BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475723 Length=1429 Score E Sequences producing significant alignments: (Bits) Value AT1G66200.3 | Symbols: GSR2, GLN1;2 | glutamine synthase clone ... 1639 0.0 AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutam... 1247 0.0 AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synt... 712 0.0 > AT1G66200.3 | Symbols: GSR2, GLN1;2 | glutamine synthase clone F11 | chr1:24655499-24657683 REVERSE LENGTH=1282 Length=1282 Score = 1639 bits (887), Expect = 0.0 Identities = 1131/1240 (91%), Gaps = 51/1240 (4%) Strand=Plus/Plus Query 1 GTACTACCACAACCACGAACTCCAAAACATCATCTCA-T-A-AACCA-AAAACACACAAT 56 |||||||||||||||||||||| ||| |||||||||| | | || | |||||||||||| Sbjct 46 GTACTACCACAACCACGAACTCTAAAGCATCATCTCATTAACAAAAATAAAACACACAAT 105 Query 57 CTC---A------A------ATTACAAAGAATCAATCTTCTTGTTCCTTTTTGCAACCAT 101 ||| | | |||||||||| |||||||||||||| ||| |||||||||| Sbjct 106 CTCAAGATTTTCTACTTCTTATTACAAAGATTCAATCTTCTTGTTTCTTCTTGCAACCAT 165 Query 102 GAGTCTTCTTGCAGATCTTGTTAACCTTGACCTCTCAGACAACAGTGAAAAGATCATCGC 161 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 166 GAGTCTTCTTGCAGATCTTGTTAACCTTGACATCTCAGACAACAGTGAAAAGATCATCGC 225 Query 162 TGAATACATATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGCCAGGACTCTATC 221 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 226 TGAATACATATGGGTTGGTGGTTCTGGTATGGACATGAGAAGCAAAGCCAGGACTCTCCC 285 Query 222 AGGTCCTGTGACCGATCCATCGAAACTTCCGAAA-TGGAACTATGATGGTTCAAGCACTG 280 || ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 286 TGGACCTGTGACCGATCCATCAAAACTTCC-AAAGTGGAACTATGATGGTTCAAGCACTG 344 Query 281 GTCAAGCTCCTGGTAAAGATAGTGAAGTGATCTTATACCCTCAAGCGATTTTCAAAGATC 340 |||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 345 GTCAAGCTCCTGGTCAAGACAGTGAAGTGATCTTATACCCTCAAGCAATTTTCAAAGATC 404 Query 341 CGTTCCGTAGAGGCAACAACATTCTT------GTT----AT-G-TGTGAT--GCTTAC-- 384 | |||||||||||||||||||| ||| ||| || | | |||| | ||| Sbjct 405 CATTCCGTAGAGGCAACAACATCCTTATTAACGTTTTTTATCGGTTTGATCAGGTTATGT 464 Query 385 ---A--CT--C-CT---GCGGGCGAGCCAATCCCTACGAACAAGCGACATGCTGCAGCTG 433 | || | || ||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 465 GTGATGCTTACACTCCAGCGGGAGAGCCAATCCCTACTAACAAGCGACATGCTGCGGCTG 524 Query 434 AGATCTTTGCTAACCCTGCTGTTGTAGCTGAAGTGCCATGGTATGGAATCGAACAAGAAT 493 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 525 AGATCTTTGCTAACCCTGATGTTATTGCTGAAGTGCCATGGTATGGAATCGAACAAGAAT 584 Query 494 ACACTTTGTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTACCCTG 553 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 585 ACACTTTGTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTTCCCTG 644 Query 554 GCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTG 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 GCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTG 704 Query 614 TTGATGCTCACTACAAGGCTTGTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAG 673 |||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| Sbjct 705 TTGATGCTCACTACAAAGCCTCTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAG 764 Query 674 AAGTCATGCCGGGTCAGTGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTTCTG 733 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 765 AAGTCATGCCGGGACAATGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTGCTG 824 Query 734 ATGAAGTGTGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTG 793 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 ATGAAATATGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTG 884 Query 794 TATCTTTTGACCCGAAACCGATCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACT 853 ||||||||||||| ||||| || || ||||| ||||| |||||||||||||||||||| | Sbjct 885 TATCTTTTGACCCAAAACCTATTCCTGGTGACTGGAATGGAGCTGGTGCTCACACCAATT 944 Query 854 ACAGTACTAAATCGATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATTGAGA 913 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 945 ACAGTACTAAATCAATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATCGAGA 1004 Query 914 AGCTCGGACTA-AGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGT 972 |||| || || |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1005 AGCTTGG-CTTGAGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGTCGT 1063 Query 973 CTCACGGGACACCATGAAACCGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGT 1032 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1064 CTCACGGGACACCATGAAACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGT 1123 Query 1033 GGAGCATCGATCCGAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGAT 1092 || |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 1124 GGTGCATCGATCCGAGTAGGACGTGACACCGAGAAAGAAGGGAAGGGATACTTTGAGGAT 1183 Query 1093 AGGAGGCCAGCTTCAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGACTACA 1152 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1184 AGGAGGCCAGCTTCAAACATGGACCCTTACGTTGTTACTTCCATGATTGCAGAGACTACA 1243 Query 1153 CTCCTCTGGAAACCTTGAAAAGGATGATCCATAAATCTTG 1192 ||||||||||| |||||||| ||||||||| ||| ||||| Sbjct 1244 CTCCTCTGGAACCCTTGAAA-GGATGATCCGTAACTCTTG 1282 > AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine synthase clone R1 | chr5:14933336-14935841 REVERSE LENGTH=1494 Length=1494 Score = 1247 bits (675), Expect = 0.0 Identities = 950/1085 (88%), Gaps = 10/1085 (1%) Strand=Plus/Plus Query 91 TTTGCAACCATGAGTCTTCTTGCAGATCTTGTTAACCTTGACCTCTCAGACAACAGTGA- 149 |||| | ||||||||||| || ||||||| | |||||| ||||||||||| || ||| Sbjct 177 TTTGTAGCCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACTCCACTGAC 236 Query 150 AAAGATCATCGCTGAATACATATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGC 209 ||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 237 AAA-ATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGACATGAGAAGCAAAGC 295 Query 210 CAGGACTCTATCAGGTCCTGTGACCGATCCATCGAAACTTCCGAAA-TGGAACTATGATG 268 |||||||||| | || || ||||| || || ||| | || || ||| ||||||||||||| Sbjct 296 CAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACC-AAAGTGGAACTATGATG 354 Query 269 GTTCAAGCACTGGTCAAGCTCCTGGTAAAGATAGTGAAGTGATCTTATACCCTCAAGCGA 328 |||||||||| || |||||||||||| |||| |||||||| ||||||||||||||||| | Sbjct 355 GTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAGCCA 414 Query 329 TTTTCAAAGATCCGTTCCGTAGAGGCAACAACATTCTTGTTATGTGTGATGCTTACACTC 388 | ||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 415 TATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGCGATGCGTACACTC 474 Query 389 CTGCGGGCGAGCCAATCCCTACGAACAAGCGACATGCTGCAGCTGAGATCTTT-GCTAAC 447 | ||||| || |||||||| || ||||| |||| ||||| ||| || ||||| || ||| Sbjct 475 CCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGCTAAGGTCTTTAGC-AAC 533 Query 448 CCTGCTGTTGTAGCTGAAGTGCCATGGTATGGAATCGAACAAGAATACACTTTGTTGCAG 507 |||| ||||| ||||||||||||||||||||| || || |||||||||||||| | ||| Sbjct 534 CCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAATACACTTTACTCCAG 593 Query 