BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475774
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66760.2 | Symbols: | MATE efflux family protein | chr1:249... 2540 0.0
> AT1G66760.2 | Symbols: | MATE efflux family protein | chr1:24901978-24904443
FORWARD LENGTH=1811
Length=1811
Score = 2540 bits (1375), Expect = 0.0
Identities = 1538/1618 (95%), Gaps = 6/1618 (0%)
Strand=Plus/Plus
Query 36 TTATATCAAAATCATAAAGCTAAATAAATACGACACAACTTCCCACATTTTCTCTCTCCA 95
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 59 TTATATCAAAATCATAAAGCTAAATAAATACGACACAACTTCCAACATTTTCTCTAACCA 118
Query 96 GAAAG--aaaaaaaaTGAAGAAGAGTATCGAAACTCCATTACTGTTGAACACCAAACAAT 153
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 119 GAAAGAAAAAAAAAATGAAGAAGAGTATCGAAACTCCGTTATTGTTGAACACCAAACAAT 178
Query 154 CACAAGAAGAAGAGAACGAAAAGCTAAGATGGGAGAAGATAAAGAAAGTTGCTTCAATGG 213
||||||| ||||| || ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 179 CACAAGACGAAGATAAAGAAAAAATAAGATGGGAGAAGATGAAGAAAGTTGCTTCAATGG 238
Query 214 CTGCTCCAATGGTCGCTGTGAACATGTCTCAGTTCCTTCTTCAAGCAACTTCAACAATGA 273
|||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||
Sbjct 239 CTGCTCCAATGGTCGCCGTGAACATGTCTCAATACCTTCTTCAAGCAACTTCTACAATGA 298
Query 274 TCGTCGGTCACCGGAGTGAACTCGCTCTCGCCGGAATAGCTCTCGGAAGCTCCTTTGCTA 333
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 299 TCGTCGGTCACCGGAGCGAACTCGCTCTCGCCGGAATCGCTCTAGGAAGCTCCTTTGCTA 358
Query 334 ATGTTACCGGCTTTGGTGTTCTTTTTGGACTTTCAGGTTCATTAGAAACTTTATGTGGTC 393
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 359 ATGTTACCGGCTTTGGTGTTCTTTTTGGACTTTCAGGTTCATTGGAAACACTATGTGGTC 418
Query 394 AAGCATATGGAGCAAAACAATATCACAAGCTTGGTTCTTACACTTTCACTTCAATAGTTT 453
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 AAGCATATGGAGCAAAACAATATCACAAGCTTGGATCTTACACTTTCACTTCAATAGTTT 478
Query 454 TCCTCTTGATTATCTCTGTCCCGATTTCAATTCTTTGGATGTTCATGAACCAGATCTTGC 513
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 479 TCCTTTTGATTATCTCTGTTCCGATTTCGATTCTTTGGATGTTCATGAACCAGATCTTGC 538
Query 514 TTTTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTTG 573
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TGTTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTGG 598
Query 574 TACCGGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAA 633
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TACCAGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAA 658
Query 634 GCTTGATCTATCCAATGGTCTTGAGCTCTTTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 693
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 GCTTGATTTATCCAATGGTCTTGAGCTCTCTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 718
Query 694 GTTGGCTAATGGTTCATAAATTTGATTTTGGAGCCAAAGGAGCGGCTGTGTCTATCGGTA 753
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 GTTGGCTAATGGTTCATAAATTTGATTTTGGAGCCAAAGGAGCGGCTGCGTCTATCGGTA 778
Query 754 TCTCTTACTGGCTCACCGCGGCTTTCCTTTGGGTTTATATGAAACGCTCTAGCCGTTGTG 813
