BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475805 Length=993 Score E Sequences producing significant alignments: (Bits) Value AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxyla... 1591 0.0 AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 741 0.0 AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 726 0.0 AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (sm... 664 0.0 > AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048158-25049424 REVERSE LENGTH=1025 Length=1025 Score = 1591 bits (861), Expect = 0.0 Identities = 955/998 (96%), Gaps = 15/998 (2%) Strand=Plus/Plus Query 1 AACCTCACACATATCCACACTCAAAATCCAACGGTCTAGATCCTATTCCACTTGAATCTC 60 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1 AACCTCACACATATCCACACTCAAAATCCAACGGTGTAGATCCTAGTCCACTTGAATCTC 60 Query 61 ATGAATCCTAGACCCTCCGATCACTCCAAAGCTTATTCTCATTGTTATTACCATTATATA 120 ||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| Sbjct 61 ATGTATCCTAGACCCTCCGATCACTCCAAAGCTTGTTCTCATTGTTGTTATCATTATATA 120 Query 121 TAGATGACCAAAGCATTAGACCAAACCTCAGTCACACAAAGAGTAAAGAAGAACAATGGC 180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TAGATGACCAAAGCACTAGACCAAACCTCAGTCACACAAAGAGTAAAGAAGAACAATGGC 180 Query 181 TTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACAATGGTCGC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 TTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACTATGGTCGC 240 Query 241 TCCTTTCACCGGACTTAAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCCAACAACGA 300 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 241 TCCTTTCAACGGACTTAAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCTAACAACGA 300 Query 301 CATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTATGGCCTCCCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 301 CATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTGTGGCCTCCGAT 360 Query 361 TGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGATTCCGAATTGGC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGATTCCGAATTGGC 420 Query 421 TAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTGGA 480 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 421 TAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTGGA 480 Query 481 GCACGGATTTGTGTACCGTGAGCACGGTAACACCCCCGGATACTATGATGGACGGTACTG 540 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 481 GCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGACGGTACTG 540 Query 541 GACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGAAGGAAGT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGAAGGAAGT 600 Query 601 GCAAGAGTGCAAGAAGGAGTACCCTCAA-GCCTTCATTAGGATCATCGGATTCGACAACA 659 | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 601 GGAAGAGTGCAAGAAGGAGTACCC-CAATGCCTTCATTAGGATCATCGGATTCGACAACA 659 Query 660 CCCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCGGTTAAT 719 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCGGTTAAT 719 Query 720 TTCCCTTTGCTTT-GTGTAAACATCAAAACATTATCCCCCACCTTTGATTTTATCCCTTG 778 ||||||||||||| |||||||| ||||||| |||||||||| |||||||||||||||||| Sbjct 720 TTCCCTTTGCTTTTGTGTAAACCTCAAAACTTTATCCCCCATCTTTGATTTTATCCCTTG 779 Query 779 TTCTTCTGctttttttcttcttctttttttatgggttttaatttccggatttaacgtttg 838 || |||||||||||| |||||| | || ||||||||||||||||| |||||||||| Sbjct 780 TTTTTCTGCTTTTTT-CTTCTT-TCTT-----GGGTTTTAATTTCCGGACTTAACGTTTG 832 Query 839 ttttccggtttGCGAGACATTTTCTATCGGATTCTCAACTGTCTGATGAAATAAATATGT 898 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 833 TTTTCCGGTTTGCGAGACATATTCTATCGGATTCTCAACTGTCTGATGAAATAAATATGT 892 Query 899 AATGTTCTATAAGTCTTTCGATTTGA-ATTGCATATCAACAAAATGAAAG-AGGACAATG 956 ||||||||||||||||||| |||||| || |||||||||||||| |||| ||||||||| Sbjct 893 AATGTTCTATAAGTCTTTCAATTTGATAT-GCATATCAACAAAAAGAAAATAGGACAATG 951 Query 957 CGGCT-CGAAATATGAAATTTACAAGTTGAAGAACCAT 993 ||||| | |||||||||||||||||||| ||||||||| Sbjct 952 CGGCTAC-AAATATGAAATTTACAAGTTTAAGAACCAT 988 > AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15380945-15382035 REVERSE LENGTH=861 Length=861 Score = 741 bits (401), Expect = 0.0 Identities = 504/553 (91%), Gaps = 9/553 (2%) Strand=Plus/Plus Query 166 AAGAAGAA-CAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224 |||||||| |||||||||||||||| |||| ||| | || ||||| |||| ||||||| Sbjct 47 AAGAAGAAGTAATGGCTTCCTCTATGTTCTCCTCCACCGCTGTGGTTACCTCCCCGGCTC 106 Query 225 AGGCCACAATGGTCGCTCCTTTCACCGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283 | ||||| ||||||||||| |||||||| ||| ||||| |||||| | ||||| | |||| Sbjct 107 AAGCCACCATGGTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTTCTTTCCCGGTCACC 165 Query 284 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 166 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGAGGAAGAGTTAGCTGCATG 225 Query 344 CAGGTATGGCCTCCCATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403 |||| ||||| || || ||||||||||||||||||||||| |||||||| ||||||||| Sbjct 226 AAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTT 285 Query 404 ACCGA--TTCCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 461 | || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 AGTGACGTT--GAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 343 Query 462 GTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACACCCCCGGAT 521 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 344 GTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGAT 403 Query 522 ACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCG 581 ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 404 ACTATGATGGACGATACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG 463 Query 582 CTCAAGTGTTGAAGGAAGT-GCAAGAGTGCAAGAAGGAGTACCCTCAAGCCTTCATTAGG 640 ||||||||||||||||||| | |||| |||||||||||||||||| |||||||||||| Sbjct 464 CTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCTGGCGCCTTCATTAGG 522 Query 641 ATCATCGGATTCGACAACACCCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCA 700 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 523 ATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCC 582 Query 701 CCAAGCTTCACCG 713 ||||||||||||| Sbjct 583 CCAAGCTTCACCG 595 > AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15384117-15385247 REVERSE LENGTH=808 Length=808 Score = 726 bits (393), Expect = 0.0 Identities = 499/550 (91%), Gaps = 7/550 (1%) Strand=Plus/Plus Query 166 AAGAAGAA-CAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224 |||||||| ||||||||||||||||||||| || || || ||||| |||| ||||||| Sbjct 19 AAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCGGCTC 78 Query 225 AGGCCACAATGGTCGCTCCTTTCACCGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283 | ||||| ||||||||||| ||||| || || ||||| |||||| | ||||| | |||| Sbjct 79 AAGCCACCATGGTCGCTCCATTCACTGG-TTTGAAGTCATCCGCTTCTTTCCCGGTCACC 137 Query 284 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343 |||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| Sbjct 138 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCTGCATG 197 Query 344 CAGGTATGGCCTCCCATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403 |||| ||||| || || ||||||||||||||||||||||| |||||||| ||||||||| Sbjct 198 AAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTT 257 Query 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 462 || || | ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 258 ACTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTCCTTG 316 Query 463 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACACCCCCGGATA 522 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 317 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATA 376 Query 523 CTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGC 582 ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 377 CTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGC 436 Query 583 TCAAGTGTTGAAGGAAGT-GCAAGAGTGCAAGAAGGAGTACCCTCAAGCCTTCATTAGGA 641 |||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||| Sbjct 437 TCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGA 495 Query 642 TCATCGGATTCGACAACACCCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCAC 701 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 496 TCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCC 555 Query 702 CAAGCTTCAC 711 |||||||||| Sbjct 556 CAAGCTTCAC 565 > AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377173-15378416 REVERSE LENGTH=999 Length=999 Score = 664 bits (359), Expect = 0.0 Identities = 510/579 (88%), Gaps = 25/579 (4%) Strand=Plus/Plus Query 166 AAGAAG-AACAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224 |||||| | ||||||||||||||||||||| ||||| || ||||| | || ||||||| Sbjct 100 AAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGTTACATCCCCGGCTC 159 Query 225 AGGCCACAATGGTCGCTCCTTTCACCGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283 ||||||| ||||||||||| |||||||| ||| ||||| |||||||| ||||| | |||| Sbjct 160 AGGCCACCATGGTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCATTCCCGGTCACC 218 Query 284 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343 |||||| ||||||| ||||| ||||||||| |||||||||| |||||||||| ||||||| Sbjct 219 CGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATG 278 Query 344 CAGGTATGGCCTCCCATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403 |||| ||||| || |||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 279 AAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTT 338 Query 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 462 | || | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339 AGTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 397 Query 463 TGTTGAATTCGAGTTGGAG--------CAC-------GGATTTGTGTACCGTGAGCACGG 507 ||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 398 TGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGGATTTGTGTACCGTGAGCACGG 457 Query 508 TAACACCCCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGG 567 ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 458 AAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGG 517 Query 568 TTGCACCGACTCCGCTCAAGTGTTGAAGGAAGT-GCAAGAGTGCAAGAAGGAGTACCCTC 626 |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 518 ATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGG 576 Query 627 AAGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTGCAGTGCATCAGTTTCA 686 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 577 GCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCA 636 Query 687 TTGCCTACAAGCCACCAAGCTTCACCG--G-TTAATTTC 722 ||||||||||||| ||||||||||||| | |||||||| Sbjct 637 TTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTC 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48626654296 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5