BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475772
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66750.1 | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4... 1670 0.0
> AT1G66750.1 | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4
| CDK-activating kinase 4 | chr1:24894715-24897253 FORWARD
LENGTH=1345
Length=1345
Score = 1670 bits (904), Expect = 0.0
Identities = 1017/1073 (95%), Gaps = 2/1073 (0%)
Strand=Plus/Plus
Query 1 AATCAAAACCCAATGTCGAAATCCAACGAAAACCAACCAGTGGATCGATATCTCCGCCGT 60
|||| ||||||||||||||||||| ||| || |||||||| ||| |||| |||||||||
Sbjct 49 AATCTAAACCCAATGTCGAAATCCGGCGATAATCAACCAGTTGATAGATACCTCCGCCGT 108
Query 61 CAAATCCTCGGAGAAGGAACATACGGTGTCGTTTACAAAGCCACAGACACAAAGACTGGA 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 109 CAAATCCTCGGAGAAGGAACATACGGTGTCGTTTACAAAGCCACCGACACAAAGACTGGG 168
Query 121 AAAACTGTAGCAGTGAAGAAGATAAGATTAGGAAACGAAAAGGAAGGCA-TAAATTTCAC 179
|||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 169 AAAACTGTAGCAGTGAAGAAGATAAGATTAGGAAACCAAAAGGAAGG-AGTAAATTTCAC 227
Query 180 AGCTTTGAGAGAGATAAAGCTATTAAAAGAGCTGAATCATCCACACATTGTTGAACTCAT 239
|||||| ||||| || |||||| |||||||||||||||||||||| || |||||||||||
Sbjct 228 AGCTTTAAGAGAAATCAAGCTACTAAAAGAGCTGAATCATCCACATATCGTTGAACTCAT 287
Query 240 TGATGCTTTTCCTCACAATGGAAGTTTGCATTTAGTTTTTGAGTATATGCAAACGGATTT 299
||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 288 TGATGCTTTCCCTCACGATGGAAGTTTGCATCTAGTTTTTGAGTATATGCAAACAGATTT 347
Query 300 AGAAGCAGTGATTCGTGATCGTAATATCTTTTTATCTCCTGGTGATATTAAGTCTTATAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AGAAGCAGTGATTCGTGATCGTAATATCTTTTTATCTCCTGGTGATATTAAGTCTTATAT 407
Query 360 GTTGATGACTTTGAAGGGTTTAGGTTATTGTCATAAGAAATGGGTTCTTCACAGGGATAT 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 408 GTTGATGACTTTGAAGGGTTTAGCTTATTGTCATAAGAAATGGGTTCTTCACAGGGATAT 467
Query 420 GAAGCCAAATAATTTGTTGATTGGAGAGAATGGTTTGTTGAAGTTGGCTGATTTTGGTTT 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GAAGCCGAATAATTTGTTGATTGGAGAGAATGGTTTGTTGAAGTTGGCTGATTTTGGTTT 527
Query 480 GGCGAGGTTGTTTGGGAGTCCGAATCGGAGGTTTACTCATCAGGTATTTGCTACATGGTA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GGCGAGGTTGTTTGGGAGTCCGAATCGGAGGTTTACTCATCAGGTATTTGCTACATGGTA 587
Query 540 CAGAGCGCCTGAGTTGTTATTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGC 599
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CAGAGCGCCTGAGTTACTGTTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGC 647
Query 600 TGCAGGTTGTATCTTTGCTGAGCTATTACTTCGTCGACCATTTCTACCGGGTTCTACTGA 659
|||||| ||||| ||||||||| || |||||||| |||||||||| ||||||||||||||
Sbjct 648 TGCAGGCTGTATTTTTGCTGAGTTACTACTTCGTAGACCATTTCTTCCGGGTTCTACTGA 707
Query 660 GATTGATCAACTTGGAAAGATCTTTCAGGCTTTTGGAACTCCAGTACCTTCGCAATGGTC 719
||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 708 GATTGATCAACTTGGAAAGATCTTTCAAGCGTTTGGTACTCCAGTACCTTCCCAATGGTC 767
Query 720 TGATATGATCTATCTCCCAGACTACTTGGAGTTCTCTTATACACCTGCTCCACCATTACG 779
||| ||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||
Sbjct 768 TGACATGATCTATCTCCCAGACTACATGGAATTCTCCTATACACCCGCTCCACCATTACG 827
Query 780 TACCATTTTCCCTATGGCAAGCGATGACGCTTTGGATCTTCTAGCAAAAATGTTCATCTA 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 828 TACCATTTTCCCTATGGCAAGTGATGACGCTTTGGATCTTCTAGCAAAAATGTTCATCTA 887
Query 840 CGACCCACGACAAAGGATCACAATACAGCAAGCTTTAGACCACAGGTATTTCTCGTCTTC 899
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 888 CGACCCACGTCAAAGGATCACAATACAACAAGCTTTAGACCACAGGTATTTCTCGTCTTC 947
Query 900 TCCATCACCAACTGAGCCAGGGAAGCTTCAGATTCCGGCTTCAAAAGGAGACGCACTCGA 959
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 948 TCCATCACCAACTGAGCCAGGGAAGCTTCAGATTCCAGCTTCCAAAGGAGACGCACTCGA 1007
Query 960 ACCAAAGGCCTCCGAGCAAAACCAACACGCAAATAGCCCGGCCGTACTGTCACCTCCTGG 1019
||||||||||||||||||||||||||| | ||||||||| || |||||||| ||||||||
Sbjct 1008 ACCAAAGGCCTCCGAGCAAAACCAACATGGAAATAGCCCAGCGGTACTGTCTCCTCCTGG 1067
Query 1020 TAAAATGAGGAGAGTAATGGGTCCTGAGGGATTCACTTGAGAAGATAATGTTT 1072
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 1068 TAAAATGAGGAGAGTGATGGGTCCTGAAGGATTCACTTGAGAAGATGATGTTT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5