BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475901 Length=2647 Score E Sequences producing significant alignments: (Bits) Value AT1G67930.1 | Symbols: | Golgi transport complex protein-relat... 4143 0.0 > AT1G67930.1 | Symbols: | Golgi transport complex protein-related | chr1:25474140-25477423 REVERSE LENGTH=2668 Length=2668 Score = 4143 bits (2243), Expect = 0.0 Identities = 2527/2661 (95%), Gaps = 31/2661 (1%) Strand=Plus/Plus Query 2 TTTGAAAAATGAGTATCATCGCTTTGA--T-CTGCTAAAATCGCCATTGCAAAAAATTCA 58 ||||||||||||| | |||||||||| | ||||||||||||||||||| |||||||| Sbjct 8 TTTGAAAAATGAG--T-ATCGCTTTGATCTCCTGCTAAAATCGCCATTGC--AAAATTCA 62 Query 59 AAACCTGTAGAGA-AGAAA-T-T--GAAAATGGCACTACCTCCTTCGTCTCCTT---CAT 110 ||||||||||||| |||| | | ||||||||||||||||| |||||||||| ||| Sbjct 63 AAACCTGTAGAGATTGAAACTGTAAAAAAATGGCACTACCTCCATCGTCTCCTTCACCAT 122 Query 111 CATCTCCATCTCTTCAACGTCTCTCCACCTTCAAAAACCCTCCTCCTTCTTCACTCTCCT 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 CATCTCCATCTCTTCAACGTCTCTCCACCTTCAAAAACCCTCCTCCTTCTTCACTCTCCT 182 Query 171 CCGCCGCACCACCACCACAAACACCGTCATCTTCCTCCTCTTCGCCGCTCGATTCTTTCG 230 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 183 CCGGCGCACCACCACCACAAACACCGTCATCTTCCTCTTCTTCGCCGCTCGATTCTTTTG 242 Query 231 CCACCGATCCAAttctctcccctttcctctc-tccttccttctcctccgcatctttctcc 289 ||||||||||||| |||||||| |||||||| | ||||||||||||||||||| |||||| Sbjct 243 CCACCGATCCAATCCTCTCCCCATTCCTCTCAT-CTTCCTTCTCCTCCGCATCATTCTCC 301 Query 290 tccgccgctctcgcttctggatctccggcttccACCGCCGAACGTCTCCACCAAGCTATC 349 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 302 TCCGCCGCTCTCGCTTCTGGATCTCCGGCCTCCACCGCCGAACGTCTCCACCAAGCAATC 361 Query 350 CGCCTCCTCGATTCACAGCTCCGTAATGACGTCAtctctcgtcaccctgaattgctcgct 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 CGCCTCCTCGATTCACAGCTCCGTAATGACGTCATCTCTCGTCACCCTGAATTGCTCGCT 421 Query 410 cagctctcttctctctcacacgccgatatctctctctcttctctccgatcctccgtctct 469 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 422 CAGCTCTCTTCTCTCTCACACGCCGATGTATCTCTCTCTTCTCTCCGATCCTCCGTCTCT 481 Query 470 tcactccaatctTCAATTCGCCGTGTTAGATCCGATCTCTCTGAACCAATCAAATCGATC 529 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 482 TCACTCCAATCTTCAATTCGCCGTGTCAGATCCGACCTCTCTGAACCGATCAAATCGATC 541 Query 530 CGATCCAAATCTGTTCAGCTATCAAATCTCCTCT-CCGCTACTGAGTTACTCTCTCACTC 588 ||||| ||||||||||||||||| ||||||| | | |||||||||||||| |||||||| Sbjct 542 CGATCTAAATCTGTTCAGCTATCTAATCTCC-ATACAGCTACTGAGTTACTATCTCACTC 600 Query 589 GGTTCGTACGCTTCGTCTCTCTAAGAAGCTTCGAGATCTAACGGATTCTCCTGATCCAGA 648 ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 601 CGTTCGTACGCTTCGTCTCTCTAAGAAGCTTCGAGATCTAGCGGATTTTCCTGATCCAGA 660 Query 649 TAAGATCGATCTCACCAAAGCTGCACAGCTCCATTTCGAGATCTTAACAATGTGTAAAGA 708 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 661 TAAGATCGATCTCACTAAAGCTGCACAGTTCCATTTCGAGATCTTAACAATGTGTAAAGA 720 Query 709 GTACGATCTCTTCGGCATTGATGTGATCGACGAAGAAATCAAGTTTGTTACTGAGATTGG 768 ||| |||||||| |||||||||||||| || || |||||||||||||||||||||||||| Sbjct 721 GTATGATCTCTTTGGCATTGATGTGATTGATGAGGAAATCAAGTTTGTTACTGAGATTGG 780 Query 769 TGAGAAATTGAGGTCTGAAGCGATGAAGGTGTTGGAGAGAGGCATGGAAGGGTTGAATCA 828 ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 