BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476011 Length=1357 Score E Sequences producing significant alignments: (Bits) Value AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2, EDF2, AtRAV2 | relat... 1868 0.0 AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor... 573 1e-162 > AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2, EDF2, AtRAV2 | related to ABI3/VP1 2 | chr1:25880327-25881736 FORWARD LENGTH=1410 Length=1410 Score = 1868 bits (1011), Expect = 0.0 Identities = 1129/1185 (95%), Gaps = 11/1185 (1%) Strand=Plus/Plus Query 1 GTAACAACGTCACCAAAATCTCTCTCACCTAATTTGTGTTACTTCTTTCTGTTAAAAGGT 60 |||||||||||||| |||||||||||||| |||||||||| |||||||||| |||||||| Sbjct 1 GTAACAACGTCACCTAAATCTCTCTCACCCAATTTGTGTTTCTTCTTTCTGCTAAAAGGT 60 Query 61 TATAATTTGTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACAGAAAC-AA-AAAATGGA 118 |||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 61 TATAATTTTTGTTTCTTGGTTTGGTGAGAATCTTCAAGAAACTGAAACAAAGAAAATGGA 120 Query 119 TTCCAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCAGCCACCGCCAC 178 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| || | Sbjct 121 TTCTAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCCGCCACCACCGC 180 Query 179 CTTG--TCTCTTCCTTCTCATCCGGCTGCGGCGTTACGCCTCTACCGGATGGGAAGTGGC 236 | | ||| | || ||| ||| || ||||||||||||||||||||||||||||| ||| Sbjct 181 CAAGAAGCTC-T-CTCCTCCTCCCGCGGCGGCGTTACGCCTCTACCGGATGGGAAGCGGC 238 Query 237 GGAAGTAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 296 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GGGAGCAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCA 298 Query 297 TCGTCAAAATACAAAGGTGTGGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 356 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 299 TCTTCAAAATACAAAGGTGTTGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTAC 358 Query 357 GAGAAACACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 416 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GAGAAGCACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCC 418 Query 417 TACGACATCGCCGCTCGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 476 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TACGACATCGCAGCTTGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTT 478 Query 477 CTGGAAGACGGTGATTTAGCTTTTCTTGAAGCTCACTCTAAGGCCGAGATCGTGGATATG 536 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 479 CTGGAAGACGGCGATTTAGCTTTTCTTGAAGCTCACTCAAAGGCCGAGATCGTCGACATG 538 Query 537 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAAAACAATAAACGGCGGTTGTTTCTC 596 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 539 TTGAGAAAACACACTTACGCCGACGAGCTTGAACAGAACAATAAACGGCAGTTGTTTCTC 598 Query 597 TCCGTCGACGTTAACGGAAAACGTAACGGATCGAGTACAACTCAAAACGA-AAACGTTTT 655 |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||| Sbjct 599 TCCGTCGACGCTAACGGAAAACGTAACGGATCGAGTACTACTCAAAACGACAAA-GTTTT 657 Query 656 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTCGGGAAGCTAAA 715 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 658 AAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTTGGGAAGCTAAA 717 Query 716 CCGTCTCGTGATACCTAAACAACACGCGGAGAAACACTTTCCGTTACCGTCACCGTCACC 