BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475830 Length=1208 Score E Sequences producing significant alignments: (Bits) Value AT1G67328.1 | Symbols: | other RNA | chr1:25213843-25215050 RE... 1869 0.0 AT1G67330.1 | Symbols: | Protein of unknown function (DUF579) ... 1853 0.0 > AT1G67328.1 | Symbols: | other RNA | chr1:25213843-25215050 REVERSE LENGTH=1208 Length=1208 Score = 1869 bits (1012), Expect = 0.0 Identities = 1148/1213 (95%), Gaps = 11/1213 (1%) Strand=Plus/Minus Query 1 TTTACTATTACCCTTTTaaaaaaaTTTCTCATTAAAATGTAAATAAACTACATTTGATCA 60 ||||||||||||||||| |||| ||| ||||||||||| |||||||||| ||||||||| Sbjct 1208 TTTACTATTACCCTTTT-AAAACTTTTTTCATTAAAATGGAAATAAACTATATTTGATCA 1150 Query 61 GTTGAGATATAT-TCTTAAGAGAAATGAGTAAATTAGATTAAAAGAACAACGAGGATTGA 119 |||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1149 GTTGAGATCTATAT-TTAAGAGAAGTGAGTAAATTAGATTAAAAGAACAACGAGGATCGA 1091 Query 120 TCAATCATACGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1090 TCAATCATACGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCA 1031 Query 180 TTAGCATTATTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCAT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1030 TTAGCATTATTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCAT 971 Query 240 CAGCCTCTCTCGCCAAACCCAACAAAAA-CAAATCAAACATGATTCAAGACAAGTCGAAA 298 |||||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||| Sbjct 970 CAGCCTCTCTCGCCAAACCC--CAAAAAGCAAACCAAACATGATTCAAGACAAGTCTAAA 913 Query 299 GGTGCAAAGCAAGCCCTTCTAGAGCGGCCATGGTTCCTCG-TGGTGGCTCTAGCTGGTCT 357 |||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||| Sbjct 912 GGTGCAAAGCAAACGCTTCTAGAGCGGCCATGGTTCCTCGCTG-TGGCTCTAGCTGGTCT 854 Query 358 TTTAGGTGGCGCCATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACTTTGTCACT 417 | |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 853 TATAGGTGGCGCAATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACCTTGTCACT 794 Query 418 ATGCTCGACAGCTAAGAACACGGCTGCGTCCATAGCCGAATATTCAGCCACCCCAATTCA 477 ||||| || ||||||||||| |||||||| |||||| |||| ||||||||||||| || Sbjct 793 CTGCTCCACGGCTAAGAACACAGCTGCGTCTATAGCCAAATACACAGCCACCCCAATCCA 734 Query 478 ACTACAATCCATCGTTCACTATGCCACCTCACACACCGTCCCTCAACAATCTTTCGAGGA 537 ||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 733 ACTCCAATCCATCGTCCACTACGCCACTTCACACACCGTCCCTCAACAATCTTTCGAGGA 674 Query 538 GATCTCGATCTCTTTAAACGTCCTCAAGGAACGTCTCCCTTGTAACTTCCTAGTCTTTGG 597 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 673 GATCTCGATCTCTTTAAACGTCCTCAAGGAGCGTCTCCCTTGTAACTTTCTAGTCTTTGG 614 Query 598 CCTAGGCCGTGATTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACTACTGTGTTCCT 657 ||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 613 CCTCGGCCGCGACTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACAACTGTGTTCTT 554 Query 658 GGAGGAGGATCCTGAGTGGATAGAGGCCGTCCTCAAGGATGCTCCATCCCTCAGGGCCCA 717 ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 553 GGAAGAGGATCCTGAGTGGATAGAGGCCGTCCTCAAGGACGCCCCATCCCTCAGGGCCCA 494 Query 718 CCATGTTCAGTACCGGACCCACCTTTCGGAGGCCGGCCGCCTTCTCTCGACTTACAAGAA 777 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 493 CCATGTTCAGTACCGGACCCACCTTTCTGAGGCCGGCCGCCTTCTCTCGACTTACAAGAA 434 Query 778 CGAACCCATGTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTT 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 433 CGAACCCATGTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTT 374 Query 838 GGCGTTGACTTCGCTTCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGA 897 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 GGCGTTGACTTCTCTCCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGA 314 Query 898 CGCACCAAAGGGGTACTTCCCGGTGGCGCCCGGAAGGATGGCGGCGATATTTTCCTCGGC 957 ||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 313 CGCACCAAAAGGGTACTTCCCAGAGGCGCCAGGAAGGATGGCGGCGATATTTTCCTCGGC 254 Query 958 CGTCATGGCACGTAACCGGAAAGGTGATGGCACGACACACGTCTTCCTACATGACGTTAA 1017 | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 253 CATCATGGCACGTAACCGGAAAGGTGATGGCACGACTCACGTCTTCCTTCATGACGTTAA 194 Query 1018 CCGCTATGTGGAGAA-GACTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACT 1076 |||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 193 CCGCAAAGTGGAGAACG-CTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACT 135 Query 1077 CCGCAGGTAGGCTCTGGCACTTCGAGATACCTAACGCTGCTAACATGACCGACCAGCCTG 1136 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 134 CCGTAGGTAGGCTCTGGCACTTCGAGATACCTAACGCCGCTAACATGACCGACCAGCCTG 75 Query 1137 GTGACCGGTTTTGCTAGAGTGCGCCAA-TATTCGTTCTTCGTTACTTCTTTTAATTGGAA 1195 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 74 GTGACCGGTTTTGCTAGAGTGCGCCAAATATTCGTTCTTCGATACTTCTTTTAATTGGAG 