BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475979 Length=2000 Score E Sequences producing significant alignments: (Bits) Value AT1G68570.1 | Symbols: | Major facilitator superfamily protein... 3175 0.0 AT1G68568.1 | Symbols: | other RNA | chr1:25746977-25747654 RE... 388 8e-107 > AT1G68570.1 | Symbols: | Major facilitator superfamily protein | chr1:25746736-25750275 FORWARD LENGTH=2031 Length=2031 Score = 3175 bits (1719), Expect = 0.0 Identities = 1910/2002 (95%), Gaps = 14/2002 (1%) Strand=Plus/Plus Query 1 CAACACTTACAAGTTTTACAACAAACTTAATATATAAAACATAACTAATTATTACAAGAA 60 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1 CAACACTTACAAGTTTTACAACAAACGTAATATATAAAACATTACTAATTATTACAAGAA 60 Query 61 ACACTCAGAAACATCATGGAAGAGCAAAGCAAGAACAAGATCAGTGAAGAAGAAAAACAA 120 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACAATCAGAAACATCATGGAGGAGCAAAGCAAGAACAAGATCAGTGAAGAAGAAAAACAA 120 Query 121 CTTCATGGGAGACCAAATCGACCAAAGGGAGGATTAATTACCATGCCCTTCATCTTCGGT 180 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 CTCCATGGGAGACCAAATCGACCAAAGGGAGGATTAATTACCATGCCCTTCATCTTC-G- 178 Query 181 ATGAACGAGATATGTGAAAAATTAGCGGTGGTTGGGTTTCACGCAAACATGATAAGTTAC 240 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 179 -CGAACGAGATATGTGAAAAATTAGCGGTGGTGGGGTTTCACGCAAACATGATAAGTTAC 237 Query 241 TTAACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTAACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCC 297 Query 301 GGAACTTCGAGTCTCACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGG 360 || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GGGACATCGAGTCTTACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGA 357 Query 361 TTCTGGACCATCACGTTTGCTTCCATCATCTACCAAGTCGGGATGACTTTGCTTACGATA 420 || ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 358 TTTTGGACCATCACTTTTGCTTCCATCATCTACCAAATCGGGATGACGTTGCTTACGATA 417 Query 421 TCGGCAATAATACCAACGTTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGTAGTA 480 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TCGGCAATAATACCAACGCTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGTAGTA 477 Query 481 GCTGACACAGCACAATTGAGTATA-TTATACGTAGCTCTTCTTCTTGGAGCTCTCGGGTC 539 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 478 GCTGACACAGCACAATTGAGTATACTT-TACGTAGCTCTTCTTCTTGGAGCTCTCGGGTC 536 Query 540 GGGTGGGATCCGGCCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGGATCC 599 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GGGTGGGATCCGACCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGGATCC 596 Query 600 TAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTACTACTTTTGCATGGGAGCAGC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 597 TAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTACTACTTTTGCATGGGTGCAGC 656 Query 660 AGTTTTACTAGCGGTGACGGTTCTTGTGTGGATCCAAGATAACGTTGGGTGGGGTCTAGG 719 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 AGTTTTACTGGCGGTGACGGTTCTTGTGTGGATCCAAGATAACGTTGGGTGGGGTCTAGG 716 Query 720 TTTAGGCATCCCGACAGTAGCTATGTTCTTATCCGTTATTGCTTTTGTCGGCGGTTTCCA 779 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 717 