BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475948
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68300.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 963 0.0
> AT1G68300.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr1:25598331-25599357 REVERSE LENGTH=766
Length=766
Score = 963 bits (521), Expect = 0.0
Identities = 645/702 (92%), Gaps = 20/702 (3%)
Strand=Plus/Plus
Query 1 AATCGACACGTCATCATGCTGACTTTTCTCTATGAAGAGAAAATCAAATCACCAAGTCAT 60
||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||
Sbjct 10 AATCGACACGTCATCATTCTGACTTTTCTCAAAGAAGAG-AAATCAAATCACCAAGTCAT 68
Query 61 CGGAGCGATCACA-ACGGAGAAGAAAACCATGGCGGAAGAAGAGAAAAGCTTGAAGAAGC 119
||||||||||||| | | |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 69 CGGAGCGATCACAGA-GAAGAAGAAAACCATGGCGGAAGAAGAGAAAAGCGTGATGAAGC 127
Query 120 AAGTGATGGTGGCGATTGATGAAAGCGAATGTAGTAAACGCGCTCTTCAATGGACGCTTG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 128 AAGTGATGGTGGCGATTGATGAAAGCGAATGTAGTAAACGCGCTCTTCAATGGACGCTCG 187
Query 180 TCTATCTCAAAGATAGCCTCGCCGATTCCGATATTATCCTCTTCACTGCTCAACCTCCA- 238
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 188 TGTATCTCAAAGATAGCCTCGCCGATTCCGACATCATCCTCTTCACTGCTCAACCTC-AT 246
Query 239 CTCGATCTCAGCTGTGTTTATGCTTCCTCCTATGGCGCCGCTCCGATTGAGCTGATAAAC 298
|| ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 247 CTTGATCTCAGCTGCGTCTATGCTTCCTCTTATGGCGCCGCTCCGATTGAGCTTATAAAC 306
Query 299 TCAATGCAAGAGAATTATAGGAACGCTGGATTGAATCGGCTTGAGGAAGGGACCAAAATT 358
||| ||||||||| | ||| |||||||||||||||||| ||||| ||||| |||||||||
Sbjct 307 TCATTGCAAGAGAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATT 366
Query 359 TGTGCTGAGATTGGGGTAACTCCAAGAAAGGTTTTGGAATTTGGAAATCCTAAAGAAGCC 418
|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 367 TGTGCTGAGACTGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCG 426
Query 419 ATATGTGAAGCTGCTGAGAAGCTTGGTGTTAATATGCTTGTAGTTGGAAGCCATGGTAAA 478
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 427 ATATGTGAAGCTGCTGAGAAGCTTGGTGTTGATATGCTTGTGGTTGGAAGCCATGGTAAA 486
Query 479 GGAGCATTACAAAGGACTTTCCTTGGGAGTGTTAGCAATTACTGTGTTAACAATGCTAAG 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 487 GGAGCATTACAAAGGACTTTCCTTGGAAGTGTTAGCAATTACTGTGTTAACAATGCTAAG 546
Query 539 TGCCCAGTTCTTGTGGTGAGGACAAAAGCTTGAAGACCTCTTCTCATTA-----T-CGAG 592
|||||||||||||||||||| |||||||||||||||||||||||||| | | ||||
Sbjct 547 TGCCCAGTTCTTGTGGTGAGAACAAAAGCTTGAAGACCTCTTCTCATGAAAGAGTTCGAG 606
Query 593 AACCCTGGCTTGATGTGTGTGTTGTAAAGTAAACATATTGCTGATAATAATGCTCTGCTT 652
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 607 AACCCTGGCTTGATGTGTGTGT-GTT--GTAAACATATTG---ATAATAATGCTCTGCTT 660
Query 653 GATTAATACTGTTTTTAGAAGATACTTTGTGAGTACACATAA 694
| ||| || ||||| ||||| |||||||||||| ||||||
Sbjct 661 GGTTACTATTGTTT---GAAGAAACTTTGTGAGTAAACATAA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5