781 AGAGAAATTGAGATCTGAAGCTATGAAGGTGTTGGAGAGAGGCATGGAAGGGTTGAATCA 840 Query 829 AGCTGAGGTTGGGACTGGGCTGCAAGTTTTCTATAACCTTGGAGAGCTTAAGCCTACGGT 888 |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 841 AGCTGAAGTTGGGACTGGTTTGCAAGTTTTCTATAACCTTGGAGAGCTTAAGTCTACGGT 900 Query 889 AGATCAATTGGTGAACAAGTATAAGGGAATGGCTGTGAAGAGTGTGAGTGTTGCTATGGA 948 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GGATCAATTGGTGAATAAGTATAAGGGAATGGCTGTGAAGAGTGTGAGTGTTGCTATGGA 960 Query 949 TATGAAAGCTATTTCTTCTGGCTCAGGTGGTGGCTTCGGGCCTGGTGGGATTAGGTCTAG 1008 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TATGAAAGCTATTACTTCTGGCTCAGGTGGTGGCTTCGGGCCTGGTGGGATTAGGTCTAG 1020 Query 1009 TGGAGCACCGCACATTGGTGGCGGTGCTAAAGTTAGGGAGGCGTTGTGGCAGAGGATGGC 1068 ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1021 CGGATCACCGCATATTGGTGGTGGTGCTAAAGTTAGGGAGGCGTTGTGGCAGAGGATGGC 1080 Query 1069 TAGTTGTATGGAGCAATTGAATTCACTTGTAGTTGCTGTGTGGCATTTGCAGCGTGTACT 1128 |||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TAGTTGTATGGAACAGTTGTGTTCACTTGTAGTTGCTGTGTGGCATTTGCAGCGTGTACT 1140 Query 1129 GTCTAAGAAGAGGGATCCATTTACTCATGTCCTTCTTCTTGACGAAGTCATCAAGGAAGG 1188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GTCTAAGAAGAGGGATCCATTTACTCATGTCCTTCTTCTTGACGAAGTCATCAAGGAAGG 1200 Query 1189 GGATTCTATGTTAACCGACAGAGTCTGGGATGCGCTTGTGAAGGCGTTTACTAGCCAAAT 1248 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 1201 CGATTCTATGTTAACCGATAGAGTCTGGGATGCACTTGTGAAGGCTTTTACTAGCCAAAT 1260 Query 1249 GAAGTCTGCATACACAGCTTCGAGTTTTGTAAAAGAAATATTCACCATGGGATATCCAAA 1308 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1261 GAAGTCTGCATACACAGCTTCGAGTTTTGTAAAAGAAATATTCACCATGGGATATCCGAA 1320 Query 1309 GCTTGTGTCTATGATAGAAAATCTTCTTGAAAGGATTTCTCGTGATACAGATGTTAAAGG 1368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GCTTGTGTCTATGATAGAAAATCTTCTTGAAAGGATTTCTCGTGATACAGATGTTAAAGG 1380 Query 1369 AGTGTTACCTGCCATTAATTTAGAAAGGAAAGAACAAATGGTTGCATGCATTGCAATATT 1428 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1381 AGTGTTACCTGCCATTAATTTAGAAAGGAAAGAACAAATGGTTGCATGCATTGCTATATT 1440 Query 1429 CCAAACTGCTTTCTTATCCCTTTGCTTTGGCCGCTTGTCAGATCTTGTGAACTCGATATT 1488 ||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct 1441 CCAGACTGCTTTCTTATCCCTATGCTTTGGCCGCTTGTCAGACCTTGTAAACTCGATATT 1500 Query 1489 CCCTATGTCGAGCCGTGGGAGTTTACCTTCGAAAGAACAGATCTCACAGGTATTATCACA 1548 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1501 CCCTATGTCGAGCCGTGGGAGTTTACCTTCGAAAGAACAGATTTCACAGGTATTATCACA 1560 Query 1549 CATTCAAGATGAGATTGAGGCTGTTCATCCAGATGCTCGTTTGACTCTTCTAGTTTTGCG 1608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1561 CATTCAAGATGAGATTGAGGCTGTTCATCCAGATGCTCGTTTGACTCTTCTAGTTTTGCG 1620 Query 1609 TGAGATAGGCAAGGCCCTCAGTAACCTAGCTCAACGAGCTGAGTGCCAGATTTCTACAGG 1668 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 TGAGATAGGCAAGGCCCTTAGTAACCTAGCTCAACGAGCTGAGTGCCAGATTTCTACAGG 1680 Query 1669 CCCTGAGACGCGGCAGATATCAGGTCCTGCGACTTCAACACAGATCAGGAACTTCACATT 1728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1681 CCCTGAGACGCGGCAGATATCAGGTCCTGCGACTTCAACACAGATCAGGAACTTCACATT 1740 Query 1729 ATGTCAGCATTTGCAAGGAATCCACACACATATCTCATCCATGGTAGCAGACCTTCCCAG 1788 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1741 