775 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 718 CCGTCTCGTGATACCTAAACAACACGCCGAGAAACACTTTCCGTTACCGTCACCGTCACC 777 Query 776 GGCAGTGACTAAAGGCGTTTTGATCAACTTCGAAGACGTTAACGGCAAAGTGTGGAGGTT 835 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 778 GGCAGTGACTAAAGGAGTTTTGATCAACTTCGAAGACGTTAACGGTAAAGTGTGGAGGTT 837 Query 836 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 CCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATT 897 Query 896 CGTCAAGGAGAAGAATCTCCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 955 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 898 CGTCAAGGAGAAGAATCTTCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACT 957 Query 956 AGACCGGCAGCTT-TATATTGATTGGAAAGTCCGATCCGGTCCGAGGGAAAACCCGGTTC 1014 ||| |||||| || ||||||||||||||||| || || |||||||| ||||||||||||| Sbjct 958 AGAGCGGCAG-TTATATATTGATTGGAAAGTTCGGTCTGGTCCGAGAGAAAACCCGGTTC 1016 Query 1015 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACTACCGTGAAGCCAAACG 1074 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1017 AGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACCACCGTGAAGCCAAACG 1076 Query 1075 ACGTCGTAGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1134 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 ACGTCGTGGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTAC 1136 Query 1135 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACAT-TTT 1178 ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1137 GGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGACATATTT 1181 Score = 259 bits (140), Expect = 5e-68 Identities = 169/183 (92%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1175 TTTTGTCAAGTTGTGTAGGTTGTGATTCTTGCTAAGTTGTATTTAGGAAAATAGGACAAG 1234 |||||||||||||||||||||||||||| ||||| |||||||||||||||| || | ||| Sbjct 1221 TTTTGTCAAGTTGTGTAGGTTGTGATTCATGCTAGGTTGTATTTAGGAAAAGAG-ATAAG 1279 Query 1235 ACCaaaaaataaactgaaaaaaaTGGTTTTGTGGAAAAGTGGTAAGTAGACCTACCTCAT 1294 ||||||||||||| || || || |||||||||||||||||||||| |||||||||||||| Sbjct 1280 ACCAAAAAATAAATTGGAACAA-TGGTTTTGTGGAAAAGTGGTAAATAGACCTACCTCAT 1338 Query 1295 AATAAAACGTTACCGGATACAACCTAGATGTGTATCCGTCCCTAAAACTAGATGAATCAA 1354 | |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| Sbjct 1339 AGTAAAACGTTACCGGATACAACCTAAATGTTTATCCGTTCCTAAAACTAGATGAATCAA 1398 Query 1355 ATT 1357 ||| Sbjct 1399 ATT 1401 > AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor family protein | chr1:8981677-8983041 REVERSE LENGTH=1365 Length=1365 Score = 573 bits (310), Expect = 1e-162 Identities = 798/1020 (78%), Gaps = 88/1020 (9%) Strand=Plus/Plus Query 190 CTTCTCATCCGGCTG-CGGCGTTACGCCTCTACCGGATGGGAAGTGGCGGAAGTAGCGTC 248 |||||| ||||| | || || | || |||||| | |||||||| |||||||| |||||| Sbjct 163 CTTCTCCGCCGGC-GACGTCGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGCAGCGTC 221 Query 249 GTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCATCGTCAAAATAC 308 || |||||| | ||||||||| | ||||| |||||||| ||||| || ||||| ||||| Sbjct 222 GTTTTGGATTCAGAGAACGGCGTCGAGACCGAGTCACGTAAGCTTCCTTCGTCGAAATAT 281 Query 309 AAAGGTGTGGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTACGAGAAACACCAA 368 ||||| || || |||||||||||||||||||||||||||||||| |||||||| || || Sbjct 