BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475964
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1842 0.0
> AT1G68440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G25400.2);
Has 86 Blast hits to 86 proteins in 29 species: Archae - 0;
Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses
- 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr1:25658033-25659273
FORWARD LENGTH=1241
Length=1241
Score = 1842 bits (997), Expect = 0.0
Identities = 1166/1242 (94%), Gaps = 33/1242 (3%)
Strand=Plus/Plus
Query 1 tttttt-tCTCTTTCTCAT---AACaaaaaaa-aaaaaaaaaCCCTAATTAGTTTTCTTC 55
|||||| |||||||||||| |||||||||| ||||||||| ||||||||||||| |||
Sbjct 10 TTTTTTCTCTCTTTCTCATAACAACAAAAAAACAAAAAAAAAACCTAATTAGTTTT-TTC 68
Query 56 TTCCTGCAGAGATTATGGAGGTACCGGTGATTAATAGAATAAGAGATTTCGAAGTTGGTA 115
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TTTCTGCAGAGATTATGGAGGTACCGGTGATTAATAGAATAAGAGATTTCGAAGTTGGTA 128
Query 116 TAAACTCGATTAATGATCCTTCGTTTCTTTCTCGATCTGTTGCTGTTTCCGGAATCGGAA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TAAACTCGATTAATGATCCTTCGTTTCTTTCTCGATCTGTTGCTGTTTCCGGAATCGGAA 188
Query 176 AGCTACACCAAGCTTATGGTTTTTGGAAATGGGGAGCTTTGATTATTGCATTTCTAGCTT 235
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 189 AGCTACACCAAGCTTATGGTTTTTGGAAATGGGGAGCTTTGATTATCGCATTTCTAGCTT 248
Query 236 ATTTCACAAACTTTGTTAGTAAACTCAACAGTTTAGTTGTTAGGTTAAGAAAAATAGATG 295
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 249 ATTTCACCAACTTTGTTAGTAAACTCAACAGTCTAGTTGTTAGGTTAAGAAAAATAGATG 308
Query 296 TCTCTGTTTCTTCTCCAACTCTTTTTGATGATTACGATAGCGATTCCGATGTTTCTTGTT 355
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCTCTGTTTCCTCTCCAACTCTTTTTGATGATTACGATAGCGATTCCGATGTTTCTTGTT 368
Query 356 CGTCTACCGTCTCATCtgacgatgaagaagacgaagaagatgaggatgatgatgaagatg 415
| ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 369 CCTCTACCGTCTCCTCTGACGATGAAAAAGACGAAGAAGATGAGGCTGATGATGAAGATG 428
Query 416 aggatgTTGACTCGATCTTTAATCGAAGACGAGTCAACGGAGGTTTCCGCGTGAGAGGAT 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 429 AGGATGTTGACTCGATCTTTAATCGAAGACGAGTCAACGGAGGTTTCCGCGTTAGAGGAT 488
Query 476 CTGATTATTATGATGATGATGATGGTCAGGGAGAAAATGGTAATTGCACATGGATGGGGC 535
|||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 489 CTGATTATTACGATGATGATGATGATCAGGGAGACAATGGTAATTGCACATGGATGGGGA 548
Query 536 GGCGATGTAGTGGTAGTTTTGGAGATTTGTTCTCGTGGCCTGATCTTGGTGGGATTGGTT 595
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 549 GGCGATATAGTGGTAGTTTTGGAGATTTGTTCTCATGGCCTGATCTTGGTGGGATTGGTT 608
Query 596 CGAGTGGAGTCGTGAAGCTTTGGGATCATTTAGATATTGATGGCGATGATGATGATCATG 655
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 609 CGAGTGGAGTCGTGAAGCTTTGGGATCATTTAGATATCGATGGCGATGAT------CATG 662
Query 656 AGAATGTTGTGGCCACGTTTCTCAAGAATTGTAGCTCGACCTCGTCTC--tttttttGG- 712
||||||||||||| |||||||||||||| | || ||| |||||||| | |||||||||
Sbjct 663 AGAATGTTGTGGCAACGTTTCTCAAGAACTATAACTCAACCTCGTCACCGTTTTTTTGGG 722
Query 713 CGGCGGAGAAGAAAGGTGTTGACGCCGTTAAAGTGAATGCGTGTGATCCACGCGCCGGTT 772
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 723 CGGCGGAGAAAAAAGGTGTTGACGCCGTTAAAGTGAAGGCGTGTGATCCACGCGCCGGTT 782
Query 773 TTCGGATGCCGGCTTTGCTTGCGGAGTGGAGGCAGCCGGGGCGGTTGTTAGGGAATATTA 832
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 783 TTCGGATGCCGGCTTTGCTCGCGGAGTGGAGGCAGCCGGGGCGGTTGTTAGGGAATATAA 842
Query 833 TCGGAGTTGATGCTGGTGGTGTGGAGAAAGTTTACGTCAGGGATGATGTTAGTGGAGAAA 892
||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 843 TCGGAGTTGATACCGGTGGTGTGGAGAAAGTATACGTCAGGGATGATGTTAGCGGAGAGA 902
Query 893 TAGCCGTGGGAGATTTGAGGAAGTTTAACGGTGTGTTGACGGACTTGACGGAATGTGAGG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TAGCCGTGGGAGATTTGAGGAAGTTTAACGGTGTGTTGACGGACTTGACGGAATGTGAGG 962
Query 953 CTGAGACTTGGTGGGACGCTGACGTCGTTATCTCGGGCTGACGGATTTGTTGACGAGAGA 1012
|||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct 963 CTGAGACTTGGTGGGACGCTGACGTCCTTATCTCGGGCTGATGGAATCCTTGACGAGAGA 1022
Query 1013 AGATATTGGTTGGGACGGTTTTGTCTTAAAGTTAAGAGGGACGGACGAAAGATTCAACGC 1072
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1023 AAATATTGGTTGGGACGGTTTTGTCTTAAAGTTAAGAGG-ACGGACGAAAGATTCAACGC 1081
Query 1073 -AAAA-G---TGTAAAAGA--A-TGAGAACGACGCAACATTTTGTAAATAATTTGTCTGT 1124
|||| | ||| ||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 1082 CAAAAAGAAGTGTTAAAGATTAATGAGAACGACGCAACGTTTTGTAAATAATTTGTCTGT 1141
Query 1125 TTGCTTCTCTGCGATTT--ATTTTAAAATTTTAGTTTTGATTAAATAAAAA-C--C-TCA 1178
||||||||||||||||| ||||||||||||||||||||||| |||||||| | | |||
Sbjct 1142 TTGCTTCTCTGCGATTTTTATTTTAAAATTTTAGTTTTGATTGAATAAAAATCAGCGTCA 1201
Query 1179 TATTAATAAA-GTGTTCGTGTGTGTTTGGTCGGTTACTAGTT 1219
||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1202 GATTAATAAAAGTGTT--TGTGTGTTTGGTCGGTTACTAGTT 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59889250185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5