15 Query 1196 CACCGCATAGTTC 1208 ||||||||||||| Sbjct 14 CACCGCATAGTTC 2 > AT1G67330.1 | Symbols: | Protein of unknown function (DUF579) | chr1:25213852-25215174 FORWARD LENGTH=1323 Length=1323 Score = 1853 bits (1003), Expect = 0.0 Identities = 1139/1204 (95%), Gaps = 11/1204 (1%) Strand=Plus/Plus Query 10 ACCCTTTTaaaaaaaTTTCTCATTAAAATGTAAATAAACTACATTTGATCAGTTGAGATA 69 |||||||| |||| ||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct 1 ACCCTTTT-AAAACTTTTTTCATTAAAATGGAAATAAACTATATTTGATCAGTTGAGATC 59 Query 70 TAT-TCTTAAGAGAAATGAGTAAATTAGATTAAAAGAACAACGAGGATTGATCAATCATA 128 ||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 60 TATAT-TTAAGAGAAGTGAGTAAATTAGATTAAAAGAACAACGAGGATCGATCAATCATA 118 Query 129 CGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCATTAGCATTA 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCATTAGCATTA 178 Query 189 TTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCATCAGCCTCTC 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCATCAGCCTCTC 238 Query 249 TCGCCAAACCCAACAAAAA-CAAATCAAACATGATTCAAGACAAGTCGAAAGGTGCAAAG 307 ||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||||| Sbjct 239 TCGCCAAACCC--CAAAAAGCAAACCAAACATGATTCAAGACAAGTCTAAAGGTGCAAAG 296 Query 308 CAAGCCCTTCTAGAGCGGCCATGGTTCCTCG-TGGTGGCTCTAGCTGGTCTTTTAGGTGG 366 ||| | ||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 297 CAAACGCTTCTAGAGCGGCCATGGTTCCTCGCTG-TGGCTCTAGCTGGTCTTATAGGTGG 355 Query 367 CGCCATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACTTTGTCACTATGCTCGAC 426 ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| || Sbjct 356 CGCAATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACCTTGTCACTCTGCTCCAC 415 Query 427 AGCTAAGAACACGGCTGCGTCCATAGCCGAATATTCAGCCACCCCAATTCAACTACAATC 486 ||||||||||| |||||||| |||||| |||| ||||||||||||| ||||| ||||| Sbjct 416 GGCTAAGAACACAGCTGCGTCTATAGCCAAATACACAGCCACCCCAATCCAACTCCAATC 475 Query 487 CATCGTTCACTATGCCACCTCACACACCGTCCCTCAACAATCTTTCGAGGAGATCTCGAT 546 |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 476 CATCGTCCACTACGCCACTTCACACACCGTCCCTCAACAATCTTTCGAGGAGATCTCGAT 535 Query 547 CTCTTTAAACGTCCTCAAGGAACGTCTCCCTTGTAACTTCCTAGTCTTTGGCCTAGGCCG 606 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 536 CTCTTTAAACGTCCTCAAGGAGCGTCTCCCTTGTAACTTTCTAGTCTTTGGCCTCGGCCG 595 Query 607 TGATTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACTACTGTGTTCCTGGAGGAGGA 666 || ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| Sbjct 596 CGACTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACAACTGTGTTCTTGGAAGAGGA 655 Query 667 TCCTGAGTGGATAGAGGCCGTCCTCAAGGATGCTCCATCCCTCAGGGCCCACCATGTTCA 726 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 656 TCCTGAGTGGATAGAGGCCGTCCTCAAGGACGCCCCATCCCTCAGGGCCCACCATGTTCA 715 Query 727 GTACCGGACCCACCTTTCGGAGGCCGGCCGCCTTCTCTCGACTTACAAGAACGAACCCAT 786 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 716 GTACCGGACCCACCTTTCTGAGGCCGGCCGCCTTCTCTCGACTTACAAGAACGAACCCAT 775 Query 787 GTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTTGGCGTTGAC 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 GTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTTGGCGTTGAC 835 Query 847 TTCGCTTCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGACGCACCAAA 906 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 TTCTCTCCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGACGCACCAAA 895 Query 907 GGGGTACTTCCCGGTGGCGCCCGGAAGGATGGCGGCGATATTTTCCTCGGCCGTCATGGC 966 ||||||||||| | |||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 896 AGGGTACTTCCCAGAGGCGCCAGGAAGGATGGCGGCGATATTTTCCTCGGCCATCATGGC 955 Query 967 ACGTAACCGGAAAGGTGATGGCACGACACACGTCTTCCTACATGACGTTAACCGCTATGT 1026 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | || Sbjct 956 ACGTAACCGGAAAGGTGATGGCACGACTCACGTCTTCCTTCATGACGTTAACCGCAAAGT 1015 Query 1027 GGAGAA-GACTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACTCCGCAGGTA 1085 |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1016 GGAGAACG-CTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACTCCGTAGGTA 1074 Query 1086 GGCTCTGGCACTTCGAGATACCTAACGCTGCTAACATGACCGACCAGCCTGGTGACCGGT 1145 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1075 GGCTCTGGCACTTCGAGATACCTAACGCCGCTAACATGACCGACCAGCCTGGTGACCGGT 1134 Query 1146 TTTGCTAGAGTGCGCCAA-TATTCGTTCTTCGTTACTTCTTTTAATTGGAACACCGCATA 1204 |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1135 TTTGCTAGAGTGCGCCAAATATTCGTTCTTCGATACTTCTTTTAATTGGAGCACCGCATA 1194 Query 1205 GTTC 1208 |||| Sbjct 1195 GTTC 1198 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59337044190 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5