282 AAAGGCGTTGTGCCTCAGCCTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAG 341 Query 369 CGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGC-TCGTTCCTACGACATCGC 427 ||||| |||||||| |||||||||||| ||||||||||||| || ||| ||||||||||| Sbjct 342 CGAGTTTGGCTCGGTACTTTCAACGAGGAAGAAGAAGCTGCGTC-TTCTTACGACATCGC 400 Query 428 CGCTC-GTAGATTCCGTGGCCGCGACGCCGTCG-TCAACTTCAAG----AACGTTC-TGG 480 || | | |||||||| ||||||||||||||| | |||||||| || ||| ||| Sbjct 401 CG-TGAGGAGATTCCGCGGCCGCGACGCCGTCACT-AACTTCAAATCTCAA-GTTGATGG 457 Query 481 AA--GACGGTGATTTAGCTTTTCTTGAAGCTCACTCTAAGGCCGAGATCGTGGATATGTT 538 || |||| || | ||||||||||| ||||| ||||| || ||||||||||||||||| Sbjct 458 AAACGACGCCGAATCGGCTTTTCTTGACGCTCATTCTAAAGCTGAGATCGTGGATATGTT 517 Query 539 GAGAAAACACACTTACGCCGACGAGCTTGAACAAAACAATAAACGGCGGTTGTTTCTCTC 598 ||| ||||||||||||||||| ||| |||| || | || |||| ||| | | | | Sbjct 518 GAGGAAACACACTTACGCCGATGAGTTTGAGCAGAG---TAGACGGAAGTT-TGT-TAAC 572 Query 599 CGTCGACGTTAACGGAAAACG-TAACGGATCGAGTACA---AC-T-CA-AAACGAAAAC- 650 | | || | ||||||||| | || | ||| || || | | |||||| | Sbjct 573 -G--G-CG--A-CGGAAAACGCTCTGGGTTGGAG-ACGGCGACGTACGGAAACGACG-CT 623 Query 651 GTTTTAA-AGACGCGTGAAGTTCTT-TTCGAGAAGGCTGTTACACCTAGCGACGTCGGGA 708 ||||| | || ||||||| ||| || ||||||||| ||||||| || ||||||||||||| Sbjct 624 GTTTTGAGAG-CGCGTGAGGTT-TTGTTCGAGAAGACTGTTACGCCGAGCGACGTCGGGA 681 Query 709 AGCTAAACCGTCTCGTGATACCTAAACAACACGCGGAGAAACACTTTCCGTTACCGTC-A 767 |||| |||||| | |||||||| ||||||||||||||||| || |||||||||||| | | Sbjct 682 AGCTGAACCGTTTAGTGATACCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGA 741 Query 768 ---C--CGTC-ACCGGCA-G--T--GACT---A--AA-GGCGTTTTGATCAACTTCGAAG 810 | || | | || | | | | || | || ||||||||||| ||||| |||| Sbjct 742 TGACGACGGCGATGGGGATGAATCCGTCTCCGACGAAAGGCGTTTTGATTAACTTGGAAG 801 Query 811 AC-GTTAAC-GGCAAAGTGTGGAGGTTCCGTTACTCATACTGGAACAGTAGTCAAAGTTA 868 | | ||| || ||||||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 802 ATAG--AACAGGGAAAGTGTGGCGGTTCCGTTACAGTTACTGGAACAGCAGTCAAAGTTA 859 Query 869 CGTGTTGACCAAGGGATGGAGTCGATTCGTCAAGGAGAAGAATCTCCGAGCCGGTGATGT 928 ||||||||||||||| ||||| || ||||| || ||||||||||| |||||||||||||| Sbjct 860 CGTGTTGACCAAGGGCTGGAGCCGGTTCGTTAAAGAGAAGAATCTTCGAGCCGGTGATGT 919 Query 929 TGTTACTTTCGAGAGATCGACCGGACTAGACCGGCAGCTT-TATATTGATTGGAAAGTCC 987 ||| |||||||||||| ||||||| ||||||||| || ||||| | |||||||||| Sbjct 920 GGTTTGTTTCGAGAGATCAACCGGACCAGACCGGCAA-TTGTATATCCACTGGAAAGTCC 978 Query 988 GATCCGGTCCGAGGGAAAACCCGGTTCAGG-TGGTGGTTCGGCTTTTCGGAGTTGATATC 1046 | || | || || ||||||| || ||||| |||| |||||||| | || Sbjct 979 GGTC---T---AGT-----CC-GGTTCAGACTG-TGGTTAGGCTATTCGGAGTCAACAT- 1024 Query 1047 TTT-AATGTGACTACCGTGAAGCCAAACGACGTCGTAGCCGTTTGCGGTGG-AA-A-GAG 1102 ||| ||||||| || || ||| ||||||||||||| || | || | ||| || | ||| Sbjct 1025 TTTCAATGTGAGTAACGAGAAACCAAACGACGTCGCAGTAGAGTGTGTTGGCAAGAAGAG 1084 Query 1103 ATCTCGAGATGTTGATGATATGTTTGCGTTACGGTGTTCCAAGAAGCAGGCGATAATCAA 1162 |||||| || | |||| | ||||| ||||| |||||||||||||||||||||| ||||| Sbjct 1085 ATCTCGGGAAGATGAT--T-TGTTTTCGTTAGGGTGTTCCAAGAAGCAGGCGATTATCAA 1141 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66816925395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5