BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475885 Length=1654 Score E Sequences producing significant alignments: (Bits) Value AT1G67800.2 | Symbols: | Copine (Calcium-dependent phospholipi... 2475 0.0 > AT1G67800.2 | Symbols: | Copine (Calcium-dependent phospholipid-binding protein) family | chr1:25420780-25423403 REVERSE LENGTH=1717 Length=1717 Score = 2475 bits (1340), Expect = 0.0 Identities = 1558/1662 (94%), Gaps = 20/1662 (1%) Strand=Plus/Plus Query 5 AAGAAGGGAACTTTGTTGTTGGGTTGATCTGAATTTTTGATTTATGCTTCAAGTGTTGCA 64 |||||||||||||||||||||| || |||||| ||||||| ||||||| |||||||||| Sbjct 64 AAGAAGGGAACTTTGTTGTTGGCTTAATCTGATTTTTTGACATATGCTTGAAGTGTTGCA 123 Query 65 GGCGATTGTTTTGTTTATCTTGTTTTGGGTTTGGTTGTCTTGGATGGGAGGAAGTAGCTC 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 GGCGATTGTTTTGTTTATCTTGTTTTGGGTTTGGTTGTCTTGGATGGGAGGAAGTAGCTC 183 Query 125 AAAAGAGT--CGAATA-GAGGTGAAAGTAGTCGAAGGTATGAACGTAGTGTGTCTGGTAG 181 ||||||| | | | |||||| |||| |||| ||||||||||||||||||||||| || Sbjct 184 TAAAGAGTCACCTAGAGGAGGTGGAAGTGGTCGTAGGTATGAACGTAGTGTGTCTGGGAG 243 Query 182 CTCTTCTTATTCGTCTGCTTGGGACCAGAACAGCTATTATCAGACACCAAACCATCCATC 241 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 244 CTCATCTTATTCGTCTGCTTGGGACCAGAGCAGCTATTATCAGACACCAAACCATCCATC 303 Query 242 TGCGTCTCCTGTTTCCTCCTACAATTCTGGGAGACAAACTCCGAAGAATCTTGAGAGGAA 301 ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 304 TGCGTCTCCTGTTTCATCCTATAATTCTGGGAGACAAACACCGAAGAATCTTGAGAGGAA 363 Query 302 GTATTCACGGATTGCTGATAACTACCGTTCCATCGATGAGGTTACCGCTGCTCTTTCACA 361 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 364 GTATTCACGGATTGCTGATAACTACCGTTCCATTGATGAGGTTACCGCTGCTCTTTCACA 423 Query 362 TGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACAAAGAGCAATGAGTG 421 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 424 TGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACCAAGAGCAACGAGTG 483 Query 422 GACAGGGGCAAGATCATTTGGTAGGAAGAGTCTGCATTACATTGGAACAACTCCAAACCC 481 ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 484 GACAGGGGCGAGATCATTTGGTAGGAAGAGTCTGCATTTCATTGGAACTACTCCAAACCC 543 Query 482 TTACCAGCAAGCTATTTCCATCATTGGAAAGACTTTGTCAGTTTTTGATGAGGATAATTT 541 ||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 544 TTATCAACAAGCTATTTCCATCATTGGAAAGACTTTATCGGTTTTTGATGAGGATAATTT 603 Query 542 GATCCCCTGTTATGGATTCGGAGATGCTACAACCCATGATCAGGATGTCTTCAGTTTCAA 601 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 604 GATCCCCTGTTATGGATTTGGAGATGCTACAACTCATGATCAGGATGTCTTCAGTTTCAA 663 Query 602 TCCCAATGATACATTTTGTAACGGGTTTGAAGAAGTTCTCATGTGTTACAGAGAGATTGT 661 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 TCCCAATGATACATATTGTAACGGGTTTGAAGAAGTTCTCATGTGTTACAGAGAGATTGT 723 Query 662 TCCGCAGCTCCGTCTTTCAGGTCCGACATCTTTTGCACCCATCATTGAAAGGGCCATGAC 721 ||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 724 TCCCCAGCTTCGTCTCTCAGGTCCGACATCTTTTGCACCTATCATCGAAAGGGCCATGAC 783 Query 722 AATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATCATCGCTGACGGACAGGT 781 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 784 AATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATTATCGCTGATGGACAGGT 843 Query 782 GACAAGAAGTGTTGATACAGATAACGGCGGATTCAGTCCACAAGAGCAGCAGACTATTGA 