BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475950
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68310.1 | Symbols: AE7 | Protein of unknown function (DUF59... 1048 0.0
> AT1G68310.1 | Symbols: AE7 | Protein of unknown function (DUF59)
| chr1:25599491-25601463 FORWARD LENGTH=755
Length=755
Score = 1048 bits (567), Expect = 0.0
Identities = 679/729 (93%), Gaps = 24/729 (3%)
Strand=Plus/Plus
Query 1 AAAATGGTAACTGGGTTGATTAACGAGAACCCAATCATTTACCCGAAGAAAGAGAGGCGT 60
||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 49 AAAATGGTATCTGGGTTGATTAATGAGAACCCTATCATTTACCCAAAGAAAGAGAGGCGT 108
Query 61 CTTCGAACTGATTCAAGCACTACCGATGAGTTTACACCAGAACCAATTGATCAACTTGAG 120
||||| |||||| |||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 109 CTTCGTACTGATACAAGCATTACTGATGAGCTTACACCAGAACCAATTGATCAACTTGAG 168
Query 121 ATTTTTGATATCCTTAATTTTGGGAATTGCAATCCTTTTGTTGTAGATATCAAAGATCCA 180
||||||||||||| ||| || | || | | ||||||||||||||
Sbjct 169 ATTTTTGATATCC-----TTT----CTT-C-AT-C---------AAATATCAAAGATCCA 207
Query 181 GAGCATCCTAATACTCTGGAAGATCTCAGAGTAGTTACGGAAGACTCAGTTGAAGTGGAT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 208 GAGCATCCTAATACTCTGGAAGATCTCAGAGTAGTTACAGAAGACTCAGTTGAAGTGGAT 267
Query 241 GATGAGAACAGTTATGTTAGGGTTACGTTCACTCCAACTGTGGAACATTGTAGCATGGCA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 268 GATGAGAACAGTTATGTTAGGGTTACGTTCACTCCAACTGTCGAACATTGTAGCATGGCA 327
Query 301 ACCGTTATCGGTCTTTGTGTCCGCGTGAAACTTCTGCGAAGCCTTCCTTCTCGATACAAG 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 328 ACCGTTATCGGTCTTTGTGTCCGTGTGAAACTTCTACGAAGCCTTCCTTCTCGATACAAG 387
Query 361 ATTGATATACGGGTAGCGCCTGGTTCTCATGCAACAGAGGATGCATTGAATAAACAACTA 420
||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 388 ATTGATATAAGGGTAGCACCTGGTTCTCATGCAACAGAAGATGCATTGAATAAACAACTA 447
Query 421 AACGATAAAGAACGTGTGGCGGCTGCACTAGAGAATCCAAACCTTGTGGAGATGGTCGAT 480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 448 AACGATAAAGAACGTGTGGCGGCTGCACTAGAGAATCCAAACCTCGTGGAGATGGTTGAT 507
Query 481 GAATGCCTGCCATCAGAAGAGTGAATTGTTTTTATTTTCTTGTGAGCAAGTAATTTACAC 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 508 GAATGCCTGCCATCAGAAGAGTGAATTGCTTTTATTTTCTTGTGAGCAAGTAATTTACAC 567
Query 541 AAGCCTGGTGGTCTCAGTTTACACTAACAATACATGTCTCTGTTTTATTTGCAAAGATTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 568 AAGCCTGGTGGTCTCAGTTTACACTATCAATACATGTCTCTGTTTTATTTGCAAAGATTT 627
Query 601 TGATCCATCACATCGACTAGGACT-GCATTGTAATTCTTACTCTGATTTCAAGTTTGTTC 659
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 628 TGATCCATCACATCGACTAGGACTTGCATTGTAATACTTACTCTGATTTCAAGTTTGTTC 687
Query 660 TCAATCATTTCAATAAAGTCTCAATA-ACAATTTCTTTTTACTAAAAGTTGAAGTGTCAT 718
|||||||||||||||||||||||| | |||| ||||||||| |||||||||| |||||||
Sbjct 688 TCAATCATTTCAATAAAGTCTCAA-ACACAAGTTCTTTTTAATAAAAGTTGACGTGTCAT 746
Query 719 TTCGATTTC 727
|||||||||
Sbjct 747 TTCGATTTC 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5