BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475937 Length=1289 Score E Sequences producing significant alignments: (Bits) Value AT1G68190.1 | Symbols: | B-box zinc finger family protein | ch... 1829 0.0 > AT1G68190.1 | Symbols: | B-box zinc finger family protein | chr1:25559246-25561212 FORWARD LENGTH=1340 Length=1340 Score = 1829 bits (990), Expect = 0.0 Identities = 1136/1207 (94%), Gaps = 7/1207 (1%) Strand=Plus/Plus Query 1 AAGCTTTTGTCACCAATCTCTGAtttttttAGTTCTCTCATCGGGACGAATCTTTTATAT 60 |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 4 AAGCTTTTGTCACCAATCTCTGATCTTTTTAGTTCTCTTATCGGGAGGAATCTTTTATAT 63 Query 61 GTTATG---GATAATAATTGAGAAAATGGAAAGAGTATGTGAGTTTTGTAAAGCGTTTAG 117 |||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 64 GTTATGTATAATAATAATTGAGAATATGGAAAGAGTATGTGAGTTTTGTAAAGCGTATAG 123 Query 118 AGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTTGTTTAACATGTGATGCTAAGGT 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 124 AGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTTGTTTAACATGTGATGCAAAGGT 183 Query 178 TCATTCAGCTAATTCGCTTTCGGGACGACATTTACGTACTGTTTTATGTGATTCTTGTAA 237 ||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| Sbjct 184 TCATTCAGCTAATTCACTCTCGGGACGGCATTTACGTACGGTTTTATGTGATTCTTGTAA 243 Query 238 GAATCAGCCTTGTGTTGTTCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAA 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 GAATCAGCCTTGTGTTGTTCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAA 303 Query 298 CGATAAGTTTCATGGTGGTGGTTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTATAC 357 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 304 TGATAAGTTTCATGGTGGTGGCTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTATAC 363 Query 358 GGGTTGTCCTGCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCAAGTTATGGATGATGA 417 |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 364 GGGTTGTCCTCCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCGAGTTATGGATGACGA 423 Query 418 TGATGATGTTTCGTTAGAGCAATGTTTTCGAATGGTTAAACCGAAGGTGCAAAGAGAAGG 477 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 424 TGATGATGTTTCGTTAGAGCAATCTTTTCGAATGGTTAAACCTAAGGTGCAAAGAGAAGG 483 Query 478 TGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTGAGAGAAGAGAATGG 537 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 484 TGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTCAGGGAAGAGAATGG 543 Query 538 TAGTTCTTC-TGTGACAGAACAAGCTGATCCATCTCCATTGGAGCTTCCGAAGAAATCTG 596 ||||||||| | ||||||||| || |||||||||||||||||||||||| |||||| | | Sbjct 544 TAGTTCTTCCT-TGACAGAACGAGGTGATCCATCTCCATTGGAGCTTCCTAAGAAACCCG 602 Query 597 AAGAACGGTTAATTGATCTTCCGCAGACCGGAAAAGAGCTGATTGTTGATTTTTCCCACT 656 |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 603 AAGAACAGTTAATCGATCTTCCGCAGACCGGAAAAGAGCTGGTTGTTGATTTTTCACACT 662 Query 657 TGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGCCCATATAATAAGA 716 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 663 TGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGTCCATACAATAAGA 722 Query 717 ACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAGTTTGTGAAGATACAATCTGCA 776 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 723 ACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAGTATGTGAAGATACAATCTGCA 782 Query 777 GTGATGACGACTTCCAAATACCGGACATCGATCTCACTTTCCGAAACTTTGAAGAGGAAT 836 |||| || |||||||||||||| ||||| |||||||||||||| |||||||||||| ||| Sbjct 783 GTGACGATGACTTCCAAATACCTGACATTGATCTCACTTTCCGGAACTTTGAAGAGCAAT 842 Query 837 TTGGAGCTGATCCAGAGCCAACTGCAGACAATAAGAACGTCTTCTTTGTTTCTTCCCTAG 896 ||||||||||||| ||||||| |||||| | ||| ||||| ||||||||||||||||| | Sbjct 843 TTGGAGCTGATCCTGAGCCAATTGCAGATAGTAACAACGTGTTCTTTGTTTCTTCCCTTG 902 Query 897 ACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAACCCCATATTTGCACCTA 956 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 903 ACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAATCCCATATTTGCACCTA 962 Query 957 AACCCGCTTCATCATCCATTTCATTCTCAAGCAGCGAAACCGATAACCCTTACAATCACA 1016 |||| ||||||||| | || |||||||||||||| ||||||||||||||||| | |||| Sbjct 963 AACCAGCTTCATCAACTATCTCATTCTCAAGCAGTGAAACCGATAACCCTTATAGTCACT 1022 Query 1017 CAGAGGAAGTAATCTCATTTTGTTCC-CCTCTCTCTAACAATGCACGTCAAAAGGCCATC 1075 ||||||||||||||||||||||| || || |||||||||||| |||||||||||| |||| Sbjct 1023 CAGAGGAAGTAATCTCATTTTGTCCCTCC-CTCTCTAACAATACACGTCAAAAGGTCATC 1081 Query 1076 TCAAGGCTCAAGGAAAAGAAGAGAGCACGAGTGGAGGAGAAACAAGCTTAATATGGTCCC 1135 ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1082 ACAAGGCTCAAGGAGAAGAAGAGAGCAAGAGTGGAGGAGAAAAAAGCTTAATATGGTCCC 1141 Query 1136 AAGAAAATGGCAGAGTAACAAAATTTCTTGCATTGCCTTTGTACATAAGACACTAATCTA 1195 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1142 AAGAAAATGGCAGAGTAACACAATTTCTTGCAATGCCTTTGTACATAAGACACTAATCTA 1201 Query 1196 CCACTTC 1202 || |||| Sbjct 1202 CCTCTTC 1208 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63403288335 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5