BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475925
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67980.1 | Symbols: CCOAMT | caffeoyl-CoA 3-O-methyltransfer... 1181 0.0
AT1G67990.1 | Symbols: ATTSM1, TSM1 | S-adenosyl-L-methionine-d... 619 1e-176
> AT1G67980.1 | Symbols: CCOAMT | caffeoyl-CoA 3-O-methyltransferase
| chr1:25487714-25489231 FORWARD LENGTH=1006
Length=1006
Score = 1181 bits (639), Expect = 0.0
Identities = 828/912 (91%), Gaps = 41/912 (4%)
Strand=Plus/Plus
Query 4 CATGGCCAATGAAATACCTTCCAAAGGGATCCTCAAGAGCGAAGCTCTAAAACAGTACAT 63
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 10 CATGGCCAATGAAATTCCTACCAAAGGGATTCTCAAGAGCGAAGCTCTAAAACAGTACAT 69
Query 64 CATGGAAACGTCAGCGTATCCAAGAGAGCATGGATTGCTCAAGGAACTTCGACAAGCTAC 123
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 70 CATGGAAACGTCAGCGTATCCAAGAGAGCATGAATTGCTCAAGGAACTTCGAAAAGCTAC 129
Query 124 TGTCCAAAAATACGGAAATTTAAGTGAGATGGAGGTTCCGGTTGATGAGGGTCATTTTCT 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 130 TGTCCAAAAATACGGAAATTTAAGCGAGATGGAGGTTCCGGTTGATGAGGGTCATTTCCT 189
Query 184 ATCGATGCTTGTAAAGATAATGAATGCGAAAAACACTCTCGA-ACTCGGTGTTTTCACCG 242
|||||||||||||||||| |||||||||||||||||| |||| | |||||||||||||||
Sbjct 190 ATCGATGCTTGTAAAGATCATGAATGCGAAAAACACTATCGAGA-TCGGTGTTTTCACCG 248
Query 243 GCTACTCACTACTCACTACAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACCGCGATAG 302
| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 249 GTTACTCGCTTCTCACTACAGCTCTTGCTTTACCTGAAGATGGCCGTATTACCGCGATAG 308
Query 303 ACATTGATAAAGAAGCTTACGAAGTTGGACTAGAGTTTATCAAGAAGGCTGGTGTTGATC 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 309 ACATTGATAAAGAAGCTTACGAAGTTGGACTAGAGTTTATTAAGAAGGCTGGTGTTGATC 368
Query 363 ACAAGATTAATTTTATCCATTCCGATGGTCTTAAAGCCTTAGACCAATTGGTGAACGACA 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 369 ACAAGATTAATTTTATCCATTCCGATGGTCTTAAGGCCTTAGACCAATTGGTGAACGACA 428
Query 423 AATCTGAGTTTGATTTTGCATTTGCGGATGCTGACAAGTCAAACTATGTCAACTTCCATG 482
||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 429 AATGTGAGTTTGATTTTGCATTTGCGGATGCTGACAAATCAAGCTACGTCAACTTCCATG 488
Query 483 AGAGGCTTCTAAAACTGGTGAAGGTTGGAGGAATCATTGCGTTCGACAACACCTTGTGGT 542
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 489 AGAGGCTTCTAAAATTGGTGAAGGTTGGGGGAATCATTGCGTTCGACAACACCTTGTGGT 548
Query 543 TTGGTTTTGTGGCTGAGGATGAAGAGGGAGTTCCAGATCATATGAGGGAATATAGAGCAG 602
||||||||||||| ||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 549 TTGGTTTTGTGGCGGAGGATGAAGATGGAGTTCCGGAGCATATGAGAGAATATAGAGCAG 608
Query 603 CTCTTATAGAGTTCAATAAGAAATTGGCTTTGGATCCTCGCGTCGAGGTCTCTCAGATTT 662
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 609 CTCTTATAGAATTCAATAAGAAATTGGCTTTGGATCCCCGAGTCGAGGTCTCTCAGATTT 668
Query 663 CCATTGGAGATGGTGTCACGCTCTGCAGACGTCTTGTATGATCAAAA--C-ACT--A--- 714
|||||||||||||| |||||||||| ||||||||||| ||||||||| | ||| |
Sbjct 669 CCATTGGAGATGGTATCACGCTCTGTAGACGTCTTGTTTGATCAAAAGACTACTTGAAGA 728
Query 715 ---C-T--CA-AA-----GTTGGAGAGTTTGGAATAAAAGTATTAGATGCTAT-AATAAT 761
| | || || || |||||||||||||||||||| ||||||| | | |||||
Sbjct 729 GTACGTAGCAGAACCAAAGTCGGAGAGTTTGGAATAAAAGTGTTAGATGGT-TCAATAAC 787
Query 762 GACTTCGTCTTTTGT-A-A--T--G---GT---G-TGT-TT-GATTGATGATCACTCTTC 806
