BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475994 Length=1432 Score E Sequences producing significant alignments: (Bits) Value AT1G68670.1 | Symbols: | myb-like transcription factor family ... 1661 0.0 AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor fam... 145 1e-33 AT1G25550.1 | Symbols: | myb-like transcription factor family ... 52.8 9e-06 > AT1G68670.1 | Symbols: | myb-like transcription factor family protein | chr1:25782029-25784076 FORWARD LENGTH=1583 Length=1583 Score = 1661 bits (899), Expect = 0.0 Identities = 1163/1282 (91%), Gaps = 52/1282 (4%) Strand=Plus/Plus Query 36 AAACCAAAActctctctctctatctctatctctatctctatctctT--CAAAT-ATCAAA 92 ||||| |||| | ||||||| ||||| ||||| |||||||||||| |||| | |||| Sbjct 130 AAACCTAAAC-C-CTCTCTC--TCTCTCTCTCTCTCTCTATCTCTTGAAAAATCAACAAA 185 Query 93 ACATTGGAATCAATTTCTCTATGTTTTGATTCCATTTTAAAGATCCAATATTCCTTCTCC 152 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 186 ACATTGGAATCAATTTCTCTATGTTTTGATTCTATTTTAAAGATCCAATATTCTTTCTCC 245 Query 153 ATTTGAAAAGTAAGCTTCTTTCTTCGCTGTCGTCTCTCTGTAGATCTTGGTTCTTGGTCC 212 | ||| | | |||||||||||| |||||||||||||||| ||||||||||||||| |||| Sbjct 246 A-TTG-AGATTAAGCTTCTTTC-TCGCTGTCGTCTCTCTATAGATCTTGGTTCTTAGTCC 302 Query 213 CTTTAGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 272 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 CTTTTGAATAATAATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGA 362 Query 273 ATACGTTGAAGCACTTGAAGAAGAACAAAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 332 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 363 ATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCGAGCTTCC 422 Query 333 TTTATGTTTAGAGCTTGTTACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGT-- 390 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 423 TTTATGTTTAGAGCTTGTCACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTAC 482 Query 391 -ACGACAACAACATCAGAACAGTGTTCGGAACAGACAATAAGTGTTTGTGGTGGTCCTGT 449 |||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||| Sbjct 483 GACGACAACTACATCAGAACAGTGTTCAGAACAGACCACAAGTGTTTGTGGTGGTCCTGT 542 Query 450 CTTTGAAGAGTTTATTCCTATCAAG--AA-GAGGT-C--GT-T---G-TGT----gaaga 494 ||||||||||||||||||||||||| || || | | || | | || ||||| Sbjct 543 CTTTGAAGAGTTTATTCCTATCAAGAAAATTAGTTCCTTGTGTGAAGAAGTACAAGAAGA 602 Query 495 agaagaagaagaTGGTGAACATGAATCTTCTCCAGAGCTTGAACAGATTGGTAATAATAA 554 |||||||||||||||||||||||||||||||||||| ||| | | | |||||||| Sbjct 603 AGAAGAAGAAGATGGTGAACATGAATCTTCTCCAGAACTT-----G--T-G-AATAATAA 653 Query 555 GAAATCTGATTGGCTTAGATCTGTTCAGTTATGGACTCCA-TCACCAGATCTTAACCCGA 613 |||||| ||||||||||||||||||||| |||||| | || ||||| ||||| || || | Sbjct 654 GAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAAT-CATTCACCGGATCTAAATCCAA 712 Query 614 AAGAGGAGCGTGTAGTTAAGAAAGCGAAAGTGGTGGAGGTGACACCAAAAAGCGGTGCGT 673 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 713 AAGAGGAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGGTGCGT 772 Query 674 TTCAGCCGTTTCAAAAGGAGAAAAAACGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 733 |||||||||||| ||| || |||||||||||||||||||||||||||||||||| Sbjct 773 TTCAGCCGTTTC-AAA--AG------CGCGTTTTGGAGACTGATTTGCAACCGGCGGTGA 823 Query 734 AAGTAGCTAGTTCGACGCCGGCGACGACGACGAGTTCTACGACGGAAACTGGTGGTGCTA 793 ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| || Sbjct 824 AAGTAGCTAGTTCGATGCCAGCGACGACGACGAGTTCTACGACGGAAACTTGTGGTGGTA 883 Query 794 AAAGTGAGTTGGTTAAAG-TGGGAGAGGAGCAGAGACAGATAGAGCAGCAGCAATCGCAG 852 ||||||| ||| |||||| | ||||| ||| | |||| |||||||||||||||||||||| Sbjct 884 AAAGTGATTTGATTAAAGCT-GGAGATGAGGAAAGACGGATAGAGCAGCAGCAATCGCAG 942 Query 853 TCGCAAACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAGTTACACCGGCGATTCTTA 