BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475928
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Membrane ... 3306 0.0
> AT1G67960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Membrane
protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast
hits to 428 proteins in 176 species: Archae - 0; Bacteria
- 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0;
Other Eukaryotes - 75 (source: NCBI BLink). | chr1:25480652-25484262
REVERSE LENGTH=2117
Length=2117
Score = 3306 bits (1790), Expect = 0.0
Identities = 1999/2096 (95%), Gaps = 30/2096 (1%)
Strand=Plus/Plus
Query 1 GGTTTCCGATTTCGTGAATCCAATTTTTGTTTGTATGTATTCGCTTCGTCTCTCCATTGT 60
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1 GGTTTTCGATTTCGTGAATCCAATTTTTGTGTGTATGTATTCGCTTCGTCTCTCCATTTT 60
Query 61 TCTTCCTCATACGTATACGTAACCCAAATGGCGATTAGATCCTCGGGAAGAAAACTATCG 120
||||| || ||||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCGTCTTACGTTTACGTAATCC-AATGGCGATTAGATCCTCGGGAAGAAAACTATCA 119
Query 121 TTTGAGATTCTCAGCCGAAGCAGCTCCTTTGAGAATGATGATACATCAATTCGCCGATCC 180
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGAGATTCTCAGCCAAAACAGCTCCTTTGAGAATGATGATACATCAATTCGCCGATCC 179
Query 181 AGCTCAGATCCAATCACCGGAAACG-ACGCTTCTGAATCACCTAGAGACTACGGGAAACG 239
|||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 180 AGCTCAGATCCAATTACCGGAAACGTA-GCTTCAGAATCACCTAGAGACTACGGGAAACG 238
Query 240 AAAGAGATCgaagaagaagaagaagaaCA-ACAACAAAGTCGAGACTATTCTAGAGAATG 298
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 239 AAAGAGATCGAAGAAGAAGAAGAAGAA-AGTGAACCAAGTCGAGACTATTCTAGAGAATG 297
Query 299 GTGATTCTCATTCAACGATCGTCA-C----C----GGTGACTTTGGAGAGACTACAACGA 349
| |||||||||||||||||| ||| | | ||||| |||||||||||||||||||
Sbjct 298 GAGATTCTCATTCAACGATCATCACCGGTTCAAGTGGTGATTTTGGAGAGACTACAACGA 357
Query 350 TGTTTGAGAACAGATTGAATTACTATGGCggtggtggtggtggtagca---gtggtggtt 406
|||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||
Sbjct 358 TGTTTGAGAACAGATTGAATTACTATGGTGGTGGTGGTAGTGGTAGTAGTGGTGGTGGTT 417
Query 407 gtgtggtgACGCTATTAGATGGACAAACTGTTCATCATAATGGGTTCAATTTTGGTGAGT 466
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 GTGTCGTGACTCTATTAGATGGGCAAACTGTTCATCATAATGGGTTCAATTTTGGTGAGT 477
Query 467 TAAGGCAGAGGAATGTTAATGGGAGTGTTGATGGGAGTAATGATGAGCGGTGGTCTGATA 526
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 TAAGGCAGAGGAATGTTAATGGTAGTGTTGATGGGAGTAATGATGAGCGGTGGTCTGATA 537
Query 527 CTATGAGTTCTGATAAGAAGTTATATGTGGAGGAGACTAGTGTGGAGCTAAGCTCTTCTG 586
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 538 CTTTGAGTTCTGATAAGAAGTTATATATGGAGGAGACTAGTGTGGAGCTAAGCCCTTCTG 597
Query 587 AGAATCCACCGTTTCAAGAAGTGCAGCATCAGTTTCCAAGAAGTGAGGTTAATGGGAATG 646
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 AGAATCCACCGTTTCAAGAAGTGCAGCATCAGTTTCCAAGAAGTGAGATTAATGGGAATG 657
Query 647 TGGTGAGGAGATTAGATACAGAAGCTTCTTTGGATTGGAAACAGCTTGTGGCTGATGATC 706
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 658 TGGTTAGGAGATTAGATACAGAAGCTTCTTTGGATTGGAAACAGCTTGTGGCTGATGACC 717
Query 707 CTGATTTTCTTTCTGCTGAGACGAGGTCACCTATGAAATACTTTATGGAGGAAATTTATG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTGATTTTCTTTCTGCTGAGACGAGGTCACCTATGAAATACTTTATGGAGGAAATTTATG 777
Query 767 GTGGGATTTCATTACGGAGCACAACGACTCCTGGGAATGATATAGAACGCGAAAGGATAT 826
||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 778 GTGGGATCTCATTACGGAGCACAACGACTCCTGGGAATGATATCGAGCGCGAAAGAATAT 837
Query 827 ATGATACGATCTTCCGTTTGCCTTGGCGATGTGAAGTGCTTATAGATACTGGCTTTTTTG 886
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGATACAATCTTCCGTTTGCCATGGCGATGTGAAGTGCTTATAGATACTGGCTTTTTTG 897
Query 887 TCTGCGTCAACTCATTTCTGTCATTGTTGACAGTCATGCCAATAAGAGTCCTGCTGATAT 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCTGCGTCAACTCATTTCTGTCATTGTTGACAGTCATGCCAATAAGAGTCCTGCTGATAT 957
Query 947 TTATGGATGCAATTAAGAACAGGCAGTTCAGGAGGCCCTCCT-CATCGGAGTTTTCTGAT 1005
