTCTTCTTGGCGAT 2259
||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||
Sbjct 2216 TTAGCTCACCAGAGCTTTATACACAGGGATCTTAAGCCTTCTAACATTCTTCTTGGGGAT 2275
Query 2260 GATATGCGGGCGAAAGTTGCAGACTTTGGACTCGTTCGTCTCGCTCCAGAAGGGAAAGGA 2319
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2276 GATATGAGGGCGAAAGTTGCAGACTTTGGACTCGTTCGTCTCGCTCCTGAAGGAAAAGGA 2335
Query 2320 TCGATTGAAACCAGAATTGCAGGAACATTTGGTTACTTGGCGCCCGAGTATGCAGTAACG 2379
|||||||| || ||||| || |||||||||||||||||||| ||||| || |||||||||
Sbjct 2336 TCGATTGAGACTAGAATCGCTGGAACATTTGGTTACTTGGCACCCGAATACGCAGTAACG 2395
Query 2380 GGTCGAGTGACAACGAAGGTCGATGTGTACAGTTTCGGGGTAATTCTAATGGAACTCATA 2439
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 2396 GGTCGAGTGACAACGAAGGTCGATGTATACAGCTTCGGGGTAATCCTAATGGAACTCATA 2455
Query 2440 ACAGGAAGAAAATCTCTAGACGAATCGCAACCAGAAGAGAGCATTCACTTAGTCTCCTGG 2499
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 2456 ACGGGAAGAAAATCTCTAGACGAATCGCAACCAGAAGAAAGCATTCACTTGGTCTCTTGG 2515
Query 2500 TTCAAACGGATGTACATCAACAAAGAATCATCATTCAAGAAAGCAATCGACCCGACAATA 2559
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 2516 TTCAAACGGATGTACATCAACAAAGAAGCATCATTCAAGAAAGCGATCGACACGACAATA 2575
Query 2560 GACCTAGACGAAGAAACCCTAGCCAGCGTTCACACTGTTGCTGAACTAGCAGGCCATTGC 2619
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 GACCTAGACGAAGAAACCTTAGCCAGCGTTCACACTGTTGCTGAACTAGCAGGCCATTGC 2635
Query 2620 TGTGCCCGTGAACCATACCAGAGACCAGACATGGGACACGCAGTCAACATTCTGTCTTCA 2679
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2636 TGTGCCCGTGAGCCTTACCAGAGACCAGACATGGGACACGCAGTCAACATTCTGTCATCA 2695
Query 2680 CTCGTCGAGCTATGGAAACCATCGGATCAGAACCCTGAAGACATATACGGTATCGATCTC 2739
||||| |||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 2696 CTCGTTGAGCTATGGAAACCGTCGGATCAGAATCCAGAAGACATATATGGTATCGATCTC 2755
Query 2740 GACATGTCTTTGCCACAAGCACTTAAGAAATGGCAAGCTTATGAAGGAAGAAGTGATCTC 2799
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2756 GACATGTCTTTACCTCAAGCACTTAAGAAATGGCAAGCTTATGAAGGAAGAAGTGATCTC 2815
Query 2800 GAATCTTCGACTTCATCGCTTTTACCTAGCTTGGACAACACGCAGATGAGTATTCCCACT 2859
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2816 GAATCTTCAACTTCATCACTTTTACCTAGCTTGGACAACACGCAGATGAGTATTCCCACT 2875
Query 2860 AGACCATACGGATTCGCAGAGTCATTCACTTCAGTAGATGGACGATGAATGAGATTTTC- 2918
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2876 AGACCTTACGGATTCGCAGAGTCATTCACTTCAGTAGATGGACGATGAATGAGAGATTCC 2935
Query 2919 T-----CCT---TTTG-TATAT-T--------AT-TT-GTGTTTCCTCTCCTCTTCTTCC 2958
| || |||| | | | | || || ||||||||||||||||||||||
Sbjct 2936 TTGAAACCCAGATTTGATTTTTCTCCTTTTGTATATTTGTGTTTCCTCTCCTCTTCTTCC 2995
Query 2959 C-TCACAATTCTTTCATGTTTCTTGTGATGCAAGTAACATTTAGGGCTTAATTTGGGTTT 3017
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2996 CCTCACAATTCTTTCATGTTTCTTGTGATGCAAGTAACATTTAGGGCTTAATTTGGGTGT 3055
Query 3018 CTTAATTAGTATTT-GATGTTGAGTGttttattttattttttgttttGTTGATTTAGAAA 3076
|||||| | ||||| ||||||||||||||||||| || |||| |||||||||||||
Sbjct 3056 CTTAAT-ATTATTTTGATGTTGAGTGTTTTATTTG-TTG---GTTT-GTTGATTTAGAAA 3109
Query 3077 AGTTGACGTGTGTACTTAAAGTTTGTTTGGAAATGGTAAATGACAGTGAGGTAGAGAGAG 3136
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 3110 AGTTGACGTGTGTACTTCAAGTTTGTG-GGAAATGGTAAATGACAGTGAGGTAGAGAG-G 3167
Query 3137 GTTGGCTTTGGATCCATCTTCACATGGCTGTCTCTTTTGTTTGGATCTTCATTTTTTAA- 3195
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3168 -TTGGCATTGGATCCATCTTCACATGGCTGTCTCTTTTGTTTGGATCTTCATTTTTTAAA 3226
Query 3196 TATCTTTATAAATTGACATCTACTTGATCTC 3226
|||||||||||||||||||| ||||||||||
Sbjct 3227 TATCTTTATAAATTGACATCAACTTGATCTC 3257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160484050657
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5