BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476066
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69390.1 | Symbols: ATMINE1, MINE1, ARC12 | homologue of bac... 1447 0.0
> AT1G69390.1 | Symbols: ATMINE1, MINE1, ARC12 | homologue of bacterial
MinE 1 | chr1:26084635-26086481 FORWARD LENGTH=973
Length=973
Score = 1447 bits (783), Expect = 0.0
Identities = 861/899 (96%), Gaps = 3/899 (0%)
Strand=Plus/Plus
Query 1 GAAGAGTCGTCGTAATCTCATCTCTCTTTTTAACTGAGACGAAAAAGATTCGCTTCTCCG 60
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 3 GAAGAGTCGTCGTAATCTCATTTCTC-TTTTAACTGAGACGAAAAAGATTCACTTCTCCG 61
Query 61 GCGAACAAATTCAACTTTCTCGTTAATGGCGATGTCTTCTGGAACTCTCAGGATCTCTGC 120
|||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 62 GCGAGCAATTTCAAGTTTCTCGGTAATGGCGATGTCTTCTGGAACTCTCAGGATCTCTGC 121
Query 121 GACCTTAGTATCTCCTTATCATAACCACCACCCTAATCGCCTCTCACTACCTTCTTCTTC 180
|||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||
Sbjct 122 GACCTTAGTATCTCCTTATCATCATCACCACCGTAATCGCCTCTCATTACCTTCTTCTTC 181
Query 181 TTCCAAGGTTGATTTCACGGGATTCATAAGCAATGGCGCAAACAATTTGGAAACTCAGAA 240
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 182 TTCCAAGGTTGATTTCACGGGATTCATAAGCAATGGCGTAAACAGTTTGGAAACTCAGAA 241
Query 241 ATGTACTCCTGGACTGGCGATCAGCCGCGAAAACACATGTGGTCATGTGAAGGTTTTTGC 300
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||
Sbjct 242 ATGTACTCCTGGACTGGCGATCAGCCGCGAAAACACACGAGGTCAGGTGAAGGTTCTTGC 301
Query 301 AAGGAACACTGGAGACTATGAACTATCACCAAGCCCAGCTGAGCAAGAGATAGAGAGCTT 360
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 302 AAGGAACACCGGAGACTATGAACTATCACCAAGCCCAGCAGAGCAAGAGATAGAGAGCTT 361
Query 361 TCTCTATAATGCCATCAACATGGGTTTCTTTGACAGGTTAAACTTGGCTTGGAAGATAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCTCTATAATGCCATCAACATGGGTTTCTTTGACAGGTTAAACTTGGCTTGGAAGATAAT 421
Query 421 ATTCCCATCACACGCATCAAGAAGAAGCTCCAACGCAAGAATCGCAAAGCAGCGGCTCAA 480
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 422 ATTCCCATCTCACGCATCAAGAAGAAGCTCCAACGCAAGAATTGCAAAGCAGCGGCTCAA 481
Query 481 GATGATCCTATTCTCGGACAGGTGTGATGTTAGTGACGAAGCTAAAAGGAAAATCGTCAA 540
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GATGATCCTCTTCTCCGACAGGTGTGATGTTAGTGACGAAGCTAAAAGGAAAATCGTCAA 541
Query 541 CAACATTATACACGCACTGTCGGATTTCGTAGAGATAGAATCAGAGGAAAAGGTTCAGCT 600
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 542 CAACATTATCCATGCACTGTCGGATTTCGTAGAGATAGAATCAGAGGAAAAAGTTCAGCT 601
Query 601 AAACGTTTCCACGGACAGTGACCTTGGGACCATTTACTCGGTCACGGTGCCTGTTAGGAG 660
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 602 AAATGTTTCCACGGACGGTGACCTTGGGACCATTTACTCGGTCACGGTGCCTGTTAGAAG 661
Query 661 GGTGAAACCAGAGTACCAAGACGTGGACGAGGCTGGAACCATAACCAATGTGGAATACAA 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 662 GGTGAAACCAGAGTACCAAGACGTGGACGAGGCTGGAACCATAACCAACGTGGAATACAA 721
Query 721 AGATACTCGTGATGGTTCTGTCGATGTCAGGTTCGATTTTTATGTTCCAGAGTAATGAGA 780
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 722 AGATACCCGTGATGGTTCTGTCGATGTCAGGTTCGATTTTTATGTTCCAGAGTGATGAAA 781
Query 781 AGGCTCAGTCTTAGATTTATTTCCTGGATAGTATCTTGTCTGTTTGGTGTTGATGTTCTT 840
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 782 AGGCACAGTCTTAGATTTATTTGCTGGATAGTATCTTGTCTGTTA--TGTTGATGTTCTT 839
Query 841 CAAGTTTAGTCTGGAGGGAACAAAGACAGTTTCTTGACACTCCCCATGTATATATATAT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAAGTTTAGTCTGGAGGGAACAAAGACAGTTTCTTGACACTCCCCATGTATATATATAT 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5