||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 779 TCTCTTACTGGCTCAACGCGGTTTTTCTTTGGGTTTATATGAAACGCTCTAGTCGTTGTG 838
Query 814 CCGAAACGCGGATTTATATGTCGAAAGATGTGTTTGTTCATACAAATATCTTCTTTCAAT 873
||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 839 TCGAAACGCGGATTTATATGTCCAAGGATGTTTTTGTTCATACAAATATCTTCTTTCAAT 898
Query 874 TTGCGGTTCCTTCTGCAATGATGTGTTGCCTTGAGTGGTTAGCTTTCGAGGTGATTACTT 933
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 TTGCCATTCCTTCTGCAATGATGTGTTGCCTTGAGTGGTTAGCTTTCGAGGTCATTACTT 958
Query 934 TGCTGTCTGGTCTTCTACCCAACTCAAAGCTCGAAACTTCGGTTATTTCGATTTGCCTCA 993
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 TGCTGTCTGGTCTTCTACCCAACTCAAAGCTCGAAACATCGGTTATTTCGATTTGCCTCA 1018
Query 994 CAACCTCTTCATTGCACTACAATCTGGTAAATGGAATCGGTGATGCAGCAAGTACCAATG 1053
| |||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1019 CGACCTCTTCATTGCATTACAATCTAGTAAATGGAATTGGTGATGCAGCAAGCACCAATG 1078
Query 1054 TGGCAAATGAGCTAGGAGCTGGGAATCCGCGAGGGGCGCGTGATTCTGCTGCGGCTGCAA 1113
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 TGGCTAATGAGCTAGGAGCTGGGAATCCGCGAGGGGCTCGTGATTCTGCTGCGGCTGCAA 1138
Query 1114 TCATAATTGCAGCTGTTGAGTCAGTTGTTGTGAGCTCTAGTCTCTTCTTGTCTCGCAGTG 1173
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1139 TCATAATTGCAGCTGTTGAGTCAGTTATTGTGAGCTCTAGTCTGTTCTTGTCTCGCAGTG 1198
Query 1174 TGTGGCCTTATGCATATAGCAATGTGGAGGAAGTAATTAGTTATGTGACTGATATCACTC 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTGGCCTTATGCATATAGCAATGTGGAGGAAGTAATTAGTTATGTGACTGATATCACTC 1258
Query 1234 CCATTCTTTGTATCTCAATCCTCATGGACAGTTTCTTGACCGTCCTTTCCGGGGTTGTGA 1293
| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 1259 CTATTCTTTGTATCTCAATCCTCATGGACAGCTTCTTGACCGTCCTCTCCGGGATTGTGA 1318
Query 1294 GAGGAACCGGGTGGCAGAAAATTGGAGCCTATGTAAACATAACCTCTTATTATCTCATTG 1353
||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 1319 GAGGAACAGGGTGGCAAAAAATTGGAGCTTATGTGAACATAACCTCTTATTATGTCATTG 1378
Query 1354 GTATTCCCGTTGGACTTCTATTGTGTTTTCATCTCCACTTCAATGGGAAAGGACTTTGGG 1413
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 GTATTCCTGTTGGACTTCTATTGTGTTTTCATCTTCACTTCAATGGGAAAGGACTTTGGG 1438
Query 1414 CTGGTTTAGTCACAGGATCAACACTACAAACTCTAATCCTCTTTCTTGTTATTGGATTTA 1473
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1439 CTGGTTTAGTCACAGGATCAACATTACAAACTCTAATCCTATTTCTTGTTATTGGATTTA 1498
Query 1474 CCAATTGGAGGAAAGAGGCAATCAAGGCTAGGGAGAGAATAGGTGATGAGAAGGTTTGGA 1533
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1499 CCAATTGGAGCAAAGAGGCAATTAAGGCTAGGGAGAGAATTGGTGATGAGAAAGTTTGGA 1558
Query 1534 GACATGACTCATTGCTTAATTGAAGaaaaaaaGAAATACAAACTTT-GGGGGATTTTGAT 1592
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1559 GACATGACTCATTGCTTAATTGAAGAAAAAAAGAAATACAAACTTTTGGGGGATTTTGAT 1618
Query 1593 TGCTT-TTTGTTTGTGAGT-TT-GTGCAAGAACCTGCAGTTGATTGTAATTGATATTG 1647
||||| ||| |||||| || || |||||| ||||| ||||||||||||||| ||||||
Sbjct 1619 TGCTTCTTTTTTTGTGTGTGTTTGTGCAATAACCTTCAGTTGATTGTAATTTATATTG 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5