508 AAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTA-CCCTGGCCCTCAGGGACC 566 || |||||||| |||||| |||| ||||| |||||||| || ||| |||||||||||||| Sbjct 594 AAAGATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTATCCC-GGCCCTCAGGGACC 652 Query 567 ATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTGTTGATGCTCACTA 626 ||||| ||| |||||||||| |||||||||||||| ||||| |||||||| ||||||| Sbjct 653 GTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGCAGAGATGTTGTTGATTCTCACTA 712 Query 627 CAAGGCTTGTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAGAAGTCATGCCGGG 686 |||||| || || || ||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 713 CAAGGCCTGCTTATACGCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGGG 772 Query 687 TCAGTGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTTCTGATGAAGTGTGGAT 746 ||||||||||||||| ||||| ||| | || |||||||| ||| |||||||| | ||| | Sbjct 773 TCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCTGCTGATGAAATTTGGGT 832 Query 747 CGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTGTATCTTTTGACCC 806 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 833 CGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTAGTGGTATCTTTTGACCC 892 Query 807 GAAACCGA-TCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACTACAGTACTAAAT 865 |||||||| |||| ||||| |||||||| |||||||||||| |||||||||||| || | Sbjct 893 GAAACCGATTCCC-GGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGT 951 Query 866 CGATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATTGAGAAGCTCGGACTAA 925 | |||||||||||||| || |||||||| |||||||| || || || || | ||||| | Sbjct 952 CAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGAAAGCAATCGATAAATTGGGACTGA 1011 Query 926 GACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGTCTCACGGGACACC 985 ||||||| ||||||||| | |||||||||||||| || ||||| |||||||| ||||||| Sbjct 1012 GACACAAAGAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACC 1071 Query 986 ATGAAACCGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1045 | || || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 ACGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1131 Query 1046 GAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGATAGGAGGCCAGCTT 1105 |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1132 GAGTAGGACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTT 1191 Query 1106 CAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGACTACACTCCTCTGGAAAC 1165 | |||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| | Sbjct 1192 CGAACATGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTCTGGAATC 1251 Query 1166 CTTGA 1170 ||||| Sbjct 1252 CTTGA 1256 > AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synthetase 1.3 | chr3:6097414-6099595 FORWARD LENGTH=1341 Length=1341 Score = 712 bits (385), Expect = 0.0 Identities = 847/1064 (80%), Gaps = 56/1064 (5%) Strand=Plus/Plus Query 113 CAGATCTTGTTAACCTTGACCTCTCAGA--CAACAGTGAAAAGATCATCGCTGAATACAT 170 ||||||| |||||||| ||||| | || | || | | ||| |||||||| |||||||| Sbjct 103 CAGATCTCGTTAACCTCAACCTCACCGATGCCACCG-GGAAA-ATCATCGCCGAATACAT 160 Query 171 ATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGCCAGGACTCTATCAGGTCCTGT 230 |||| | ||||| ||||| || || || ||||||||||||||||| ||| |||| || || Sbjct 161 ATGGATCGGTGGATCTGGAATGGATATCAGAAGCAAAGCCAGGACACTACCAGGACCAGT 220 Query 231 GACCGATCCATCGAAA-CTTCCGAAATGGAACTATGATGGTTCAAGCACTGGTCAAGCTC 289 ||| |||||||| ||| ||||| || |||||||| || || || ||||| ||||| ||| Sbjct 