BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476070
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69420.2 | Symbols: | DHHC-type zinc finger family protein ... 2996 0.0
> AT1G69420.2 | Symbols: | DHHC-type zinc finger family protein
| chr1:26093196-26096907 FORWARD LENGTH=2064
Length=2064
Score = 2996 bits (1622), Expect = 0.0
Identities = 1752/1816 (96%), Gaps = 4/1816 (0%)
Strand=Plus/Plus
Query 316 AGCA-TTCTTCTTAGAGGAGATATGAGGAAACATGGATGGCAACTTCCTTACCATCCTCT 374
|||| |||||||| ||||| | |||||||||||||||||||| ||||| |||||||||||
Sbjct 82 AGCATTTCTTCTT-GAGGAAAAATGAGGAAACATGGATGGCAGCTTCCATACCATCCTCT 140
Query 375 TCAGGTGGTGGCTGTTGCTGTGTTCTTGGCTTTAGGGTTTGCTTTCTATGTCTTCTTTGC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TCAGGTGGTGGCTGTTGCTGTGTTCTTGGCTTTAGGGTTTGCTTTCTATGTCTTCTTTGC 200
Query 435 TCCATTTGTTGGGAAGAAGATTCATCAGTACATTGCGATGGGCATTTACACTCCTCTGAT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCCATTTGTTGGGAAGAAGATTCATCAGTACATTGCGATGGGCATTTACACTCCTCTGAT 260
Query 495 TACGTGTGTGGTTGGACTGTATATATGGTGTGCGGCTTCGGACCCTGCAGACCGTGGAGT 554
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 261 TACGTGTGTGGTTGGACTGTATATATGGTGTGCGGCTTCAGATCCTGCAGACCGTGGAGT 320
Query 555 TTTCCGGTCGAAGAAGTACCTTAAAATTCCTGAAAATGGGAAATTTCCTCTATCAAAGGA 614
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 321 TTTCCGGTCTAAGAAGTACCTTAAAATTCCTGAAAATGGGAAATTTCCTCTAGCAAAGGA 380
Query 615 TACAAAAGATGGATGTGGATCAGCTACAGGTGGTGCTAAATCTCGTGATGGAACTTGTGT 674
|| ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 381 TATAAAAGATGGATGTGGATCAGCTACAGGTGGTGCTAAATCTCATGATGGCACGTGTGT 440
Query 675 ACAGGATCCAGAAAATGAAACTAACAAGAAACTGGAGTCATCAGAAAGATCTTCTCTCCT 734
| ||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 441 AGAGGATACAGAAAATGGAAGTAACAAGAAATTGGAGTCATCAGAAAGATCTTCTCTCCT 500
Query 735 GCGTTTGCTCTGCTCTCCTTGTGCATTGCTCTGTAGTTGTTGCAGTGGAAGAGATGAATC 794
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 501 GCGTTTGCTCTGCTCTCCTTGTGCATTGCTATGTAGTTGTTGCAGTGGAAAAGATGAATC 560
Query 795 TTCTGAGCAGATGAGTGAGGATGGAATGTTTTATTGCAGTCTGTGTGAAGTTGAGGTCTT 854
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 561 TTCTGAGCAGATGAGTGAGGATGGGATGTTTTATTGCAGTCTGTGTGAAGTTGAGGTCTT 620
Query 855 CAAATACAGCAAGCATTGCAGAGTTTGTGACAAATGTGTGGACCGTTTTGATCATCACTG 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CAAATACAGCAAGCATTGCAGAGTTTGTGACAAATGTGTGGACCGTTTTGATCATCACTG 680
Query 915 CAGGTGGCTAAACAACTGCATCGGCAAGCGGAATTACCGAAAATTCTTTAGCCTTATGGT 974
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 681 CAGGTGGCTAAACAACTGCATTGGCAAGCGGAATTACCGAAAATTCTTCAGTCTTATGGT 740
Query 975 ATCAGCTAtttttttGCTCATTATGCAATGGTCAACTGGGATTTTTGTGCTGGTATTATG 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATCAGCTATTTTTTTGCTCATTATGCAATGGTCAACTGGGATTTTTGTGCTGGTATTATG 800
Query 1035 TTTGCTCCGAAGAAACCAATTTAATGCAGACATTGCCCTGAAGTTGGGAAGCAGCTTCTC 1094
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TTTACTCCGAAGAAACCAATTTAATGCAGACATTGCCCTGAAGTTGGGAAGCAGCTTCTC 860
Query 1095 GCTAATTCCATTTGTTATAGTCGTTGGTGTCTGCACTGTATTAGCAATGCTGGCAACGTT 1154
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 861 GCTAATTCCATTTGTTATAGTTGTTGGTGTCTGTACAGTATTAGCAATGCTGGCAACGTT 920
Query 1155 ACCACTTGCTCAGCTTTTCTTCTTCCATATTCTTCTCATTAAGAAGGGAATCAGTACATA 1214
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 921 ACCACTTGCTCAGCTTTTCTTCTTCCACATTCTTCTCATTAAGAAGGGAATCAGTACATA 980
Query 1215 CGATTACATAGTTGCACTTAGGGAGCAAGAGCAAGAGCTAGAAGCTGGAGGTGGTCAACA 1274
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 981 CGACTACATAGTTGCGCTTAGGGAGCAAGAGCAAGAACTAGAAGCTGGAGGCGGTCAACA 1040