ATGTCAGCATCTGCAAGGAATCCACACACATATCTCATCCATGGTAGCGGACCTTCCCAG 1800 Query 1789 TATTGCTGCTGATGTATTGTCTCCTTATCTGGCTGCAATCTATGATGCCGCATGTGAGCC 1848 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1801 TATTGCTACTGATGTATTGTCTCCTTATCTGGCTGCAATCTATGATGCGGCATGTGAGCC 1860 Query 1849 AGTTACACCTTTGTTTAAAGCAATGCGAGACAAGCTCGAGTCATGCATTCTTCAAATCCA 1908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1861 AGTTACACCTTTGTTTAAAGCAATGCGAGACAAGCTCGAGTCATGCATTCTTCAAATCCA 1920 Query 1909 TGATCAAAACTTTGGTGTTGATGATGCTG-CTATGGACAACAATGCTTCCTCATACATGG 1967 ||||||||||||||||| |||||| |||| | ||||||||||| |||||||||||||||| Sbjct 1921 TGATCAAAACTTTGGTGCTGATGACGCTGAC-ATGGACAACAACGCTTCCTCATACATGG 1979 Query 1968 AAGAGTTGCAGAGATCGATTCTTCACTTCCGCA-GCGAGTTCCTATCTAGACTATTGCCA 2026 | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1980 AGGAGTTGCAGAGATCGATTCTTCACTTCCGCAAG-GAGTTCCTATCTAGACTATTGCCT 2038 Query 2027 TCCGCAGCAACCGCTAACACTGCAGGGACAGAATCGATCTGCACTAGACTCACAAGACAA 2086 |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 2039 TCCGCAGCAAATGCTAACACTGCAGGAACAGAATCGATCTGCACAAGACTCACAAGACAA 2098 Query 2087 ATGGCTTCGAGGGTTTTGATCTTCTACATCAGACATGCGTCCCTTGTGCGACCGCTTTCA 2146 ||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 2099 ATGGCGTCAAGGGTTTTGATCTTCTACATCAGACATGCATCCCTTGTGCGACCACTTTCA 2158 Query 2147 GAATGGGGAAAACTCAGGATGGCCAAAGACATGGCCGAGCTTGAACTTGCAGTGGGACAA 2206 ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 2159 GAATGGGGAAAACTCAGAATGGCCAAAGACATGGCCGAGCTGGAACTAGCAGTGGGACAG 2218 Query 2207 AATCTGTTTCCCGTGGAACAACTCGGAGCACCGTACAGAGCTCTTAGAGCATTTAGACCA 2266 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2219 AATCTATTTCCCGTGGAACAACTCGGAGCACCGTACAGAGCTCTTAGAGCGTTTAGGCCT 2278 Query 2267 CTGATTTTCCTGGAAACATCTCAAATGGGATCATCTCCTCTCATCCAGGATCTACCACCG 2326 || ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 2279 TTGGTTTTCCTGGAAACATCTCAAATGGGATCATCTCCTCTCATCAATGATCTACCACCG 2338 Query 2327 AGCATCGTCCTCCATCATCTCTACACGAGAGGCCCGGACGAGTTGGAGTCACCAATGCAG 2386 ||||||||||| |||||||||||||| |||||||| |||||||| |||||||| |||||| Sbjct 2339 AGCATCGTCCTACATCATCTCTACACAAGAGGCCCAGACGAGTTAGAGTCACCGATGCAG 2398 Query 2387 AAGAACAGACTAAGTCCTAAGCAATACTCACTGTGGCTTGATAACCAAAGAGAGGATCAG 2446 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 2399 AAGAACAGACTAAGTCCTAAACAGTACTCACTGTGGCTTGATAACCAAAGAGAGGATCAG 2458 Query 2447 ATCTGGAAAGGGATAAAAGCGACTTTGGATGATTATGCAGTGAAGATCAGATCGAGAGGG 2506 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2459 ATCTGGAAAGGGATAAAAGCAACTTTGGATGATTATGCAGTGAAGATCAGATCGAGAGGG 2518 Query 2507 GACAAAGAGTTTAGTCCAGTTTATCCTCTAATGCTTCAAATTGGTTCATCTTTAACAACA 2566 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2519 GACAAAGAGTTTAGTCCAGTTTATCCTCTAATGCTTCAAATTGGTTCATCTTTAACA-CA 2577 Query 2567 CAAGAAAACTTATAGGCTCCAAGTGCTTTGTTACCGAACCTATATTCTTCTATTGCCAAC 2626 | ||||||||||| ||| |||||||||||||||| | ||||||||||||||| ||| Sbjct 2578 -A-GAAAACTTATAAGCT----GTGCTTTGTTACCGAATCAATATTCTTCTATTGCGAAC 2631 Query 2627 TTTTATGTCTCATGGATTTTT 2647 |||| |||||||||||||||| Sbjct 2632 TTTTTTGTCTCATGGATTTTT 2652 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 131437390660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5