||||||||||||||| | | | | || | ||| || |||||||| ||||||||
Sbjct 788 GACTTCGTCTTTTGTCACAACTTTGCTTGTAATGGTGTGTTTGATTGATGCTCACTCTTT 847
Query 807 ATCTTCTTTCTATGTCGTGGTTTTGTCGATGTTGCTCTGTCTCACGCAACAAAACTATTA 866
||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 848 ATCTTCTTTCTATGTTGTGGTTTCGTCGATGTTGTTCTGTCTG--GCAACAAAACTATTA 905
Query 867 GTTCACTAAATT 878
|| |||||||||
Sbjct 906 GTACACTAAATT 917
> AT1G67990.1 | Symbols: ATTSM1, TSM1 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr1:25489455-25490867
FORWARD LENGTH=859
Length=859
Score = 619 bits (335), Expect = 1e-176
Identities = 581/700 (83%), Gaps = 16/700 (2%)
Strand=Plus/Plus
Query 18 TACCTTCCAAAGGGATCCTCAAGAGCGAAGCTCTAAAACAGTACATCATGGAAACGTCAG 77
||||| |||||| || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 53 TACCTGACAAAGGCATTCTCAAGAGCGAGGCTCTAAAACAGTACATCATGGAAACAACAG 112
Query 78 CGTATCCAAGAGAGCATGGATTGCTCAAGGAACTTCGACAAGCTACTGTCCAAAAATACG 137
||||||||||||| || | |||||| || ||||||||| ||||||| |||| | ||| |
Sbjct 113 CGTATCCAAGAGAACACGAATTGCTTAAAGAACTTCGAGAAGCTACAATCCAGAGATATG 172
Query 138 GAAATTTAAGTGAGAT-GGAGGTTCCGGTTGATGAGGGTC-ATTTTCTATCGATGCTTGT 195
|||||||||| ||||| ||| |||||||||||||| ||| ||||| |||||||||||||
Sbjct 173 GAAATTTAAGCGAGATGGGA-GTTCCGGTTGATGAAAGTCTATTTT-TATCGATGCTTGT 230
Query 196 AAAGATAATGAATGCGAAAAACACTCTCGA-ACTCGGTGTTTTCACCGGCTACTCACTAC 254
|||||| || || |||||||||||| |||| | ||||||| |||||||| ||||||||
Sbjct 231 AAAGATCATCAACGCGAAAAACACTATCGAGA-TCGGTGTGTTCACCGGTTACTCACTTT 289
Query 255 TCACTACAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACCGCGATAGACATTGATAAAG 314
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 290 TCACCGTAGCTCTTGCTTTGCCTGAAGATGGCCGTATTACTGCGATAGACATTGATCAAG 349
Query 315 AAGCTTACGAAGTTGG-ACTAGAGTTTATCAAGAAGGCTGGTGTTGATCACAAGATTAAT 373
|| |||| || |||| |||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 350 CAGGTTAC-AATTTGGGACTAGAGTTTATGAAGAAAGCAGGTGTTGATCACAAGATCAAT 408
Query 374 TTTATCCATTCCGATGGTCTTAAAGCCTTAGACCAATTGGTGAACG---ACAAATCT-GA 429
|| || || || |||| | ||| || |||||||||||| |||||| | ||| | ||
Sbjct 409 TTCATTCAATCTGATGCTGTTAGAGGCTTAGACCAATTATTGAACGGGGAGAAA-CAAGA 467
Query 430 GTTTGATTTTGCATTTGCGGATGCTGACAAGTCAAACTATGTCAACTTCCATGAGAGGCT 489
|| |||||||||||||| ||||||||||||| | ||||| || |||||| ||||| |||
Sbjct 468 GTATGATTTTGCATTTGTGGATGCTGACAAGACGAACTACGTTTACTTCCTTGAGAAGCT 527
Query 490 TCTAAAACTGGTGAAGGTTGGAGGAATCATTGCGTTCGACAACACCTTGTGGTTTGGTTT 549
|| || | ||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 528 CCTTAAGTTAGTGAAGGTTGGAGGAATCATTGCCTTCGACAACACTTTATGGTTTGGTAC 587
Query 550 TGTGGCTGAGGATGAAGAGGGAGTTCCAGATCATATGAGGGAATATAGAGCAG-CTCTTA 608
| | | || | ||| | | |||||||| |||||||| | ||||||| || | |||
Sbjct 588 TCTAATTCAGAAGGAAAACGAAGTTCCAGGCCATATGAGAGCTTATAGAG-AGGCACTTT 646
Query 609 TAGAGTTCAATAAGAAATTGGCTTTGGATCCTCGCGTCGAGGTCTCTCAGATTTCCATTG 668
||||||||||||||| ||||||| ||||||||| ||||| || |||| || ||||| |
Sbjct 647 TAGAGTTCAATAAGATATTGGCTCGGGATCCTCGAGTCGAAATCGCTCAAATATCCATCG 706
Query 669 GAGATGGTGTCACGCTCTGCAGACGTCTTGTATGATCAAA 708
|||||||| ||||||| || ||||||||| |||||| |||
Sbjct 707 GAGATGGTCTCACGCTATGTAGACGTCTTATATGAT-AAA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42849727391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5