221 GACTGATCCATC-AAAGCTTCCCAAGTGGAACTACGACGGATCCAGCACCGGTCAGGCTG 279 Query 290 CTGGTA-AAGATAGTGAAGTGA-TCTTATACCCTCAAGCGATTTTCAAAGATCCGTTCCG 347 |||| | |||| |||||||| | || |||||||||| || || ||||| ||||| ||| | Sbjct 280 CTGG-AGAAGACAGTGAAGTCATTC-TATACCCTCAGGCAATATTCAAGGATCCCTTCAG 337 Query 348 TAGAGGCAACAACATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGCGAGCCAATCCC 407 | |||||||||||| || || ||||||||||||||||| || || || || || || || Sbjct 338 GAAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCC 397 Query 408 TACGAACAAG-CG-ACATGCTGCAGCTGAGATCTT-TGCTAACCCTG-CTGTTG--TAGC 461 || |||||| | ||| | || ||| ||||||| || |||| | | |||| || Sbjct 398 AACCAACAAGAGGCACA-AC-GCTGCTAAGATCTTCAGC-CACCCCGAC-GTTGCCAAG- 452 Query 462 TGAAGTGCCATGGTATGGAATCGAACAAGAATACACTTTGTTGCAGAAGGATGTGAACTG 521 || | ||| |||||||| || || ||||||||||||||| |||| |||||||||||||| Sbjct 453 -GAGGAGCCTTGGTATGGGATTGAGCAAGAATACACTTTGATGCAAAAGGATGTGAACTG 511 Query 522 GCCTCTTGGATGGCCCATTGGTGGCTACCCTGGCCCTCAGGGACCATACTACTGCAGTAT 581 ||| |||| ||||| |||||||||||||||||||||||||||| |||||||| || | Sbjct 512 GCCAATTGGTTGGCCTGTTGGTGGCTACCCTGGCCCTCAGGGACCTTACTACTGTGGTGT 571 Query 582 TGGAGCTGACAAATCTTTTGGAAGAGACATTGTTGATGCTCACTACAAGGCTTGT-TTGT 640 |||||||||||| | |||| | |||||||| ||||||||||||||||| ||| || | Sbjct 572 GGGAGCTGACAAAGCCATTGGTCGTGACATTGTGGATGCTCACTACAAGGCCTGTCTT-T 630 Query 641 ATGCTGGAATCAACATCAGTGGGATCAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCC 700 | || || || || ||| |||||||||||||||||||| || ||||||||||||| Sbjct 631 ACGCCGGTATTGGTATTTCTGGTATCAATGGAGAAGTCATGCCAGGCCAGTGGGAGTTCC 690 Query 701 AAGTCGGCCCATCGGTC-GG-TATCTCAGCTTCTGATGA--A-GTGTGGATCGCTCGTTA 755 |||||||||| | | | || ||| | || ||||| ||| | || ||| | ||||| || Sbjct 691 AAGTCGGCCC-T-GTTGAGGGTAT-T-AG-TTCTGGTGATCAAGTCTGGGTTGCTCGATA 745 Query 756 CATTTTGGAGAGGATCACAGAGAT-TGCTGGTGTGGTTGT-ATCTTTTGACCCGAAACC- 812 | || | ||||||||||| ||||| | ||||||| |||| | ||| ||||||||||| Sbjct 746 CCTTCTCGAGAGGATCACTGAGATCT-CTGGTGTAATTGTCAGCTTC-GACCCGAAACCA 803 Query 813 GATCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACTACAGTACTAA-ATCGATGA 871 | |||||||||| ||||| |||||||| |||||| ||||||||| ||||| | | |||| Sbjct 804 G-TCCCGGGTGACTGGAATGGAGCTGGAGCTCACTGCAACTACAGCACTAAGA-CAATGA 861 Query 872 GGGAA-GAAGGAGGAT-ACGA-GATAATCAAGAAGGCGATTGAGAAGCT-CGGACT-AAG 926 | || || ||||||| | || | | |||||||| ||||| | |||||| | | || || Sbjct 862 GA-AACGATGGAGGATTA-GAAG-TGATCAAGAAAGCGATAGGGAAGCTTCAG-CTGAA- 916 Query 927 ACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGTCTCACGGGACACCA 986 |||||| ||||||||| | ||||||||||||||||||||||| |||||||| ||| | || Sbjct 917 ACACAAAGAACACATTGCTGCTTACGGTGAAGGAAACGAGCGTCGTCTCACTGGAAAGCA 976 Query 987 TGAAACCGCTGACATCAACACTTTC-CTTTGGGGTGTTGCGAACCGTGGAGCATC-GATC 1044 |||||||| ||||||||||| ||| ||| |||| || |||||||||||||| || | | Sbjct 977 CGAAACCGCAGACATCAACACATTCTCTT-GGGGAGTCGCGAACCGTGGAGCGTCAG-TG 1034 Query 1045 CGAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGATAGGAGGCCAGCT 1104 |||| ||||| || || ||||| ||||| ||||| ||||| || || || ||||||||| Sbjct 1035 AGAGTGGGACGTGACACAGAGAAGGAAGGTAAAGGGTACTTCGAAGACAGAAGGCCAGCT 1094 Query 1105 TCAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGAC 1148 || |||||||| |||||| |||| || |||||||| || ||||| Sbjct 1095 TCTAACATGGATCCTTACGTTGTCACCTCCATGATCGCTGAGAC 1138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70431364635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5