Query 1275 GAGTCCTCAAATGTCAATGATCAGCTCATTTACTGGACTAAGCAGTGCAAGCTCCTTTAA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1041 GAGTCCTCAAATGTCAATGATCAGCTCATTTACTGGACTAAGCAGTGCAAGCTCCTTCAA 1100
Query 1335 TACATTTCATCGTGGGGCATGGTGCACACCACCACGTTTGTTTCTTGAGGATCAGTTTGA 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TACATTTCATCGTGGGGCATGGTGCACACCACCACGTTTGTTTCTTGAGGATCAGTTTGA 1160
Query 1395 CGTGGTCCCTCCAGAGAATGCTTCTGTAAGTTCATATGGGAAGAAGTCAGTGGTTGAGGA 1454
||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1161 CGTAGTCCCTCCAGAGAATGCTTCTGTAAGTTCATATGGGAAGAAGTCTGTTGTAGAGGA 1220
Query 1455 ACGCGTCAAGAAGAAGCCCCAACCTGTGAAGATCAGTCCATGGACTCTAGCACGTCTCAA 1514
||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1221 ACGTGTCAAGAAGAAGCCCCAACCTGTGAAGATTAGTCCTTGGACTCTAGCTCGTCTCAA 1280
Query 1515 TGCAGAAGAAGTTTCAAAAGCAGCAGCAGAAGCAAGAAAGAAATCCAAAATAATTCAGCC 1574
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1281 TGCAGAAGAAGTTTCAAAAGCAGCAGCAGAAGCAAGAAAGAAATCCAAAATAATCCAGCC 1340
Query 1575 TGTGGCGAGACGGGAAAATCCATTTGTTGGCTTAGAAGCAAGCAGCAGCTTTGGTAGCAG 1634
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1341 TGTGGCGAGACGGGAAAATCCATTTGTTGGCTTAGAAGCAAGCAGCAGCTTCGGAAGCAG 1400
Query 1635 CGGCCGTAGAATGTTCCCAGCAAAATTTGAATCTGTTAATAATAGCGGGAAGCAGCGAAG 1694
|||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||
Sbjct 1401 TGGCCGTAGAATGTTCCCAACAAAATATGAAGGTGTTAATAATAACGGGAAGCAGCGAAG 1460
Query 1695 GCAATCTAAA-CGCATACGGTTACCAGCTGAACTACCTCTAGAACCGCTGATGAATGTTC 1753
|||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1461 GCAATC-AAAGCGCATACGGTTACCAGCAGAACTACCTCTAGAACCGCTGATGAATGTTC 1519
Query 1754 AGACAAAAGCAGCAATGGAGACATCAACTAGTTCAGGGCTAGCTCCACTTCAGCTAGAAG 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 AGACAAAAGCAGCAATGGAGACATCAACTAGTTCAGGGCTAGCTCCACTTCAGCTAGAAG 1579
Query 1814 CAAGAAGCGCGTTTCAGACAAGCCGAGCAATGTCAGGGTCTGGTAATGTTATGGTGACCT 1873
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1580 CAAGAAGCGCGTTTCAGACAAGCCGGGCAATGTCAGGGTCTGGTAATGTTATGGTGACAT 1639
Query 1874 CTTCACCAGAAAGCAGCTTAGACTCGCACGACATTCACCCGTTTAGAGTTTCGTCTGAAG 1933
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1640 CTTCACCAGAGAGCAGCTTAGACTCGCATGACATTCACCCGTTTAGAGTTTCGTCTGAAG 1699
Query 1934 CAGAGGATGCAGCACAGCTCAATGGGTTTTCTTCAGCTGTTGGTCTGATGGGTCAACAGA 1993
||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1700 CAGAGGATGCAGCGCAGCTTAATGGGTTCTCTTCTGCTGTTGGTCTGATGGGTCAACAGA 1759
Query 1994 GAGGacaacaacaacaacaacaacTATCAATGATGATGATGCCATTGTCAAGGTCTACAA 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 GAGGACAACAACAACAACAACAACTATCAATGATGATGATGCCATTGTCAAGGTCTACAA 1819
Query 2054 GTGATGGTTATGATGCATCTGGTGGAGAAGACAGTGATCAGGTTCCTTCTAGAAACATCC 2113
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 GTGATGGCTATGATGCATCTGGTGGAGAAGACAGTGATCAGGTTCCTTCTAGAAACATCC 1879
Query 2114 ACAAATCAAGATGAGA 2129
||||||||||||||||
Sbjct 1880 ACAAATCAAGATGAGA 1895
Score = 130 bits (70), Expect = 7e-29
Identities = 98/111 (88%), Gaps = 3/111 (3%)
Strand=Plus/Plus
Query 2143 TGGCTGCTGCATTCGATCAAGAAAAAGTCAACATTTGAGGATCTTGAAGATATTATTACA 2202
|||||||||| ||| |||| ||| ||||||||||||||||||||||||| ||| | | |
Sbjct 1957 TGGCTGCTGCCTTCTATCAGGAAGAAGTCAACATTTGAGGATCTTGAAGGTATAAA-A-A 2014
Query 2203 GTGCCTGCCAAGAGCTCTTAGGAGAAGAGCACCAGAGACTTTTGTGAGTTC 2253
|||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 2015 -TGCCTGCCAAAAGCTCTTAGGAGAAGAGCACCAGAGACTTTTGAGAATTC 2064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115913058405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5