BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475728
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66240.1 | Symbols: ATX1, ATATX1 | homolog of anti-oxidant 1... 726 0.0
> AT1G66240.1 | Symbols: ATX1, ATATX1 | homolog of anti-oxidant
1 | chr1:24686256-24687332 REVERSE LENGTH=515
Length=515
Score = 726 bits (393), Expect = 0.0
Identities = 468/504 (93%), Gaps = 6/504 (1%)
Strand=Plus/Plus
Query 2 TTAAAGACTTGTTCCAAAGCCGTATCCTAACAAAAAACTGCAActctctctctctctTTC 61
||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 10 TTAAAGACTTGTTCC-AAGCCGTATCCTATCAAAACACTGCAA--GTCTCTCTCTCTTTC 66
Query 62 AAGCCTTGTCTGTAGTTGAATCGAAAGCTATGTCTCAGACCGTTGTTCTCAGAGTGGAAA 121
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 67 AAGCCTTGTCGGTGGTTGAATCGAAAGCTATGTCTCAGACCGTTGTTCTCAGAGTGGCCA 126
Query 122 TGACATGTGAGGGATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGGCGTGG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGACATGTGAGGGATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGGCGTGG 186
Query 182 AGTCATTTGATGTCGATATAAAGGAGCAGAAAGTGACGGTGAAAGGTAACGTGCAGCCAG 241
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 187 AGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAGGCAACGTGCAGCCAG 246
Query 242 ACGCGGTTTTACAGACGGTGTCAAAAACCGGAAAGAAAACGGCTTTTTGGGAAACCGAGG 301
|||| ||||||||||| ||| | |||||||||||||||||||||||||||||| | || |
Sbjct 247 ACGCAGTTTTACAGACCGTGACGAAAACCGGAAAGAAAACGGCTTTTTGGGAAGCTGAAG 306
Query 302 GTGAAACTGCCAAGGCTTAAGGAGAAGCAGAGCATTTTATGTGATTCTCTGTTTTAATAA 361
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 307 GTGAAACTGCTAAGGCTTAAGGAGAAGCAGATCATTTTATGTGATTCTCTGTTTTAATAA 366
Query 362 AATCTATGTGGAATCGTTTTATT--CTTCTTCTGTTGCTTGTGATTTGTGGCTGAGTGTA 419
|||||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 367 AATCTATGTGAAATCTTTTTATTTTCTTCTTCTGTTGCTTGTGACTTGTGGCTGAGTGTA 426
Query 420 T-GGAACTATAGAAGATACAACACACTTGTGAGTGAATAAATATGCACTCGGGCTTTGTC 478
| ||||||||||| |||||||||||||| |||||||||||||||||||| |||| || ||
Sbjct 427 TTGGAACTATAGATGATACAACACACTTTTGAGTGAATAAATATGCACTGGGGCATTATC 486
Query 479 GGGTCTGATAAAGCACGAGTCGAT 502
|||||||||||||| ||| ||||
Sbjct 487 TGGTCTGATAAAGCAGGAGCCGAT 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23961688119
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5