TTTAGGCATTCCGACAGTAGCTATGTTCTTATCCGTTATTGCTTTTGTCGGCGGTTTTCA 776 Query 780 GCTTTATCGTCACTTGGATCCTGCGGGTAGTCCATTTACCCGCTTGATCCAAGTGGGAGT 839 ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 777 ACTTTACCGTCACTTGGTTCCCGCGGGTAGTCCATTTACCCGCTTGATCCAAGTGGGAGT 836 Query 840 CGCGGCGTTTCGTAAAAGGAAACTGAGGATGGTTTCTGATCCTTCTCTTCTCTATTTCAA 899 |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 837 CGCGGCATTTCGCAAAAGGAAACTGAGGATGGTTTCTGATCCCTCTCTTCTCTATTTTAA 896 Query 900 CGATGAGATTGATGCTCCTATCTCCTTAGGTGGTAAACTTACCCACACCAAACACATGAG 959 ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 897 CGACGAGATTGATGCACCTATCTCCTTAGGTGGTAAACTCACCCACACCAAACACATGAG 956 Query 960 TTTCTTGGACAAGGCGGCAATAGTAACGGAGCAAGACAATTTGAAACCGGGCCAAATCCC 1019 ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| Sbjct 957 TTTCTTGGACAAGGCGGCAATAGTAACGGAGGAAGACAATTTAAAACCGGGTCAAATCCC 1016 Query 1020 CAACCATTGGAGGCTAAGCACAGTCCACCGGGTCGAAGAACTCAAATCGGTGATCCGAAT 1079 |||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| Sbjct 1017 AAACCATTGGAGGCTAAGCACAGTCCATCGAGTCGAAGAACTCAAATCCGTCATCCGAAT 1076 Query 1080 GGGTCCAATCGGAGCCTCCGGGATTCTCCTAATCACAGCCTATGCTCAACAAGGAACCTT 1139 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 GGGTCCAATCGGAGCATCCGGGATTCTCCTAATCACAGCCTATGCTCAACAAGGAACCTT 1136 Query 1140 CTCACTACAACAAGCCAAAACCATGAACCGTCATCTAACAAACTCCTTCCAAATCCCAGC 1199 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1137 CTCATTACAACAAGCCAAAACCATGAACCGTCACCTAACAAACTCCTTCCAAATCCCAGC 1196 Query 1200 CGGTTCAATGTCAGTCTTCACAACCATCGCAATGCTTACCACAATCGTCTTTTACGACCG 1259 |||||||||||| |||||||||||| |||| ||||||||||||||| |||| |||||||| Sbjct 1197 CGGTTCAATGTCCGTCTTCACAACCGTCGCTATGCTTACCACAATCATCTTCTACGACCG 1256 Query 1260 CATTTTCGTCAAAGTCGCTCGCAAATTCACCGGACTCGAAAGAGGCATCACGTTCCTTCA 1319 | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1257 CGTCTTCGTCAAAGTCGCTCGCAAATTCACCGGTCTCGAAAGAGGCATCACGTTCCTCCA 1316 Query 1320 CCGTATGGGAATCGGATTCGTAATCTCGATAATCGCCACGCTAGTCGCCGGATTCGTCGA 1379 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1317 CCGTATGGGAATCGGATTCGTAATCTCGATAATCGCCACGTTAGTTGCCGGATTCGTCGA 1376 Query 1380 AATCAAGCGAAAAAGCGTCGCGATTGAGCACGGTCTCCTCGATAAACCTCACACGATTGT 1439 | | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 AGTAAAGCGAAAGAGCGTCGCGATTGAGCACGGTCTCCTCGATAAACCTCACACGATTGT 1436 Query 1440 TCCAATCTCGTTTCTTTGGTTGATTCCTCAGTACGGTCTCCATGGAGTCGCCGAAGCTTT 1499 |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 1437 TCCAATCTCGTTTCTTTGGTTGATTCCTCAATATGGTCTCCATGGAGTCGCTGAAGCTTT 1496 Query 1500 CATGTCGATCGGACATTTAGAGTTCTTCTACGATCAGGTGCCGGAGAGTATGAGGAGCAC 1559 |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1497 CATGTCCATCGGACATTTAGAGTTCTTCTACGATCAGGCACCGGAGAGTATGAGGAGCAC 1556 Query 1560 GGCGACGGCGCTTTTTTGGATGGCGATTTCGATCGGAAACTATGTGAGCACTTTGCTAGT 1619 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1557 GGCAACGGCGCTTTTTTGGATGGCGATTTCGATCGGAAACTATGTGAGCACTTTGCTGGT 1616 Query 1620 GACTTTGGTTCATAAATTCAGTGCTAAACCGGATGGGAGCAATTGGTTACCGGATAACAA 1679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 GACTTTGGTTCATAAATTCAGTGCTAAACCGGATGGGAGCAATTGGTTACCGGATAACAA 