BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475850
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44130.1 | Symbols: | Eukaryotic aspartyl protease family p... 1642 0.0
> AT1G44130.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:16787508-16789318 REVERSE LENGTH=1218
Length=1218
Score = 1642 bits (889), Expect = 0.0
Identities = 1119/1229 (91%), Gaps = 19/1229 (2%)
Strand=Plus/Plus
Query 7 TCAAGATTCTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTTCTCAATCAAAATCTTCC 66
|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 7 TCAAGATTTTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTCCTCTATCAAAATCTTCA 66
Query 67 ATCTTCAAAACCTTCCCCGGTAAtctctctcccaaat-ctcctctttcctcagtcgtcct 125
|||||||||||||| | | | ||||| || ||| ||||||||||||| |
Sbjct 67 ATCTTCAAAACCTT---C----A------T--CAAATCCT-CTCCTTCCTCAGTCGTCTT 110
Query 126 ccttctctccggcaacgtcttccctctcGGATACTACTCTGTCTTACTTCAAATAGGAAA 185
|| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 111 CCCTCTCTCCGGCAACGTCTTCCCTCTCGGATACTACTCAGTCTTAATGCAAATAGGAAG 170
Query 186 CCCTCCAAAGGCATTTGAGTTTGATATTGATACTGGTAGTGATATCACTTGGGTTCAATG 245
|||||||||||||||| | |||||||||||||| || || ||| ||||||||||||||||
Sbjct 171 CCCTCCAAAGGCATTTCAATTTGATATTGATACCGGAAGCGATCTCACTTGGGTTCAATG 230
Query 246 CGATGCTCCTTGCACTGGTTGTAATTTGCCTCCTAAACTTCAGTACAAGCCTAAAGGAAA 305
||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 231 TGATGCTCCTTGCAGTGGTTGCACTTTGCCTCCTAATCTTCAGTACAAGCCTAAAGGAAA 290
Query 306 CACTGTCCCGTGCTCAGACCCGATTTGTTTAGCACTTCACTTTCCTAACAATCCTCAATG 365
|| | ||||||||||| ||||||| ||| ||| ||||||| |||||||| ||||| ||
Sbjct 291 CATTATCCCGTGCTCAAACCCGATCTGTACAGCTCTTCACTGGCCTAACAAGCCTCATTG 350
Query 366 TCCAAACCCGAAAGAACAATGTGACTATGAAGTTAATTATGCTGATCAAGGTTCATCAAT 425
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 351 CCCAAACCCGCAAGAACAATGTGACTATGAAGTTAAATATGCTGATCAAGGTTCATCAAT 410
Query 426 GGGTGCACTTGTTATTGATCAGTTTCCTTTTAAACTCCTAAATGGCTCGGCCATGCAACC 485
|||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 411 GGGTGCACTTGTTACCGATCAGTTTCCTTTAAAACTCGTAAATGGCTCGTTCATGCAACC 470
Query 486 TCGTTTAGCATTCGGGTGTGGTTATGATCAGAGTTACCCTAGTGCACATCCTCCGCCCGC 545
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCCTGTAGCATTCGGGTGTGGTTATGATCAGAGTTACCCTAGTGCACATCCTCCGCCCGC 530
Query 546 GACTGCTGGAGTTTTGGGGCTTGGGAGAGGGAAAATTGGTCTCTTGACACAGCTTGTGTC 605
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 531 GACTGCTGGAGTTTTGGGACTTGGAAGAGGGAAAATCGGTCTCTTGACACAGCTTGTCTC 590
Query 606 CGCAGGACTAACGAGAAATGTTGTTGGACATTGCCTAAGTTCTAAAGGTGGAGGCTATTT 665
||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||
Sbjct 591 CGCGGGACTAACAAGAAATGTGGTTGGACATTGCTTAAGTTCTAAAGGTGGAGGCTTTTT 650
Query 666 GTTCTTTGGAGACACTCTCATTCCTTCCCTTGGTGTGGCCTGGACACCATTATTATCACC 725
|||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 651 GTTCTTTGGAGACAATCTTGTTCCTTCCATTGGTGTGGCATGGACACCATTATTATCACA 710
Query 726 AGACAACCACTACACGACTGGACCAGTCGAGCTTCTTTTCAACGGAAAGCCAACAGGTTT 785
|||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 711 AGACAACCACTACACGACCGGACCAGCCGATCTTCTCTTCAACGGAAAGCCAACAGGTTT 770
Query 786 ACAAGGACTTAAACTCATCTTTGACACCGGAAGCTCATACACTTACTTCAACAGCAAGAT 845
| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 771 AAAAGGACTTAAACTCATTTTTGACACCGGAAGCTCTTACACTTACTTCAACAGCAAGGC 830
Query 846 ATACCAAACAATAGTTAACCTGATCGGAAATGATCTGAAAGTCTCACCGTTGAAGGTTGC 905
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ATACCAAACAATAATTAACCTGATCGGAAATGATCTGAAAGTCTCACCGTTGAAGGTTGC 890
Query 906 CAAAGAAGATAAGACCTTACCAATCTGCTGGAAAGGAGCTAAGCCCTTCAAATCTGTTCT 965
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 891 GAAAGAAGATAAGACCTTACCAATCTGCTGGAAAGGAGCTAAGCCCTTTAAATCTGTTCT 950
Query 966 TGAGGTCAAGAACTTCTTCAAAACCATAACAATTAACTTTACCAATGCCAGAAGAAACAC 1025
||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||||||||
Sbjct 951 TGAGGTCAAGAACTTTTTCAAGACCATAACAATCAACTTCACCAATGGGAGAAGAAACAC 1010
Query 1026 TCAGCTCCAGATTCCACCCGAATCT-TATCTCATCATCTCTAAAACTGGTAATGCCTGCT 1084
||||||| | || ||||||||| | |||||||| ||||||||||||| || | ||||
Sbjct 1011 TCAGCTCTATCTTGCACCCGAAT-TATATCTCATTGTCTCTAAAACTGGAAACGTATGCT 1069
Query 1085 TGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACGTAATCGGAGATATCT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACGTAATCGGAGATATCT 1129
Query 1145 CTATGCAAGGGCTACTGATAATCTACGACAACGAGAAACAACAACTCGGATGGGTTTCTT 1204
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1130 CTATGCAAGGGCTAATGATGATCTACGACAACGAGAAGCAACAACTCGGATGGGTTTCTT 1189
Query 1205 CAAATTGCAATAAGCTTCCCAAAACATGA 1233
|| ||||||||||||||||||||||||||
Sbjct 1190 CAGATTGCAATAAGCTTCCCAAAACATGA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5