BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475836
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67360.2 | Symbols: | Rubber elongation factor protein (REF... 1489 0.0
> AT1G67360.2 | Symbols: | Rubber elongation factor protein (REF)
| chr1:25236811-25238216 REVERSE LENGTH=1205
Length=1205
Score = 1489 bits (806), Expect = 0.0
Identities = 999/1087 (92%), Gaps = 34/1087 (3%)
Strand=Plus/Plus
Query 1 AAACGATTCtttttttGATGCCCCCACAACACCCTCAGATCTAATCA-CAACCGTTGGAT 59
|||||||||||||||| || |||||| |||||||||||||| || | ||||||||||||
Sbjct 8 AAACGATTCTTTTTTTAAT-ACCCCAC-ACACCCTCAGATCT-ATTATCAACCGTTGGAT 64
Query 60 CGCGTCGACAAGTCCAATTCCACTCGTATTTTTAACCACTCCT--CACTCCTCAACGTGA 117
||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 65 TACGTGGACAAGTCCAATGCCACTCGTATTTTTAACCATTCCTCACACTCCTCAACGTGA 124
Query 118 TGTGAAGATACTTTGCTGTTTCACAACGTCATAAAGAACAGTGACAGGCGCGATTTCTTA 177
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 125 TGTGAAGATACTTTGCTGTTTCATAACGTCATAAAGAACAGTGACAGGCGAAATTTCTCA 184
Query 178 AGAAAGCAAATC-GAAGAACTCaaaaaaaaaaCTAAGATGGAAACAGAGAAGAAAAATAG 236
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 185 AGAAAGCAAATCGGAAGAACTCACAAAAAAAACTAAGATGGAGACAGAGAAGAAAAATAG 244
Query 237 CAAGGAGGTAGGGCTAAAACACCTAGGGTTCGTGAGAATTGCAGCGATCCAGATTCTGGC 296
||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 245 CAAGGAGGTAGCGCTAAAACACCTAGCGTTCGTGAGAATTGCAACGATCCATATTCTGGC 304
Query 297 TTCCGTCTCAAATCTGTACGACTACGCTAAACAAAACTCCGGTCCTCTCAAATCCGCCGT 356
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCCGTCTCAAATCTCTACGAATACGCTAAACAAAACTCCGGTCCTCTCAAATCCGCCGT 364
Query 357 GGAAAAGGTCGAAGGAGCCGTCACCACCGTCGTCACCCCTGTCTATCAGAAATTCAAAGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GGAAAAGGTCGAAGGAGCCGTCACCACCGTCGTCACCCCTGTCTATCAGAAATTCAAAGA 424
Query 417 TGTTCCAGATTCTCTCCTCGTCTTTCTAGATCACAAGGTGGGTGAAGTTTCGTATAAGTT 476
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 425 TGTTCCTGATTCTCTCCTGGTCTTTCTAGATCACAAGGTGGGTGAAGTTTCGTACAAGTT 484
Query 477 TGATGAGCATGCTCCTCCAATGGCTAA-ACAAGTGGTGAATCAAGCTCATGTGTTGATCT 535
||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||
Sbjct 485 TGATGAGCATGCTCCTCCAATGGCTAAGA-AAGTGGTGAATCAAGCACATGTATTGATCT 543
Query 536 ACAAGGCAACAGAGAAAGCTCAAAGCTTTGTGAAAGAGGCTCGTACCGGTGGTCCCAAAG 595
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACAAGGCGACAGAGAAAGCTCAAAGCTTTGTGAAAGAGGCTCGTACCGGTGGTCCCAAAG 603
Query 596 CTGCTTTTAGCTATGCTGCGACTGAGTACAAGTATTTCGTTGTGACCAACTCGGTTAAAG 655
|||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 604 CTGCGTTTAACTATGCTGCAACTGAGTACAAGTTTTTCGTTGTGACCAACTCGGTTAAAG 663
Query 656 TCTGGGCTAAACTTGACCAGTACAAACCAATCCATGCAGTGGGTGACAAAGCTTTGCCCG 715
|||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 664 TCTGGGCTAAACTTAACCAGTATAAACCAATCCATGCAATGGGTGACAAAGCTTTGCCTG 723
Query 716 TGGCTGCACACTTGTCTAGTCGGTACAACGATTTGGTGACGGATATGACTCAGATGGGTT 775
||||||||||||| || ||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 724 TGGCTGCACACTTTTCCAGTCGGTACAACGATTTGGTGACTGATATGACTAATATGGGTT 783
Query 776 ATTCTTTGGTTGGTTATCTTCCATTGGTTCCTGTTGATGACATTGTTAAGGCTTATGAGA 835
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 784 ACTCTTTGGTTGGTTATCTTCCGTTGGTTCCTGTTGATGACATTGTTAAGGCTTATGA-A 842
Query 836 AAG-AAGATGCA-GCACGAAAGAAAGGAGGAGAATCAGAAGAGACGGCTACTACTGATGG 893
||| |||||||| | | ||||||||||||| || | | ||||| | |
Sbjct 843 AAGGAAGATGCAAGGA-GAAAGAAAGGAGGGGA-T-A-------CGGCT------G--G- 883
Query 894 AAAGAAAGGAGAGACTGCTGATACTACTGATGG-GAATAAATCGTCGTCTGATTTGGAGT 952
|||||||||||||||| ||||| | ||||||| || |||||| |||||||||| |||||
Sbjct 884 AAAGAAAGGAGAGACTACTGATGCGGCTGATGGTGA-TAAATCATCGTCTGATTCGGAGT 942
Query 953 AGGATTGAGACATTTTGTGATTTGTTGTTGCTTTGGAAAGTTTGGCTTGTTGGGTTT-GG 1011
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 943 AGGATTGAGACATTTTGTGATTTGTTGCTGCTTTGGAAAGTTTGGTTTGTTGGGTTTTGG 1002
Query 1012 TTATGTGTGTAAATGATCTTAGGAACTCTCCTTTTTTCTTCTATCACAAAACTTTGAACT 1071
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1003 TTATGTGTGTAAATGATCTTAGGACCTCTCTTTTTTTCTTCTATCACAGAACTTTGAACT 1062
Query 1072 AGTGTTT 1078
|||||||
Sbjct 1063 AGTGTTT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5