1676 Query 1680 TTTGAACCGAGGGAGGCTTGAGTATTTTTACTGGTTGATTACAGTATTACAAGCTGTTAA 1739 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1677 TTTGAACCGAGGGAGGCTTGAGTATTTTTACTGGTTGATTACTGTGTTACAAGCTGTTAA 1736 Query 1740 TCTTGTGTATTATCTATGGTGCGCCAAGATTTACACGTATAAACCGGTTCAGGTGCATCA 1799 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1737 TCTTGTGTATTATCTATGGTGCGCCAAGATTTATACGTATAAACCGGTTCAGGTTCATCA 1796 Query 1800 TAGCAAGGAAGAGAGTAGTCCGGTTAAGGAGGAATTGCAGTTGTCCAATAGGAGTTTAGT 1859 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1797 TAGCAAGGAAGATAGTAGTCCGGTTAAGGAGGAATTGCAGTTGTCAAATAGGAGTTTAGT 1856 Query 1860 TGATGCATGAGTCTTGG-GTTGGGTGTGTAATGTAAAATTACTAAATTAGTATAGTTGTA 1918 ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1857 TGATGAATGAGTCTTGGCGTTGGATGTGTAATGTAAAATTACTAAATTAGTATAGTTGTA 1916 Query 1919 ATATGTATTTATCAATCTATATATATAATAAATTAGAAAGAATGACTTTGTCCATTGTTG 1978 ||||||| ||||||||| | ||| | | | | |||||||||||||||||||||||||| Sbjct 1917 ATATGTACTTATCAATCCA-ATA-A-A-T---T-AGAAAGAATGACTTTGTCCATTGTTG 1968 Query 1979 TGGGTTTTCAATACGGATAAAC 2000 ||||| ||||||| ||||||| Sbjct 1969 TGGGTGTTCAATATTGATAAAC 1990 > AT1G68568.1 | Symbols: | other RNA | chr1:25746977-25747654 REVERSE LENGTH=510 Length=510 Score = 388 bits (210), Expect = 8e-107 Identities = 219/223 (98%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 417 GATATCGGCAATAATACCAACGTTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGT 476 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 272 GATATCGGCAATAATACCAACGCTAAGGCCACCACCATGTAAAGGAGAAGAGGTTTGTGT 213 Query 477 AGTAGCTGACACAGCACAATTGAGTATA-TTATACGTAGCTCTTCTTCTTGGAGCTCTCG 535 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 212 AGTAGCTGACACAGCACAATTGAGTATACTT-TACGTAGCTCTTCTTCTTGGAGCTCTCG 154 Query 536 GGTCGGGTGGGATCCGGCCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGG 595 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 GGTCGGGTGGGATCCGACCATGTGTTGTTGCTTTTGGTGCTGATCAGTTCGACGAGTCGG 94 Query 596 ATCCTAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTA 638 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 93 ATCCTAATCAAACCACCAAAACTTGGAACTACTTCAACTGGTA 51 Score = 344 bits (186), Expect = 2e-93 Identities = 200/207 (97%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 183 GAACGAGATATGTGAAAAATTAGCGGTGGTTGGGTTTCACGCAAACATGATAAGTTACTT 242 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 479 GAACGAGATATGTGAAAAATTAGCGGTGGTGGGGTTTCACGCAAACATGATAAGTTACTT 420 Query 243 AACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCCGG 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 AACAACACAGCTTCACCTTCCCTTAACCAAAGCAGCCAACACTCTCACAAACTTCGCCGG 360 Query 303 AACTTCGAGTCTCACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGGTT 362 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 359 GACATCGAGTCTTACTCCTCTCCTTGGTGCCTTTATCGCCGACTCTTTCGCCGGCCGATT 300 Query 363 CTGGACCATCACGTTTGCTTCCATCAT 389 ||||||||||| |||||||||||||| Sbjct 299 TTGGACCATCACTTTTGCTTCCATCAT 273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99095875830 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5