BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476006 Length=3569 Score E Sequences producing significant alignments: (Bits) Value AT1G68790.1 | Symbols: LINC3 | little nuclei3 | chr1:25834709-2... 5132 0.0 > AT1G68790.1 | Symbols: LINC3 | little nuclei3 | chr1:25834709-25839319 REVERSE LENGTH=3643 Length=3643 Score = 5132 bits (2779), Expect = 0.0 Identities = 3272/3505 (93%), Gaps = 54/3505 (2%) Strand=Plus/Plus Query 105 TTCGAACGGAAATGTTCACTCCGCAGAGGAATCGGTGGCCGGAGACTGACCGGAAAGGAA 164 ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| Sbjct 152 TTCGAACGGAAATGTTCACTCCGCAAAGGAATCGTTGGCCGGAGACAGACCGGAAGGGAA 211 Query 165 AGGCCATAGCTTTTTCCGACGAAATCATGACACCTCCTCCACAAACAGTGCTTCTCCGAG 224 |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 212 AGGCCATAGCTTTTTCCGACGAAATCATTACACCTCCTCCACAAAGGGTGCTTCTCCGAG 271 Query 225 AGGACGATGATTGGCGGAAGTTCAAAGAGGTTGGTTTGCTCGATGAAGCTTCTCTAGAGA 284 |||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 272 AGGATGATGATTGGCAGAAGTTCAAAGAGGTTGGCTTGCTTGATGAAGCTTCTCTAGAAA 331 Query 285 GAAAAGATCGTGATGCTCTTATAGAGAAAATCTTGAAGCTTGAAAAAGAGTTGTTTGATT 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332 GAAAAGATCGTGATGCTCTTATAGAGAAAATCTTGAAGCTTGAAAAAGAGTTGTTTGATT 391 Query 345 ACCAACATAACATGGGGCTTTTGCTAATTGAGAAGAAGAAGTGGACTTCAACAAATGTAC 404 |||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||| || Sbjct 392 ACCAACATAATATGGGGCTATTGCTTATTGAGAAGAAGCAGTGGACTTCAACAAAT-AAC 450 Query 405 -AACTTCAACAAGCTTATGATGAAGCTACAGAGATTCTTAAACGTGAAAAGACGTCGAAT 463 ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct 451 GAACTTCAACAAGCTTATGATGAAGCTATGGAGATGCTTAAACGTGAGAAGACGTCAAAT 510 Query 464 GTAATTGCTTTAAATGAAGCTGAAAAAAGAGAAGAGAATCTTAGAAAAGCTTTGATCGCT 523 | |||| |||||||||||||||| |||||||||||||||||||||||||||||||| | | Sbjct 511 GCAATTACTTTAAATGAAGCTGACAAAAGAGAAGAGAATCTTAGAAAAGCTTTGATTGAT 570 Query 524 GAGAAGCAATTTGTGGCTGAGCTTGAGAAGGATTTGAAGTATTGGCAACAAGAACATTCT 583 |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||| Sbjct 571 GAGAAGCAATTTGTTGCTGAGCTTGAGAATGATTTGAAGTATTGGCAACGAGAACACTCT 630 Query 584 GTGGTGAAGTCTACTTCTGAGGAAAAGTTAGCGGAAGCTAATGCTTTGGTTATTGGTATG 643 |||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||| Sbjct 631 GTGGTGAAGTCTACTTCTGAGGCAAAGTTAGAGGAAGCAAATGCTTTGGTAATTGGTATG 690 Query 644 AAGGAAAAAGCTTTAGAGGTGGATAGAGAGAGAGCTATTGCTGAAGAAAAGTTTTCAGTG 703 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 691 AAGGAAAAAGCTTTAGAGGTGGATAGAGAAAGGGCCATTGCTGAAGAAAAGTTTTCAGTG 750 Query 704 ATTAATAGAAAGAGTTCTGAGTTAGAACGGAAACTAAAGGAGGTGGAGACTCGTGAAAAG 