841 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 844 GACAAGAAGTGTTGATACAGATAACGGTGGATTCAGTCCACAAGAGCAGCAGACTATTGA 903 Query 842 TGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTGTTGGTGTTGGAGATGG 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 TGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTGTTGGTGTTGGAGATGG 963 Query 902 -CCCTTGGGACACCATGAGACAGTTTGATGACAACATCCCTGCTCGTGCCTTTGACAATT 960 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 964 TCCC-TGGGACACCATGAGACAGTTTGATGACAACATCCCCGCTCGTGCCTTTGACAATT 1022 Query 961 TCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATCCAGCAAGAAAAGAGG 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 TCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATCCAGCAAGAAAAGAGG 1082 Query 1021 CAGAATTCGCGCTTTCCGCCTTGATGGAGATCCCGTCTCAGTATAAAGCCACCCTCGAGC 1080 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1083 CAGAATTCGCGCTTTCTGCCTTGATGGAGATCCCGTCTCAGTATAAAGCCACCCTCGAAC 1142 Query 1081 TAGGCTTACTTGGACAGAGAACTGGACATTGTCCAAACAGGATTGCGCTTCCACCACCAA 1140 |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| Sbjct 1143 TAGGCTTACTTGGACAAAGAACCGGACATTGTCCAGACAGGATTGCGCTTCCACCACCAA 1202 Query 1141 CTTATGCTACTCAATCTATGCGCAACAGCCCAAGAACTTCCCGATCAACCAGCTTTCAAA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1203 CTTATGCTACTCAATCTATGCGCAACAGCCCAAGAACTTCCCGATCAACCAGTTTTCAAA 1262 Query 1201 ACAGACCATATGATAATGGTGTTTCCTCTACACCACCTTCAACTACTCGTAACGAGGGCC 1260 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1263 ACAAACCATATGATAATGGTGTTTCCTCTACACCACCTTCAACTACTCATAACGAGAGCC 1322 Query 1261 AGCAACAGGTTTGCCCCGTATGTCTAGTGAGTCCAAAGAACTTGGCTTTCAACTGTGGTC 1320 |||||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||| Sbjct 1323 AGCAACAGTTTTGCCCCGTATGTCTAGTGAGTGCAAAGAACATGGCTTTCAATTGTGGTC 1382 Query 1321 ATCAGACTTGCTCAGAATGTGGGGAGGACCTCAATATTTGCCCCATTTGCCGGAGCTCAA 1380 ||||||||||| | | ||||||||| |||||| || | || ||||||||||||||||||| Sbjct 1383 ATCAGACTTGCGCTGGATGTGGGGAAGACCTCCATGTGTGTCCCATTTGCCGGAGCTCAA 1442 Query 1381 TCTCGGTTCGTATCAAGCTTTATTAAGATAAC-C-CTCAAGAGCTAAAGGAACCCAAAGG 1438 ||||||||||||||||||||||||||||||| | ||||||| || ||||||||| | || Sbjct 1443 TCTCGGTTCGTATCAAGCTTTATTAAGATAAGTCTCTCAAGAACTGAAGGAACCCGA-GG 1501 Query 1439 TGACCCTGAGATCATTT-ACAGCAAACTTCATCCCAACTTAGATCTCATGACATTACCAG 1497 || | ||||||| ||| ||||| ||| |||||||||||||||||||| ||||||| Sbjct 1502 TGGTC-TGAGATC-TTTCACAGCCAACACCATCCCAACTTAGATCTCAT----TTACCAG 1555 Query 1498 TGTCCTAGCATTTGTTTTTACTTTGAGCGGAATACCCGGCACCTCTCAAAGGTTT-GTAG 1556 ||||||| ||||||||||||||||||| |||||| |||| |||||||||||||| |||| Sbjct 1556 TGTCCTAACATTTGTTTTTACTTTGAGGGGAATAACCGGTTCCTCTCAAAGGTTTTGTAG 1615 Query 1557 ATAATCTGTTGTCAGTTTTGAATTCTCATTGCACATGGAAAAACCACAGCAGACTCTCCC 1616 |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| | Sbjct 1616 ATAATCTGTTGTCAATTTTGCATTCTCATTGCACATGAAAAAACCACAGCAGACTCTCTC 1675 Query 1617 GTAAATAAAGGATCCTTTGG-TG---TTACAGATTTTTACTT 1654 || ||||||||||||||| || ||||| |||||||||| Sbjct 1676 GTGAATAAAGGATCCTTTCTCTGCGGTTACACATTTTTACTT 1717 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81726487260 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5