BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475826
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67300.2 | Symbols: | Major facilitator superfamily protein... 2562 0.0
> AT1G67300.2 | Symbols: | Major facilitator superfamily protein
| chr1:25193704-25196931 REVERSE LENGTH=1793
Length=1793
Score = 2562 bits (1387), Expect = 0.0
Identities = 1525/1591 (96%), Gaps = 11/1591 (1%)
Strand=Plus/Plus
Query 158 TGAAATCAAGCGATCTAGAAGAATCTGGCAAAATCTTAGGTGACGAATGTTGGGACTGCA 217
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 135 TGAAATCAAGCGATCTAGAAGAATCTGGCAAAATCTTAGCTGACGAATGTTGGGATTGCA 194
Query 218 ACGAGAAACATCCTCGATGTACAAGAGAACGTCATCGAGAGATTATTCTCCGATGGTCGA 277
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 195 ACGAGAAACATCCTCGATGTATAAGAGAACGTCATCGAGAGATTATTCTCCGATGATCGA 254
Query 278 CGTCGAAGATAGCTCAGGTCTTCTTTTAGAGAATGAAGTGAATAAGGAAATGGAGACTAC 337
||||||||| |||||||| ||||||||||||||| ||| | || |||||||| |||||
Sbjct 255 CGTCGAAGACAGCTCAGG---TCTTTTAGAGAATGATGTGGACAATGAAATGGAAACTAC 311
Query 338 AAATCCTTCATGGAAGTGTTCTCTTCCACATGTTCTAGTGGCTACGATTTCGTCGTTTCT 397
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 312 AAATCCTTCATGGAAGTGTTCTCTTCCGCATGTTCTAGTGGCTACAATTTCGTCGTTTCT 371
Query 398 ATTCGGTTACCATTTAGGAGTTGTTAATGAACCACTTGAAAGCATTTCGTCTGATCTTGG 457
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 372 ATTTGGTTACCATTTAGGAGTTGTTAATGAACCTCTTGAAAGCATTTCGTCTGATCTTGG 431
Query 458 TTTTAGTGGTGATACATTAGCTGAAGGTTTGGTGGTTAGTGTATGTCTTGGTGGCGCCTT 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 432 TTTTAGTGGTGATACATTAGCTGAAGGTTTGGTGGTTAGTGTATGTCTTGGTGGTGCATT 491
Query 518 TATCGGATCTTTATTCAGTGGAGGAGTTGCTGATGGGTTTGGAAGGCGGAGAGCTTTTCA 577
| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 492 TCTCGGATCTTTATTCAGTGGGGGAGTTGCTGATGGGTTTGGAAGACGGAGAGCTTTTCA 551
Query 578 GCTTTGTGCTTTGCCTATGATTTTGGGTGCTTTTGTCAGTGGACTTAGCAACAGTTTAGC 637
| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 552 GATTTGTGCTTTGCCTATGATTTTGGGTGCTTTTGTGAGTGGAGTTAGCAACAGCTTAGC 611
Query 638 TGTCATGCTTTTGGGAAGATTCTTGGTTGGGACTGGCATGGGTCTTGGGCCACCTGTGGC 697
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 612 TGTAATGCTTTTGGGAAGATTCTTGGTTGGGACTGGCATGGGTCTTGGACCACCTGTGGC 671
Query 698 AGCACTCTATGTGACAGAGGTATCACCAGCTTTTGTTAGGGGAACATATGGAAGCTTCAT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGCACTCTATGTGACAGAGGTATCACCAGCTTTTGTTAGGGGAACATATGGAAGCTTCAT 731
Query 758 ACAGATAGCTACATGTCTGGGACTGATGGCAGCCCTGTTTATAGGGATCCCAGTCCATAA 817
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 732 ACAGATAGCTACATGTCTGGGACTGATGGCAGCTCTGTTTATAGGGATCCCAGTCCATAA 791
Query 818 CATCACTGGTTGGTGGCGTGTGTGTTTCTGGCTATCAACGATACCTGCTGCACTACTCGC 877
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 792 CATCACGGGTTGGTGGCGTGTCTGTTTCTGGCTTTCAACGATACCTGCTGCACTACTCGC 851
Query 878 TCTGGGAATGTTCCTATGTGCTGAGTCTCCACAGTGGCTATTCAAGCAAGGGAAGATAGC 937
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TCTGGGAATGTTCCTCTGTGCTGAGTCTCCACAGTGGCTATTCAAGCAAGGGAAGATAGC 911
