BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475878
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67740.1 | Symbols: PSBY, YCF32 | photosystem II BY | chr1:2... 1314 0.0
> AT1G67740.1 | Symbols: PSBY, YCF32 | photosystem II BY | chr1:25394068-25395154
REVERSE LENGTH=1087
Length=1087
Score = 1314 bits (711), Expect = 0.0
Identities = 803/847 (95%), Gaps = 8/847 (1%)
Strand=Plus/Plus
Query 1 CTCCAACTCACTTCTCATTGGATAAGACAACTATCAAGAAGCCTTCAATTTCAATTGGCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 CTCCAACTCACTTCTCATTGGATAAGACAACTATCAAGAAGCCTTCAATTTCCATTGGTC 60
Query 61 CTCCTCTCTCCTTCTATAATCCCAAAAACCATCTCACAAACTCCTCAAACCTC--TCT-- 116
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 61 CTCCTCTCTCCTTCTATAATCCCAAAAACCATCTCACAAACTCATCAAACCTCTTTCTCA 120
Query 117 TCTCATCTTCAAGCCATCTCCG---ATCATCAGACAATGGCAGCAACTATGGCAACAGCA 173
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 121 TCTCATCTTCAAGCCATCTCCGATCATCATCAGACAATGGCAGCAGCTATGGCAACAGCA 180
Query 174 ACCAAGTGCATGTCTCTAAACCCATCTCCTCCTaaactccaaaaccaaaccaaacccaaa 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 ACCAAGTGCATGTCTCTAAACCCATCTCCTCCTAAACTCCAAAACCAAACCAAATCCAAA 240
Query 234 ccattcatctccctaccaaccccaccaaaaccTAACGTCTCTCTCGCCGTCTCAAGCACC 293
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 241 CCATTCATCTCCCTACCAACCCCACCAAAACCAAACGTCTCTCTCGCCGTCACAAGCACC 300
Query 294 GCTCTAGCCGGAGCCGTCTTCTCTTCTCTCAGCTACTCCGAGCCAGCTTTAGCCATCCAA 353
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 301 GCCCTAGCCGGAGCCGTCTTCTCTTCCCTCAGCTACTCTGAGCCAGCTTTAGCCATCCAA 360
Query 354 CAGATCGCCCAGCTCGCCGCAGCAGACGCCGGTAGCGACAACCGTGGCTTAGCTCTTCTC 413
|||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 361 CAGATCGCTCAGCTCGCTGCAGCAAACGCCAGTAGCGACAACCGTGGCTTAGCTCTTCTC 420
Query 414 CTTCCTATTATCCCAGCCATTGCATGGGTCCTTTACAACATCCTCCAGCCAGCTATTAAC 473
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCCCATCGTCCCAGCCATTGCATGGGTCCTTTACAACATCCTCCAGCCAGCTATTAAC 480
Query 474 CAGGTCAACAATATGCGTGAGAGTAAAGGTATCGTTGTTGGTCTAGGTATTGGTGGTGGT 533
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAGGTCAACAAGATGCGTGAGAGTAAAGGTATCGTTGTTGGTCTAGGTATTGGTGGTGGT 540
Query 534 CTTGCAGCGTCAGGGCTTTTGACTCCACCACCAGAGGCTTACGCGGCGGCAGAAGCGGCA 593
||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||
Sbjct 541 CTTGCAGCGTCAGGGCTTTTGACTCCACCTCCGGAGGCTTATGCTGCGGCAGAAGCGGCG 600
Query 594 GCAGCTGGTTCAGACAGCAGAGGACAGCTGTTGTTGATTGTTGTGACACCTGCACTACTT 653
|| ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 601 GCTGCTAGTTCAGACAGCAGAGGACAGTTGTTGTTGATTGTTGTGACACCGGCACTACTT 660
Query 654 TGGGTTCTGTACAATATATTGCAGCCAGCTTTGAACCAACTCAACAAGATGAGGTCTGGG 713
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 TGGGTTCTGTACAATATCTTGCAGCCAGCTTTGAACCAAATCAACAAGATGAGGTCTGGG 720
Query 714 GACTAAAATCttatatatataattatattattattaATCATCTTTGGGATTCAAATGTAA 773
|| |||||||||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 721 GATTAAAATCTTATATATATA-TAATATTATTATAAATCATCTTTGGGATTCAAATGTAA 779
Query 774 AATTAATCCTTTGTTTTATGGACAGTTCTATGTTTAAATTTTTGGACTAATATCATTTCT 833
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 780 AATTAATCCTTTGTTTTATGGACAGTTTTATGTTTACATTTTTGGACTAATATCGTTTCT 839
Query 834 TTTATCG 840
||||||
Sbjct 840 CTTATCG 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5