912 ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| || Sbjct 943 TCGCATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTA 1002 Query 913 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACGCCTAAA-CAGATTAGAGATCA 971 |||||||||||||||||||||||||||||||||||||| || ||| || || || ||||| Sbjct 1003 AACGCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCA 1061 Query 972 TATGAAAGTCGATGGATTAACAAATGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1031 ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1062 CATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACT 1121 Query 1032 TCACACAAGAAGGCCAGCAGCAACATCGGTGGCGGCACAGAGCAACGGAAACCCGCAACA 1091 ||||||||||||||||||||||||||| ||||||||||| || | ||| || | |||||| Sbjct 1122 TCACACAAGAAGGCCAGCAGCAACATCCGTGGCGGCACAAAGTACCGGGAATCAGCAACA 1181 Query 1092 ACCGCAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGCCACAAGATTTTCCACCACC 1151 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1182 ACCACAATTTGTGGTGGTTGGAGGCATATGGGTACCATCGTCACAAGATTTTCCACCACC 1241 Query 1152 GTCCGATGTAGCCAACAACGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1211 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 GTCCGATGTAGCCAACAAGGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAA 1301 Query 1212 ACGTTCGGTGGAGAGAAGTTGTAACTCGCCGGCAGCATCTTCCTCTACAAATACAAATAC 1271 ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1302 ACGTTCGTTGGAGAGAAGTTGCAACTCGCCGGCGGCATCTTCCTCTACAAATACAAATAC 1361 Query 1272 TTCTACTCCTGTATCATAATCT 1293 |||||||||||| ||||||||| Sbjct 1362 TTCTACTCCTGTGTCATAATCT 1383 Score = 178 bits (96), Expect = 1e-43 Identities = 129/144 (90%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 1293 TTATGTGAGTGTaaaaaaaaaaTTCGTCCG-TTTTGTTTGTAACAAAGAAATGTTATTTC 1351 |||||||| ||||| ||| | |||||||| ||||||||||||| ||||||||||||||| Sbjct 1440 TTATGTGAATGTAAGAAATATTTTCGTCCGTTTTTGTTTGTAACCAAGAAATGTTATTTC 1499 Query 1352 CTAGGTTGGAAATTTTGAATAAAGTAGACGAATGC-A--ATGTAGTATATACACGAGAGA 1408 || |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1500 CTCGGTTGGAAATTTTGAATAAAGTAGACGAATGCTACTATGTAGTATATACACGAGA-- 1557 Query 1409 TAAGTAAAGAATCTTTGTTTTTCT 1432 ||||| |||| ||||||||||||| Sbjct 1558 TAAGTGAAGACTCTTTGTTTTTCT 1581 Score = 52.8 bits (28), Expect = 9e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28 |||||||||||||||||||||||||||| Sbjct 76 TTTAGGTACGCGACGGCCCGACCTCGAT 103 > AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor family protein | chr1:4556892-4558708 FORWARD LENGTH=1237 Length=1237 Score = 145 bits (78), Expect = 1e-33 Identities = 151/186 (81%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 865 AGAAAACAAAGGCGGTGCTGGTCGCCGGAGTTACACCGGCGATTCTTAAACGCGCTTCAG 924 ||||| ||||| |||| |||||| || | || || | || ||||| ||||| ||||| Sbjct 623 AGAAAGCAAAGAAGGTGTTGGTCGTCGCAATTGCATAGACGCTTCTTGAACGCTCTTCAA 682 Query 925 CAGCTT-GGAGGATCTCATGTTGCTACGCCTAAA-CAGATTAGAGA-TCATATGAAAGTC 981 || ||| || ||| ||||||| |||||||| ||| || || || || | |||||| || Sbjct 683 CA-CTTAGGTGGACCTCATGTAGCTACGCC-AAAGCAAATCAGGGAGT-TTATGAAGGTT 739 Query 982 GATGGATTAACAAATGACGAAGTTAAAAGCCATTTACAGAAATATAGACTTCACACAAGA 1041 ||||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 740 GATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGA 799 Query 1042 AGGCCA 1047 |||||| Sbjct 800 AGGCCA 805 > AT1G25550.1 | Symbols: | myb-like transcription factor family protein | chr1:8976434-8978093 FORWARD LENGTH=1396 Length=1396 Score = 52.8 bits (28), Expect = 9e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28 |||||||||||||||||||||||||||| Sbjct 17 TTTAGGTACGCGACGGCCCGACCTCGAT 44 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70581966270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5