||||||||||| ||||||||||||||||||||||||||| || |||||||| | ||||||
Sbjct 958 TTATGGATGCATTTAAGAACAGGCAGTTCAGGAGGCCCT-CTGCATCGGAGCTGTCTGAT 1016
Query 1006 CTTGCTTGTTTTCTAGTTTTGGCTACTGGTACCATTCTTCTCGGGAGAACAGATATCAGC 1065
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTGGCTTGTTTTCTAGTTTTGGCCACTGGTACCATTCTTCTCGGGAGAACAGATATCAGC 1076
Query 1066 CTAATTTACCACATGATTCGTGGTCAAAGTACCATAAAACTCTATGTGGTTTATAATATC 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTAATTTACCACATGATTCGTGGTCAAAGTACCATAAAACTCTATGTGGTTTATAATATC 1136
Query 1126 TTAGAGATATTTGATAGACTATGTCAAAGTTTTTGTGGAGATGTATTCGGGGCCCTATTT 1185
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1137 TTAGAGATATTTGATAGACTCTGTCAAAGTTTTTGTGGAGATGTATTTGGAGCCCTATTC 1196
Query 1186 AGTTCTGCAAAGGGACTGGCGATTTCCCCTCCTGAGAAATTGAGATTTTCGACTTGGAGA 1245
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1197 AGTTCTGCAAAGGGACTGTCGATTTCTCCTCCTGAGAAACTGAGATTTTCGACTTGGAGA 1256
Query 1246 TTTGTTTCTGACCTAGCATTAACTATGGCTGCCTCAATTCTCCATTCATTCATTTTATTA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTTGTTTCTGACCTAGCATTAACTATGGCTGCCTCAATTCTCCATTCATTCATTTTATTA 1316
Query 1306 GCTCAGGCAATTACGTTGTCAACTTGTATTGTTGCTCACAACAATGCCTTGTTGGCCCTT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GCTCAGGCAATTACGTTGTCAACTTGTATTGTTGCTCACAACAATGCCTTGTTGGCCCTT 1376
Query 1366 CTGGTGTCAAATAACTTTGCTGAGATCAAGAGCAGTGTCTTTAAGCGTTTCAGCAAGGAC 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTGGTGTCAAATAACTTTGCTGAGATCAAGAGCAGTGTCTTTAAGCGTTTCAGCAAGGAC 1436
Query 1426 AACATTCATGGTCTAGTATATGCGGATTCAATAGAGAGATTTCACATATCGGCCTTCTTG 1485
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 AACATTCATGGTCTAGTATATGCGGATTCAATAGAGAGATTCCACATATCGGCCTTCTTG 1496
Query 1486 GTGTCTGTTTTGGCTCAAAATATCCTCGAGTCTGAAGGTGCATGGTTTGGAAACTTT-AT 1544
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 1497 GTGTCAGTTTTGGCTCAAAATATTCTCGAGTCTGAAGGTGCATGGTTTGGAAA-TTTCAT 1555
Query 1545 CTACAATGCTACTACGGTCTTCTTCTGTGAGATGATGATAGACATCATCAAGCATTCATT 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CTACAATGCTACTACGGTCTTCTTCTGTGAGATGATGATAGACATCATCAAGCATTCATT 1615
Query 1605 TCTTGCCAAGTTCAATGACATCAAACCTATAGCGTACTCTGAGTTTCTTCAAGCCCTCTG 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TCTTGCCAAGTTCAATGACATCAAACCTATAGCGTACTCTGAGTTTCTTCAAGCCCTCTG 1675
Query 1665 CGAGCAGACTTTGAACATTCGCCCGGAAGATAGAAAGACAAATCTCACCTTTGTTCCCCT 1724
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CGAGCAGACTTTGAACATTCGTCCGGAAGATAGAAAGACAAATCTCACCTTTGTTCCCCT 1735
Query 1725 TGCACCCGCTTGTGTGGTGATCCGAGTACTGACTCCAGTATACGCAGCACACTTGCCGTA 1784
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1736 TGCACCTGCTTGTGTGGTGATCCGAGTACTGACACCAGTATACGCAGCACACTTGCCATA 1795
Query 1785 CAGTCCACTCCCATGGAGAATGTTGTGGATGGTCATCTTATTCGTCATAACATATATAAT 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CAGTCCACTCCCATGGAGAATGTTGTGGATGGTCATCTTATTCGTCATAACATATATAAT 1855
Query 1845 GCTCACAAGCCTCAAAGTTCTGATCGGCATGGGACTTAGGAAACATGCAACTTGGTACAT 1904
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 1856 GCTCACAAGCCTCAAAGTTCTCATCGGCATGGGACTGAGAAAACATGCAACTTGGTATAT 1915
Query 1905 TAATAGATGCCGAAGAAGAAACTCCTCCCATCTCCACAATGATTAGGCTTGGAATGAAGA 1964
|||| |||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 1916 TAATCGATGCCGAAGAAGAAACTCCTCCCATCTCCACAATGATTAGGCT-G-AA-GATCA 1972
Query 1965 TCATCTTCGTGATCTTATAATACGTGTTTAA-TATTCGATGAAGCAATTTT-GTTGTGGT 2022
|| | || |||||||||| |||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1973 TCTT-TT-GTGATCTTATTATACGTGTTTAAATATTCGATGAAGCGATTTTTGTTGTGGT 2030
Query 2023 TAGGCATACATACATATGTACAAAGAAAGAGAGACCTCATGGATCATTTGGCAAAA 2078
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2031 TAGGCATATATACATATGTACAAAGAAAGAGA--CCTCATGGATCATTTGGCAAAA 2084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103011518340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5