763 || |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 751 ATGAATAGAAAGAGTTCTGAGTTAGAACGCAAACTAAAGGAAGTGGAGACCCGTGAAAAG 810 Query 764 GTGCTTCAAAGGGACCATCTTTCGCTAGTAACAGAACGAGAAGCACATGAGGCAGTGTTT 823 |||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 811 GTGCACCAAAGGGAGCATCTTTCTCTAGTTACAGAACGAGAAGCACATGAGGCAGTGTTC 870 Query 824 TACAAGCAGAGAGAAGACCTACAGGAATGGGAGAAGAAGCTAACACTAGAAGAAGATAGG 883 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 871 TACAAGCAGAGAGAAGACCTACAGGAATGGGAGAAGAAGTTAACACTGGAAGAAGATAGG 930 Query 884 TTGTCTGAAGTTAAAAGAAGTATTAACCATAGAGAAGAAATAATTATGGAAAAGGAAAGA 943 |||||||||||||||||||| ||||||||||||||||||| | |||||||||| |||||| Sbjct 931 TTGTCTGAAGTTAAAAGAAGCATTAACCATAGAGAAGAAAGAGTTATGGAAAATGAAAGA 990 Query 944 ACCATCAAGAAGAAAGAGAAGATCCTTGAAAACTTGCAGCAAAAGATTTATATTGCTAAG 1003 |||||| ||||||||||||||||||||||||| || ||||||||||||| | |||| ||| Sbjct 991 ACCATCGAGAAGAAAGAGAAGATCCTTGAAAATTTACAGCAAAAGATTTCTGTTGCCAAG 1050 Query 1004 TCAGAATTGACAGAGAAAGAGGAATCTATAAAGATTAAGCTAAATGACATTTCTTTGAAG 1063 || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1051 TCCGAATTAACAGAGAAAGAAGAATCTATAAAGATTAAGCTAAATGACATTTCTTTGAAG 1110 Query 1064 GAAAAAGACTTCGAGGCCATGAAGGCTAAAGTTGATATCAAAGAGAAGGAGCTCCATGAG 1123 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 GAAAAAGACTTTGAGGCCATGAAGGCTAAAGTTGATATCAAAGAGAAGGAGCTCCATGAG 1170 Query 1124 TTTGAGGAGAAGCTTATTGAAAGGGAGCAGATGGAAATTGGGAAGCTCCTTGATGATCAG 1183 ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 1171 TTTGAGGAGAATCTTATTGAGAGGGAGCAGATGGAGATTGGGAAGCTTCTTGATGATCAG 1230 Query 1184 AAGGCTGTTCTAGATTCAAGAAGGCAG-GAGTTTGAAATGGAGCTTGAACAGATGAGGAG 1242 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 1231 AAGGCTGTTCTAGATTCAAGAAGGC-GAGAGTTTGAAATGGAGCTTGAACAGATGAGGAG 1289 Query 1243 ATCCCTTGATGAAGAACTCGAGGGAAAGAAAGCTGAAATCGAGCAGCTGCAAATTGAGAT 1302 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1290 ATCCCTTGATGAAGAACTCGAGGGAAAGAAAGCTGAAATCGAGCAGCTGCAAGTTGAGAT 1349 Query 1303 CAGCGAAAAAGAAGAGAAGTTGGCTAAGAGAGAGGCAGCTTTAGA-AAAAATGGAGGAGG 1361 |||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1350 CAGCCACAAAGAAGAGAAGTTGGCTAAGAGAGAGGCAGCTTTAGAGAAAAA-GGAGGAGG 1408 Query 1362 GAGTGAAGGAGAAAGAGAAGGATCTTGAAGCAAGTCTCaaaactgtgaaggaaaaagaaa 1421 |||||||| ||||||||||||||||||| ||||| |||||||| |||||||| ||||||| Sbjct 1409 GAGTGAAGAAGAAAGAGAAGGATCTTGATGCAAGGCTCAAAACCGTGAAGGAGAAAGAAA 1468 Query 1422 aatctctaaaagctgaagagaaaaagctgcatatagaaaaTGAGAGATTGCACGAAGATA 1481 || |||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||| Sbjct 1469 AAGCTCTGAAAGCTGAAGAGAAAAAGCTGCATATGGAAAACGAGAGATTGCTCGAAGATA 1528 Query 1482 AGGAATGTCTGCGTAAACTAAAAGATGAGATTGAAGAGATTGGGGCTGAGACAACAAAGC 1541 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1529 AGGAATGTCTGCGTAAACTAAAAGATGAGATTGAAGAGATCGGGACTGAGACAACAAAGC 1588 Query 1542 AGGAATCAAGGATTCGCGAAGAACATGAAAGTCTCAGGGTTACAAAAGAAGAGAGAGTCG 1601 |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1589 AGGAATCAAGGATTCGTGAAGAACATGAAAGTCTTAGGATTACAAAAGAAGAGAGAGTCG 1648 Query 1602 AGTTTCTGAGGCTGCAATCTGAACTGAAGCAGCAGATAGATAAAGTTAAGCAAGAGGAGG 1661 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1649 AGTTTCTGAGGCTGCAGTCTGAACTGAAGCAGCAGATAGATAAAGTTAAGCAAGAGGAGG 1708 Query 1662 AGGTTCTCTTGAAAGAACGTGAAGAACTGAAACAAGATAAGGAAAGATTTGAGAAAGAGT 1721 || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1709 AGCTGCTCTTGAAGGAACGTGAAGAACTGAAACAAGATAAGGAAAGATTTGAGAAAGAGT 1768 Query 1722 GGGAAGCTTTGGATCAGAAGAGGGCTGACATAACTAAAGAGCAAAACGAAGTTGCTGAAG 1781 |||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| Sbjct 1769 GGGAAGCTTTGGATAAGAAGAGGGCTAACATAACTAGAGAGCAAAATGAAGTTGCTGAAG 1828 Query 1782 AAAAGGAGAAACTGAGAAATTTGCAAATATCAGAAAAGCATAGGCTGAAGAGAGAAGAGA 1841 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1829 AAAACGAGAAACTGAGAAATTTGCAAATATCTGAAAAGCATAGGCTGAAGAGAGAAGAGA 1888 Query 1842 TGACCTCAAGGGATAATTTGAAGAGGGAATTGGATGGTGTCAAGATGCAGAAAGAATCAT 1901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1889 TGACCTCAAGGGATAATTTGAAGAGGGAATTGGATGGTGTCAAGATGCAGAAAGAATCAT 1948 Query 1902 TTGAAGCCGACATGGAAGATCTTGAGAAGCAAAAAAGGAATCTTGACATGGAGTTTCAGA 1961 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 1949 TTGAAGCCGACATGGAAGATCTTGAGATGCAAAAAAGGAATCTTGACATGGAATTTCAGA 2008 Query 1962 GGCAAGAAGAAGAGGGTGAGAGAGATTTTAATGAAAGGGCGAGAACATATAAGAAGAGAA 2021 |||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 2009 GGCAAGAAGAAGCGGGTGAAAGAGATTTTAATGAAAGGGCGAGAACATATGAGAAGAGAA 2068 Query 2022 GCCAAGAAGAGCTTGACAACATCAATTACACAAAGAAGCTGGCTCAAAGAGAGATGGAAG 2081 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2069 GCCAAGAAGAGCTTGACAACATTAATTACACAAAGAAGCTGGCTCAAAGAGAGATGGAAG 2128 Query 2082 AAGTGCAATACGAGAAGCTTGCTCTTGAGAGGGAAAGAGAACAAATTTCTGTCCAAAAGA 2141 || |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| Sbjct 2129 AAATGCAATACGAGAAGCTTGCTCTGGAGAGGGAAAGAGAACAAATTTCGGTCCGAAAGA 2188 Query 2142 AGTTGTTGAAAGAACAAGAAGCTGAGATGCATAAGGACATCACTGAGCTAGATATACTTA 2201 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 2189 