BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475736
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66330.1 | Symbols: | senescence-associated family protein ... 2259 0.0
> AT1G66330.1 | Symbols: | senescence-associated family protein
| chr1:24729629-24732360 REVERSE LENGTH=1610
Length=1610
Score = 2259 bits (1223), Expect = 0.0
Identities = 1357/1422 (95%), Gaps = 7/1422 (0%)
Strand=Plus/Plus
Query 110 TCAAGGTTTATCTCAATGGCTCTTAACGTGAGCAAGATTGTTCCTAAGAGTCCAATTTTA 169
|||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 92 TCAA-GTTTATCTCAATGGCTCTTAACGTGAGCAAGGTTGTTCCCAATAGTCCAATTTTA 150
Query 170 GCCAAGAGTGTTAATGCATCAAGATCTCAAAGAGTTTTGTTGGCGTTTGTTCATCATCCT 229
| |||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 151 GTTAAGAGTGTTAATGCTTCAAGATCTCGAAGAGTTCTGTTGGCGTATGTTCATCATCCT 210
Query 230 CTAGCTGCTAAAAAGGGTTCATCTGTTGAAGAGTTAAAACAAGGTCTTTGTTGTATAAAG 289
|||||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 211 TTAGCTGCTAATAAGGGTTCATCTATTGAAGAGTTAAAGCAAGGTCTTTGTTGTACAAAG 270
Query 290 ACTGTCACTTTTGTTAGTTCTCGAAGATCTTCAACATTGTGCTTTGTTGGAAAATCTCAA 349
||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct 271 ACTGTCACTTTTGTTAGTTCTCGGAGATGTTCTACATTGTGCTTTGTTGGAAAGTCTCAA 330
Query 350 GACACTGAAACTAGTTCTCAAGTTGTACAAAAAGAAGGTGAGAAGCAAGTGATGCCGAGG 409
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GACACTGAAACTAATTCCCAAGTTGTACAAAAAGAAGGTGAGAAGCAAGTGATGCCGAGG 390
Query 410 AGG-AAA--AGTAACTCAAGCCAAGTTTTGGTTGAATATGTGTCTAATGATGCTAAGTTT 466
||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 391 AGGAAAAGTAGTAACTCAAGCCAACTTTTGGTGGAATATGTGTCTAATGATGCTAAGTTT 450
Query 467 GTGAATGAAAGGGCTCGTAATGACCTTGTTCTTCTATCTCGAGGTATTATGAGACTTGAT 526
||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 451 GTGAATGAAAGAGCTCGTAATGACTTTGTTCTTCTATCTCGTGGTATTATGAGACTTGAT 510
Query 527 GCTCGTGCTCGCCAGGATGTTGCCATTCTTGGGTCTGGGTTCCTTAAACTTGATGCTCGG 586
|||||||| || |||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 511 GCTCGTGCACGACAGGATGTTGCCATTCTTGGTTCCGGGTTCCTTAAACTCGATGCTCGG 570
Query 587 GCAAGAGAAGATACAGAGAAAATAGATCGTGATGTCAAAAGAAAGGCTGAGCGCCTTCAT 646
|||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 571 GCAAGAGAAGATACAGAGAAAATAGACCGTGATGTCAAGAGAAAAGCCGAGCGCCTTCAT 630
Query 647 CATATTGCTACTATATTAAAAAACATAGCGGAGTCTAAGTTGAAAAATGCCGCTGATAAG 706
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 631 CATATTGCTACTATATTTAAAAACATAGCTGAGTCTAAGTTGAAAAATGCCGCTGATAAG 690
Query 707 CATTGGAGTGATGGCGCTTTAGAGGCTGATTTAAGGCGAGCAGATTTCCGTGCTAAACAA 766
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CATTGGAGCGATGGCGCTTTAGAGGCTGATTTAAGGCGAGCAGATTTCCGTGCTAAACAA 750