Query 938 TGAAGCAGAAGCCGAGTTTGAGAGGCTGCTCGGAGAGTCTCATGTGAAAACAGCAATGGC 997
|||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 912 TGAAGCAGAAGCTGAGTTTGAGAGGCTGCTTGGAGGGTCTCATGTGAAAACAGCAATGGC 971
Query 998 AGAATTATACAAACTAGATCTAGACAAGACGGATGAACCAGATGTTGTGAGCCTCTCGGA 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 972 AGAATTATACAAACTAGATCTAGACAAGACGGATGAACCAGATGTTGTGAGCCTCTCTGA 1031
Query 1058 ACTGTTATATGGTCGGCATTCAAGAGTTGTTTTTATTGGATCAACCCTGTTTGCTTTGCA 1117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GCTGTTATATGGTCGGCATTCAAGAGTTGTTTTTATTGGATCAACCCTGTTTGCTTTGCA 1091
Query 1118 ACAGCTATCTGGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTTTTCAAAAGTGCCGG 1177
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1092 ACAGCTATCTGGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTATTCAAAAGTGCTGG 1151
Query 1178 AGTACCATCGGACCTAGGCAACATATTTGTTGGAGTTTCAAACCTCTTGGGATCTGTAAT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AGTACCATCGGACCTAGGCAACATATTTGTTGGAGTTTCAAACCTCTTGGGATCTGTAAT 1211
Query 1238 CGCGATGGTGTTGATGGATAAAGTAGGAAGAAAGCTTCTTCTCCTTTGGAGTTTTATTGG 1297
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1212 CGCGATGGTGTTGATGGATAAAGTAGGAAGAAAGCTTCTTCTGCTTTGGAGTTTTATTGG 1271
Query 1298 CATGGCA-GT--AGCAATGGCACTTCAAGTTGGTGCAACAAGTTCATACTTACCACATTT 1354
||||| | || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1272 CATGGTATGTTCAGCAATGGCACTTCAAGTTGGTGCTACAAGTTCATACTTACCACATTT 1331
Query 1355 TTCGGCGTTGTGTTTATCTGTCGGTGGCACTCTCGCGTTTGTGCTAACATTCGCCTTAGG 1414
||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1332 TTCGGCGTTGTGTTTGTCTGTCGGTGGCACTCTTGTGTTTGTGCTAACATTCGCCTTAGG 1391
Query 1415 AGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAAATCTTCCCAAGTCGAATTAGAGCAAA 1474
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1392 AGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAGATCTTCCCAAGTCGAATCAGAGCAAA 1451
Query 1475 AGCTATGGCTTTTTGCATGTCGGTGCATTGGGTGATAAACTTCTTTGTGGGTTTACTCTT 1534
||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1452 AGCGATGGCTTTCTGCATGTCTGTGCATTGGGTGATAAATTTCTTTGTGGGTTTACTCTT 1511
Query 1535 TCTGAGATTGCTTGAGCAGCTTGGTCCTCGGCTACTATATTCGATGTTTTCTACGTTCTG 1594
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TCTGAGATTGCTTGAGAAGCTTGGTCCTCGGCTACTATATTCGATGTTTTCTACGTTCTG 1571
Query 1595 TTTAATGGCGGTGATGTTCGTGAAGCGGAACGTGATTGAAACCAAAGGCAAAACACTTCA 1654
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1572 TTTAATGGCGGTGATGTTCGTGAAGCGGAACGTGATTGAAACCAAAGGAAAAACACTTCA 1631
Query 1655 AGAGATTGAGATCTCTCTACTAGCCAAACCATGAATGTGTATTCATTCTCTCTCTATGTC 1714
|||||||||||| ||||||||||||||||||||||||||| |||| |||||| || |
Sbjct 1632 AGAGATTGAGATTTCTCTACTAGCCAAACCATGAATGTGTTTTCAGTCTCTC---AT--C 1686
Query 1715 TTGTCGGTCACTGTTGTATAATCAAATAAAA 1745
|||| ||||||||||||||||||||||||||
Sbjct 1687 TTGTTGGTCACTGTTGTATAATCAAATAAAA 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87850953750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5