BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475731
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1639 0.0
> AT1G66260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:24695640-24698434 REVERSE LENGTH=1310
Length=1310
Score = 1639 bits (887), Expect = 0.0
Identities = 1120/1226 (91%), Gaps = 41/1226 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaTCCCCAAAAGCTTCCTCAAAAACCCTAATCGCCGATCTCTCGATCTTCTCCGA 60
|||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||
Sbjct 62 AAAAAAATCCCCAAAAGCTTCCTC-AAAACCCTAA-CACAGATCTCTCGATCTTCTCCGA 119
Query 61 TCTGCCTTGTTTC-CCTAATCTGGTAAAGTAGTTTGATTTTATTGGATTGAAGATGTCAG 119
|||| | | |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 TCTGTC-T-TTTCTCCTAATCTGGT---TTAGTTTGATTTTATTGGATTGAAGATGTCAG 174
Query 120 ACGCTTTGAATATGACTCTTGATGAAATTGTCAAGAAGAGTAAGTCTGCAAGGTCTGCAG 179
||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 175 ACGCTTTGAATATGACTCTTGATGAAATTGTGAAGAAGAGTAAGAGTGAAAGGTCTGCAG 234
Query 180 CTGCAAGATCTGGAGGTAAAGGAGTTTCGCGCC-G--TGGACGTGGACGTGGTGGACCTA 236
||||||| |||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 235 CTGCAAGGTCTGGAGGTAAAGGAGTTTCCCGTAAGAGTGGACGTGGACGTGGTGGACCTA 294
Query 237 ATGGTGTTGTAGGAGCTGGAAGAGGAGGTGGACCTGTTCGTAGAGGTCCTCTTGCTGTTA 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATGGTGTTGTAGGAGGTGGAAGAGGAGGTGGACCTGTTCGTAGAGGTCCTCTTGCTGTTA 354
Query 297 ATGCTCGGCCATCTTCCTCCTTCTCGATAAACAAGCTTGCCCGCAGGAAGAGGAGCTTGC 356
|| |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 355 ATACTCGGCCATCATCATCCTTCTCCATAAACAAGCTTGCCCGCAGGAAGAGGAGCTTGC 414
Query 357 CATGGCAGAATCAGAATGATTTGCT-TGAAGAAAGCCTGAGAGCTGTTGGGGTATCTGGA 415
||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||| |||
Sbjct 415 CATGGCAGAATCAGAATGATTTG-TATGAAGAAACCCTTAGAGCTGTTGGGGTATCAGGA 473
Query 416 GTGGAAGTCGGAACCACAGTTTATATTACCAACCTTGATCAGGGAGTGACAAACGAAGAT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 474 GTGGAAGTCGGAACCACAGTTTATATTACCAACCTTGATCAGGGAGTGACAAATGAAGAT 533
Query 476 ATAAGGGAACTCTATGCTGAGATTGGAGAGCTGAAAAGATATGCAATTCACTATGACAAA 535
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATAAGGGAACTCTATGCTGAAATTGGAGAGCTGAAAAGATATGCAATTCACTATGACAAA 593
Query 536 AATGGGCGTCCAAGTGGCTCTGCTGAAGTTGTGTATATGAGAAGAAGTGATGCA-TTACA 594
||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||
Sbjct 594 AATGGGCGTCCAAGTGGATCGGCTGAAGTTGTGTATATGAGAAGAAGTGATGCAATT-CA 652
Query 595 AGCTATGAGGAAATACAACAATGTACTCTTGGATGGAAGGCCTATGAGACTAGAGATTCT 654
|||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 653 AGCTATGAGGAAATACAATAATGTACTTTTGGATGGAAGGCCTATGAAACTGGAGATTCT 712
Query 655 AGGCGGAAGTGCTGAGGCTGCTCCTGTCGCAGCTCGTGTTAATGTGACTGGATTGAATGG 714
|| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GGGTGGAAATACTGAATCTGCTCCTGTCGCAGCTCGTGTTAATGTGACTGGATTGAATGG 772
Query 715 AAGGATGAAGAGGAGTGTTTTCATTGGACAAGGCA-TTAGAGGTGGGAGAGTAGGAAGAG 773
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 773 AAGGATGAAGAGGAGTGTCTTCATTGGACAAGG-AGTTAGAGGTGGGAGAGTAGGAAGAG 831
Query 774 GAAGAGGTTCAGGTCCTTCTGGTAGACACCTTCCAATCCAACAAAACCAACAAGGAGTTG 833
|||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| | ||
Sbjct 832 GAAGAGGTTCAGGTCCTTCTGGGAGACGCCTTCCACTCCAACAAAACCAACAAGGTGGTG 891
Query 834 TGAGAGGTGGTCGAGGCGGGTTCCCTGGTAGAGGCCGAGGTAATGGTGGTGGCAGAGGGA 893
||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 892 TGACAGCTGGTCGAGGCGGGTTCCGTGGTAGAGGCCGGGGTAATGGTGGTGGCAGAGGGA 951
Query 894 ATAAAAGCGGC---CGAGGCGGAAAGAAGCCGGTGGAGAAGTCTGCTGCAGACCTGGACA 950
|||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||
Sbjct 952 ATAAAAGCGGTGGGCGAGGTGGAAAGAAGCCAGTGGAGAAGTCTGCTGCGGATCTCGACA 1011
Query 951 AAGATCTCGAAAGCTATCATGCTGAAGCTATGAACATCTCTTAAGCAGAAACAAGACTAC 1010
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1012 AAGATCTCGAAAGCTATCATGCTGAAGCTATGAACATCTCTTAAACAGAAGCAAGACTTC 1071
Query 1011 GCTTCTTGTCATGTACTCTTGTGTTCTTTTATTCTTAGTCTCTGACTAAAT--GTGCCAA 1068
|| |||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 1072 GCATCTTGTCATGTACTTTTGTGTTCTTT-ATTCTTAGTCTCTGACTAAATATGTGGCAA 1130
Query 1069 AGTCTCTGGTTTGGTTTGATTTCGTTTAGGGTGGCTCTACTTTGCTTTTGTTTTCCTCTT 1128
||||| |||||||||| ||| |||||||| |||||||||| ||||||| ||||||||||
Sbjct 1131 AGTCT--GGTTTGGTTTAATTACGTTTAGGATGGCTCTACTCTGCTTTTATTTTCCTCTT 1188
Query 1129 TTGTTG---C----TT-CAC--T---TT--GGTTATTGAAGTTTAAAGAGATTTAGTTTG 1173
|| ||| | || ||| | || ||||||||||||| |||||||||||| | |
Sbjct 1189 TTCTTGTTTCACACTTTCACAGTCACTTTTGGTTATTGAAGTTAAAAGAGATTTAGCT-G 1247
Query 1174 TAAATGAGAAAGCTTTTATTGTTAGT 1199
|||||||||||||| |||||||||||
Sbjct 1248 TAAATGAGAAAGCTGTTATTGTTAGT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5