BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475922
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68010.2 | Symbols: HPR | hydroxypyruvate reductase | chr1:2... 2226 0.0
> AT1G68010.2 | Symbols: HPR | hydroxypyruvate reductase | chr1:25493196-25495783
FORWARD LENGTH=1449
Length=1449
Score = 2226 bits (1205), Expect = 0.0
Identities = 1360/1432 (95%), Gaps = 22/1432 (2%)
Strand=Plus/Plus
Query 1 AACATATGAACCACATCAAATTaaaaaaacaaaaaaCGTAGATAATGATCATGCAAAACC 60
||||||||||||||| | || |||| ||| |||| ||||||||||||||||||||||||
Sbjct 23 AACATATGAACCACA-CCAA--AAAAGAAC-AAAATCGTAGATAATGATCATGCAAAACC 78
Query 61 GACCGTTGGATCTTGTTTTCGATTTCAAACCACATAAATCCTAGTGACTGAGCTAAAAAA 120
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 79 GACCGTTGGATCTTACTTTCGATTTCAAACCACATAAATCTTAGTGACTGAGCTAAAAAA 138
Query 121 CTGAACtttttttAAAGGC---A---------TTTCCAAATTCTCACCACAG-A-AACAC 166
||||| |||||| |||||| | |||||| ||||||||||||| | ||| |
Sbjct 139 CTGAAATTTTTTAAAAGGCAAGACCTCCTCTGTTTCCATATTCTCACCACAGAAGAACTC 198
Query 167 TTGAAGATTTCTCTTTTCTCTGCCATGGCAAAACCGGTGGCCATTGAAGTGTATAATCCT 226
|||| | |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 199 TTGAGGCTTTCTCTTTTCTCTACCATGGCGAAACCGGTGTCCATTGAAGTGTATAATCCT 258
Query 227 AATGGGAAATACAGAGTTGTTAGCACAAAACCGATGCCGGGTACTCGCTGGATCAATCTT 286
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 259 AATGGGAAATACAGAGTTGTTAGCACAAAACCGATGCCTGGAACTCGCTGGATCAATCTC 318
Query 287 TTGGTAGACCAAGGTTGTCGCGTTGAGATATGTCATTTGAAGAAGACGATCTTGTCTGTA 346
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 319 TTGGTAGACCAAGGTTGTCGCGTTGAGATATGTCATTTGAAGAAGACAATCTTGTCTGTA 378
Query 347 GAAGATATCATTGATCTGATCGGAGACAAGTGTGATGGAGTCATTGGTCAGTTGACGGAA 406
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 379 GAAGATATCATTGATCTGATCGGAGACAAGTGTGATGGAGTCATCGGTCAGTTGACGGAA 438
Query 407 GATTGGGGAGAGACTCTGTTTTCAGCTCTGAGCAAAGCTGGAGGGAAAGCTTTCAGTAAC 466
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 439 GATTGGGGAGAGACTCTGTTCTCAGCTTTGAGCAAAGCTGGAGGGAAAGCTTTCAGTAAC 498
Query 467 ATGGCCGTTGGTTACAACAACGTTGATGTTGAAGCTGCCAATAAGTATGGAATTGCCGTC 526
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 499 ATGGCCGTTGGTTATAACAACGTTGATGTTGAAGCTGCCAATAAGTATGGAATTGCTGTC 558
Query 527 GGTAACACACCGGGAGTGTTGACTGAGACGACGGCCGAACTAGCTGCATCTCTTTCCCTG 586
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 559 GGTAACACTCCGGGAGTGTTGACTGAGACGACGGCTGAACTAGCTGCTTCTCTTTCCTTG 618
Query 587 GCTGCTGCAAGAAGGATTGTTGAAGCCGACGAATTCATGAGAGGTGGCTTGTACGAGGGA 646
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GCTGCTGCAAGAAGAATTGTTGAAGCCGACGAATTCATGAGAGGTGGCTTGTACGAGGGA 678
Query 647 TGGCTTCCTCATCTGTTTGTGGGGAACTTACTTAATGGACAAACTGTTGGAGTTATTGGG 706
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 679 TGGCTTCCTCATCTGTTTGTGGGGAACTTACTTAAAGGACAGACTGTTGGAGTTATTGGA 738
Query 707 GCTGGACGTATTGGATCTGCTTATGCTAGAATGATGGTGGAAGGGTTCAAGATGAATTTG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GCTGGACGTATTGGATCTGCTTATGCTAGAATGATGGTGGAAGGGTTCAAGATGAATTTG 798
Query 767 ATCTACTTTGATCTTTACCAATCTACACGTCTTGAGAAATTTGTGACAGCTTATGGACAA 826
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 799 ATCTACTTTGATCTTTACCAATCCACTCGTCTTGAGAAATTTGTGACAGCTTATGGACAG 858
Query 827 TTCCTGAAAGCAAACGGAGAACAACCTGTGACATGGAAACGAGCTTCGTCCATGGAGGAG 886
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TTCTTGAAAGCAAATGGAGAACAACCTGTGACATGGAAACGAGCTTCGTCCATGGAGGAG 918
Query 887 GTGCTACGCGAGGCTGATCTGATAAGTCTTCACCCGGTGCTGGACAAAACCACTTACCAT 946
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GTGCTGCGTGAGGCTGATCTGATAAGTCTTCACCCGGTGCTGGACAAAACCACTTACCAT 978
Query 947 CTTGTCAATAAGGAGAGGCTTGCCATGATGAAAAAGG---AAGCAATCCTTGTGAACTGC 1003
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 979 CTTGTCAACAAGGAGAGGCTTGCCATGATGAAAAAGGTGGAAGCAATCCTTGTGAACTGC 1038
Query 1004 AGCAGAGGTCCTGTCATCGATGAGGCAGCTCTGGTCGAACATCTCAAAGAGAACCCGATG 1063
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1039 AGCAGAGGTCCTGTGATCGATGAGGCAGCTTTGGTCGAACATCTCAAAGAGAACCCGATG 1098
Query 1064 TTCCGAGTTGGTCTCGATGTGTTTGAGGAAGAGCCATTCATGAAACCAGGGCTTGCTGAT 1123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTCCGAGTTGGTCTCGATGTGTTCGAGGAAGAGCCATTCATGAAACCAGGGCTTGCTGAT 1158
Query 1124 ATGAAAAACGCTATTGTTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGA 1183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 ACGAAAAACGCTATTGTTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGA 1218
Query 1184 ATGGCTACACTTGCAGCTCTCAACGTCCTCGGAAGAGTCAAAGGGTATCCGATTTGGCAT 1243
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1219 ATGGCTACGCTTGCAGCTCTCAACGTCCTCGGAAGAGTCAAAGGGTACCCGATTTGGCAT 1278
Query 1244 GACCCGAATCGAGTGGATCCATTCTTGAACGAAAACGCTTCACCGCCCAATGCCAGTCCA 1303
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GACCCGAACCGAGTCGATCCATTCTTGAACGAAAACGCTTCACCGCCCAATGCCAGTCCA 1338
Query 1304 AGCATCGTCAACTCAAAAGCCTTAGGATTGCCTGTTTCGAAGCTATGAGTTAAGTATGAA 1363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AGCATCGTCAACTCAAAGGCCTTAGGATTGCCTGTTTCGAAGCTATGAGTTAAGTATGAA 1398
Query 1364 GAAGGGGAGATTTGGAAGAATCGTTTTAAGTGAATATATGATGGTGTCAAGT 1415
|||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1399 GAAGGGGAGATTTGGAAGAATCCTTTTA-GTGAATATATGATGGTGTCAAGT 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77961446385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5