Query 767 CGGGCCATGGAAGACGCGTTAATGGCTTTAGAGTTCATTAAGAACATCCACAACATGATG 826
||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 751 CGGGCCATGGAAGACGCATTAATGGCTTTAGAGTTTATTAAGAACATCCACGACATGATG 810
Query 827 GTGAACAAAATGGTTGACAGCTTGGCAACATCTGAAACTGGTACCACGGATCGCATATCG 886
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 811 GTGAACAAAATGGTTGACAGCTTGGTGACATCTGAAACTGGTACCACGGATCGCATATCG 870
Query 887 CTTGAGAAGAATGGAATAGCTCTCGGGTTTTTCCCTGGGGAAGTTTCATCTGATCGCATA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CTTGAGAAGAATGGAATAGCTCTCGGGTTTTTCCCTGGGGAAGTTTCATCTGATCGCATA 930
Query 947 TCTGCTATTGAGGAAGCTTACAAGAGTATGGCATCAGCACTCTCAGAAGCCGATGGAATT 1006
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 931 TCTGCTATTGAGGAAGCTTACAAGAGTATGGCATCAGCGCTCTCAGAAGCCGATGGAATT 990
Query 1007 GACTACACTGACCCCGAAGAACTCGAGTTGTTAGTCACGACTCTGATTGACCTTGATGCA 1066
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GACTACACTGACCCTGAAGAACTCGAGTTGTTAGTCACGACTCTGATTGACCTTGATGCA 1050
Query 1067 ATGGATGGTAAAAGTAGTGCATCTCTCTTGGCTGAATGCTCAAGCTCTCCAGATGTCAAT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 ATGGATGGTAAAAGTAGTGCATCTCTCTTGGCTGAATGCTCAAGCTCTCCAGATGTCAAT 1110
Query 1127 ACAAGAAAAGCGTTGGCTAATGCCTTAGCAGCTGCACCATCAATGTGGACACTAGGAAAT 1186
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1111 ACAAGAAAAGCGTTGGCTAATGCTTTAGCAGCGGCACCATCAATGTGGACACTAGGAAAT 1170
Query 1187 GCAGGCATGGGAGCATTACAGAGACTCGCTGAAGACAGTAACCCGGCGATTGCAGCAGCT 1246
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GCAGGAATGGGAGCATTACAGAGACTCGCTGAAGACAGTAACCCGGCGATTGCAGCAGCT 1230
Query 1247 GCTTCGAGAGCGATCAGTGCGCTGAAGAAGCAATGGGAGGTAGAGGAAGGAGACTCACTT 1306
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1231 GCTTCGAGAGCGATCAATGCGCTGAAGAAGCAATGGGAAGTAGAGGAAGGAGACTCACTG 1290
Query 1307 AGGTTTATGATGAACTTCGAGACGCCGAATGATGATGATGATGGAGAGAGTGACCTTGAT 1366
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 1291 AGGTTTATGATGAACTTCGAGAGGCCGAATGATGATGATGATGTAGACAGTGACCTTGAT 1350
Query 1367 GAGATCTGAAAATGATTTTT-CATGTAAACGAAGATGATGTTTGTAGATAATTTTCAGTG 1425
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1351 GAGATCTGAAAATGATTTTTTCATGTAAACGAAGATGAAGTTTGTAGATAATTTTCAGTG 1410
Query 1426 AACTTTAGTGTTACAGAGATGATAGTAGGTGACTTCGTTGGGGTCATGTAATTAATTAAA 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 AACTTTAGTGTTACAGAGATGATAGTAGGTGACTTCGTTGGGGTCATGTAATTAATTAAA 1470
Query 1486 AGAGGCCGATTTGGTATTTTGTTGTTGGGatat--atatata 1525
| ||||||||| |||||||||||||| ||||| |||||||
Sbjct 1471 ACTGGCCGATTTAGTATTTTGTTGTTGAGATATTCATATATA 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5