BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476040 Length=1257 Score E Sequences producing significant alignments: (Bits) Value AT1G69160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1816 0.0 > AT1G69160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 173 Blast hits to 172 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 33; Plants - 84; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink). | chr1:26000214-26001588 FORWARD LENGTH=1375 Length=1375 Score = 1816 bits (983), Expect = 0.0 Identities = 1168/1254 (93%), Gaps = 25/1254 (2%) Strand=Plus/Plus Query 1 ATCATTCCTTAGCAACTTGTTCCTCATTCCCCGCAAATCAAGCATAGAAAGAGATACTCT 60 |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1 ATCATTCCCTAGCAACTTGTTCCTCATTCTCCGCAAATCAAGCATAGAAAGAG--ACTCT 58 Query 61 T-G-GATCATCCAAGTATCCGATTCTCAAACCGTAAAAATATAATGTCCATGAAAGGGAT 118 | | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 59 TGGAGATCATCCAAGTATCCGATTCTCAGACCCTAAAAATATAATGTCCATGAAAGGGAT 118 Query 119 CTCATCAGCAGAGCCAGATAAGCTCTCGAGGAGAATATCTTTGACCAACAAGCGCAATTC 178 ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 119 CTCATCAGCAGAGTCAGATAAGCTCTCTAGGAGAATATCTTTGACCCACAAGCGCAATTC 178 Query 179 CGAAGAGCTTGACGTGTTTGAGGCCGCAGTGTACTTCGGCTACAATGAAGCCTCCTCTGG 238 ||||||||||||||||||||| || || ||||||||||||||||||||||||||||| || Sbjct 179 CGAAGAGCTTGACGTGTTTGAAGCTGCCGTGTACTTCGGCTACAATGAAGCCTCCTCCGG 238 Query 239 TGACCATAGACCTACACAAAAGTATGGCTATAACGGAGCGAGAGAGGAGAATCCTAGGCG 298 ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 239 TGACCATGGACATACACAAAAGTATGGCTATAACGCAGCGAGAGAGGAGAATCCGAGGAG 298 Query 299 ATGGGGAATATTAGGAGGAGGAGGAAGAAGAATCAGCTTGGATTTGCCTATCAGATGCTC 358 |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 299 ATGGGGAATATT---AGGAGGTGGAAGAAGAATCAGCTTGGATTTGCCTATTAGATGCTC 355 Query 359 AGAACAAGTGCACCATCTTCAACAAGATCATCATGAGAAGCACGAAGTTACAACAATCAA 418 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 AGAACAAGTGTACCATCTTCAACAAGATCATCATGAGAAGCACGAAGTTACAACAATCAA 415 Query 419 GGAGAGACTTGGTAACGTGAGACACAAGCAACCGAGCTCACCAGGTGGGAAAATCGCCAG 478 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 416 GGAGAGACTTGGTAACGTGAGACACAAGCAACCGAGTTCACCAGGTGGGAAAATCGCCAG 475 Query 479 CTTCTTGAACTCCTTGTTCCATCAAGCAAGTTCGAAGAAGAACAAATCAAAGTCAAAGTC 538 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 476 CTTCTTGAACTCCTTGTTCCATCAAGCAGGTTCGAAGAAAAACAAATCAAAGTCAAAGTC 535 Query 539 AAAGACAAAGCCAACGGATCCAAAAGTggaagaggagatccctggaggaggatggatgag 598 ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 536 AAAGACAAAGCCAACAGATCCAGAAGTGGAAGAGGAGATCCCCGGAGGAGGATGGATGAG 595 Query 599 gaggaggagAAGAAGCAGTATCAGCCATTTCTTGAGCTCAAGCAGATCTAATTCAaccac 658 ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| || Sbjct 596 GAGGAGGAGGAGAAGCAGTATCAGCCATTTCTTTAGCTCAAGCAGATCTACTTCAACAAC 655 Query 659 caccaccaccacGGCATCATCATCATCAAAATCTCTGATGTCGTCTTCAAGCTCGGGTTT 718 |||||| |||||||| |||||||| |||||||||||||| || || |||||||||||||| Sbjct 656 CACCACTACCACGGCGTCATCATCTTCAAAATCTCTGATTTCCTCATCAAGCTCGGGTTT 715 Query 719 CAGAACTCCTCCTCCTTATTTGAACACTCCCACCAAGAACTACAAGCAGTTCTTGAACTA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CAGAACTCCTCCTCCTTATTTGAACACTCCCACCAAGAACTACAAGCAGTTCTTGAACTA 775 Query 779 CACTTCTGCCACAAAACAAGTGGGAGAAGAGGAAAAGAAGACCAACAAAGAGTTCTCATG 838 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || Sbjct 776 CACTTCTGCCACAAAACAAGTGGGAGAAGAGGAAACTAAGACCAACAAAGAGTACTCTTG 835 Query 839 GCTGGACGAGAAACTCAAGGTGATGGAGAGCCTCTCGGAGAATCAGAGGATTTGGGCtga 898 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 836 GCTGGACGAGAAACTCAAGGTGATGGAGAGCCTCTCGGAGAATCAGAGGATTTGGTCGGA 895 Query 899 tgatga------cgatgatgatcggagaataaggagagagggagatgatgatggaatgga 952 |||||| |||||||||| ||||||||| |||||| ||||| |||||||||||||| Sbjct 896 TGATGAAGATATCGATGATGATAGGAGAATAAAGAGAGAAGGAGAGGATGATGGAATGGA 955 Query 953 gagtgatTCAAGTTCTGATCTCTTCGAGTTGCAAAACTACGAGTTGTCTCGTGGAGGCTT 1012 |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| Sbjct 956 GAGTGATTCAAGTTCTGATCTCTTCGAGTTGCAAAATTACGAATTATCTCGTGGAGGCTT 1015 Query 1013 ACCAGTCTACGAGACTACCAATGTAGCTAACATCAACAACACTCATATATAATCAAAACT 1072 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1016 GCCAGTCTACGAGACTACCAATGTAGCTAACATCAACAAGACTCATATATAATTTAAACT 1075 Query 1073 CTCT-GAGTGTCAAAAACTCCATCAGATCTTGGTAATAACACCCATAAAACAAATTGTTT 1131 ||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1076 ATCTTGAGTGTCATCAACTCCATCAGATCTTGGTAATGACACCCATAAAGCAAATTGTTT 1135 Query 1132 T-TTCAGATTTGTTCTTGTCTGATTGTTCTTCAGTTATATGTAATTCTTTTGGTTTTCTT 1190 | ||| ||||||||||||||||||||||| | |||||||||| || || ||||| ||| Sbjct 1136 TCTTC-GATTTGTTCTTGTCTGATTGTTCATAAGTTATATGT--TT-TTG-GGTTT-CTT 1189 Query 1191 GGATTTGTTTGTGGAAGCTTTAATGAAtttttttttttCTGTATGAGATT-TTT 1243 |||||||||||||||||||||||||| | ||||||||| |||||||||| ||| Sbjct 1190 GGATTTGTTTGTGGAAGCTTTAATGA-TATTTTTTTTT--GTATGAGATTATTT 1240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61796870895 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5