AGTTGTTGAAAGAACAAGAAGCTGAGATGCATAAGGACATCACTGAGCTAGATGTACTCA 2248 Query 2202 GAAGCTCTTTGAAGGAGCAACGAGAAA-AATTTATCTGTGAAAGGGAGCGTTTCTTAGTA 2260 ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||| Sbjct 2249 GAAGCTCTTTGAAGGAGAAACGA-AAAGAATTTATCTGTGAAAGGGAGCGTTTCCTAGTA 2307 Query 2261 TTTCTGGAAAAACTTAAGAGCTGCAGTTCCTGTGGAGAAATAACCGAAAATTTTGTTCTG 2320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2308 TTTCTGGAAAAACTTAAGAGCTGCAGTTCCTGTGGAGAAATAACCGAAAATTTTGTTCTG 2367 Query 2321 TCTGATCTTCGACTACCTGATGTTGAGGATGGGGACAAACGTTTCGGGAAACAAAAATTA 2380 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2368 TCTGATCTTCGACTACCTGATGTTGAAGATGGGGACAAACGTTTCGGGAAACAAAAATTA 2427 Query 2381 ATAGTAGAGGAAGCTTTGAACATTTCTCCCAGTGCAGAGAATAGCAGGAGAACATCTTTG 2440 | || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2428 AAAGCAGAGGAGGCTTTGAACATTTCTCCCAGTGCAGAGAATAGCAAGAGAACATCTTTG 2487 Query 2441 CTTGGGAAAATCGCTTCAAAGCTATTGAGCATATCACCAATTGGGAA-A--GATAAAGTC 2497 |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 2488 CTTGGGAAAATCGCTTCAAAGCTACTGAGCATATCACCAATTGGGAAGACAGATAAAGTC 2547 Query 2498 ACTGATCTGGGTATAACGGCTAAGCTTCCAGAATCTTCGCAACCTGATGATACTCTGGAT 2557 ||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| Sbjct 2548 ACTGATCTGGGTATAACAGTTAAGCTTCCAGAATCTTCGCAACCTGATGATTCTCTGGAT 2607 Query 2558 ATAGTGTCAGGCGATGATCATGAACCGTCTGCTACTGAACAGAGTTTCACAGATAGTAGA 2617 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2608 AGAGTGTCAGGCGAGGATCATGAACCGTCTGCTACTGAACAGAGTTTCACAGATAGTAGA 2667 Query 2618 ATACAAGATGGTCCTGAAGGTTCCCTGCAATCAGAAATAAAGAGTGATAAACCTAGACga 2677 |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 2668 ATACAAGAAGGTCCTGAAGGTTCCCTCCAATCAGAGATGAAGAGTGATAAACCTAGACGA 2727 Query 2678 ggtagaggtagaggtagaggtagaggtaggggtaAGTCTGCTAGAGGAAGATCGCAAGCA 2737 ||||||||||||||||||||||| || | |||||||| ||||||||||||||||||| Sbjct 2728 GGTAGAGGTAGAGGTAGAGGTAG-GG--G---TAAGTCTGTTAGAGGAAGATCGCAAGCA 2781 Query 2738 ACAAAAGCTGCCTCTAGAGATTCAAAACCATCTGATGGTGAAATTCCAAGGAAGCGACAA 2797 |||||||||| || ||||||||||||||||||||||| |||| |||||||||||| ||| Sbjct 2782 ACAAAAGCTGTGTCCAGAGATTCAAAACCATCTGATGGGGAAACTCCAAGGAAGCGGCAA 2841 Query 2798 CGTGAACAGACTTCTAGAATCACAGAAAGTGAACAGGTAGCTGGTGATAGTGATGATGGT 2857 || |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 2842 CGCGAACAGACTTCTAGAATCACAGAAAGTGAACAGGCAGCTGGTGATAGTGATGAGGGT 2901 Query 2858 GTAGACAGTACCACAACTGGTGGACGTAGGaaaaaaaGACAGATAGCTGTTCCAGTCTCT 2917 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2902 GTAGACAGTATTACAACTGGTGGACGTAGGAAAAAAAGACAGATAGCTGTTCCAGTCTCT 2961 Query 2918 CAAACGCCTGGACAAAGCCGATATCAACTCAGGAGACATAGAAATGTAGGAACAGAAGAA 2977 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2962 CAAACGCCTGGACAAACCCGATATCAGCTCAGGAGACATAGAAATGTAGGAACAGAAGAA 3021 Query 2978 GTTAAAGCACAAGCATCAATGGGTGCCACTAAAAAACAAGAGA-GTGTCAATGGTGATAT 3036 | ||||||||||||||||| |||||||||| |||||||||| | ||||||||| |||||| Sbjct 3022 GATAAAGCACAAGCATCAAAGGGTGCCACTGAAAAACAAGA-ACGTGTCAATGATGATAT 3080 Query 3037 TAGAACAGTGCCAAGTCCGAAGGAAGCTCTTACTCCACCGCAAGGTGAGAATAGAGAAAA 3096 |||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| Sbjct 3081 CAGAAAAGTGCCAAGTCCGAAGGAAACTCGTACTCCACCGGAAGGTGAGAATAGAGAAAA 3140 Query 3097 TGGCAAAGCTGAAGTATTCGTGGAGACGGTAACACATGAGGAGATTGTTAGGGTTGAAGT 3156 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 3141 TGGCAAAGCTGAAGTATTAGTGGAGACGGTAACACATGAGGAGATTGTTACGGTTGAAAC 3200 Query 3157 AGAGACTGAGTTCAAGGATAACAACACGGGAAATAGGCTAGTCGAAGATCAGCAGTTGGA 3216 ||| |||| |||||||| ||||||||| ||||| | | ||||||||||| ||||||||| Sbjct 3201 AGAAACTGTGTTCAAGGTTAACAACACAGGAAAGAACCCAGTCGAAGATCCGCAGTTGGA 3260 Query 3217 AGCAGGAGGCAGCGGTGAAATAAGAGAGCATGGTGAAGATGATGATGAGAATTTCAGCAT 3276 || ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 3261 AGTAGGAGGCAGTGGTGAAATAAGAGAGCATGGTGAAGAAGATGATGAGAATATCAGCAT 3320 Query 3277 GATCGAAGAGGAGAACGAAGGAGAGGAAGAAGAAGAAACCGAGCGCCAAGG---TGATGC 3333 |||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 3321 GATCGAAGAGGAGAACGAAGGAGAAGAAGAAGAAGAAACAGAGCGCCAAGGAAATGATGC 3380 Query 3334 TTCCATAGGAAAAAAGATTTGGGTCTTTTTCACAACTTGATCATTTTCTTTATTTCTCTT 3393 |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 3381 TTCCATAGGAAAAAAGATTTGGGTCTTTTTCACAACATGATCATTTTCTTCATTTCTCTC 3440 Query 3394 TAAATA-ACAAAA--A-CTATCCCACATGTAGGATTTTGCAACATCTTGTTATGTGTTGG 3449 |||| | |||||| | | |||||| | |||||||||||||||||||||||||||||||| Sbjct 3441 TAAA-AGACAAAATTATC-ATCCCATAAGTAGGATTTTGCAACATCTTGTTATGTGTTGG 3498 Query 3450 TTc-ttttttaact-tctt-tttctttttCTAAGCAACTTGAAA--CAAAAAGG------ 3498 ||| |||||||||| || ||||||| ||||||||||| |||| |||||||| Sbjct 3499 TTCGTTTTTTAACTATCACCTTTCTTTATCTAAGCAACT-GAAAAACAAAAAGGAAGTGG 3557 Query 3499 ---C-----A-----TGGGCATTGTAGGAAATGTAACATTTGATTCTTACTCTGCCACTC 3545 | | |||||||||||| ||||||||||||||||| ||||||||| |||| Sbjct 3558 AATCTTGGGAAGGCATGGGCATTGTAGAAAATGTAACATTTGATTTTTACTCTGCTACTC 3617 Query 3546 CATA-GATAATGCTGGTATTCAAGG 3569 |||| | |||||||||||||||||| Sbjct 3618 CATAAGGTAATGCTGGTATTCAAGG 3642 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 177691312106 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5