BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476091
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69570.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 2438 0.0
AT1G69572.1 | Symbols: | other RNA | chr1:26161599-26162761 FO... 1467 0.0
> AT1G69570.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:26161528-26163496 REVERSE LENGTH=1709
Length=1709
Score = 2438 bits (1320), Expect = 0.0
Identities = 1596/1719 (93%), Gaps = 59/1719 (3%)
Strand=Plus/Plus
Query 1 AGCGTGAAAAAGATCTCAAAATGCCCACTTTCTTCACAAACATGTGGctctcatatttct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AGCGTGAAAAAGATCTCAAAATGCCCACTTTCTTCACAAACATGTGGCTCTCCTATTTCT 60
Query 61 acatgtctctctctctattctgacgtgt-a------ct-tt--tctct--cttct-ATGC 107
|||||||||||||||||||||||||||| | || || ||||| ||||| ||||
Sbjct 61 ACATGTCTCTCTCTCTATTCTGACGTGTAATTTTCTCTCTTCCTCTCTCCCTTCTAATGC 120
Query 108 ACTATCTATCGTCATTAATACCAACCTCAAGCCCCTTCTTGTTTTCTCTTCATACTCttt 167
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 121 ACTATCTATCGTCATTAATACCAACCTCAAG-CCC--CTTGTTTTCTCTTCATGCTCTTT 177
Query 168 tttt-tt-CCTCCGATCTTCATAGAG-aaaaaaaa-CAGAGGAAACCATTTATTAGACCT 223
|||| || |||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 178 TTTTCTTCCCTCCGATCTTCATAGAGAAAAAAAAACCAGAGGAAACCATTTATTAGACCT 237
Query 224 TCATATTTCTAGAAGTTTCATAATTAGTTATGTCTAAATCTATAGATAGGGAGATAAAGT 283
|||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 238 TCATATCTCTAGAACTTTCATAATTAGTTATGTCTAAATCTAGAGATACGGAGATAAAGT 297
Query 284 TGTTTGGGAGGACAATCACATCTCTTTTAGATGTGAATCGTTATGATCCATCGTCTTTGT 343
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 298 TGTTTGGGAGGACAATCACATCTCTTTTAGATGTGAATTGTTATGATCCGTCGTCGTTGT 357
Query 344 CCCCTGTTCACGATGTTTCTTCTGATCAAAGCAAGGAGGATTCGTCATCTTCTTCTTCTT 403
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 358 CCCCTGTTCACGATGTTTCTTCTGATCCAAGCAAGGAGGATTCGTCTTCTTCTTCATCTT 417
Query 404 CTTGTTCTCCAACTATTGGACCAATCAGGGTTCCGG-CAAATAATAGTGATG-AAGAGAG 461
|||||||||||||||||||||||||||||||||||| ||| || ||||| | |||||||
Sbjct 418 CTTGTTCTCCAACTATTGGACCAATCAGGGTTCCGGTTAAA-AAAAGTGA-GCAAGAGAG 475
Query 462 TAACAGATTCAAAGATCCATACATATTATCAGATCTAAACGAACCACCAAAAGCAGTATC 521
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 476 TAACAAATTCAAAGATCCATATATATTATCCGATCTAAACGAACCACCAAAAGCAGTATC 535
Query 522 TGAGATTTCATCACCAAGAAGTTCCAAGAACAATTGTGATCAACAGAGCGAGAT-----C 576
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 536 TGAGATTTCATCACCAAGAAGTTCCAAGAACAACTGTGATCAACAGAGCGAGATCACAAC 595
Query 577 -ACGAC-A--ACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCAGACAA 632
|| || | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 596 AACAACTACCACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCGGACAA 655
Query 633 GCTTCTTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 692
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCTTATTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 715
Query 693 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 775
Query 753 ATCTATGAGGAACGTTCCCGTTGGCTCAGGCCGTCGCAAGAACAAAGGATGGGCTTCTTC 812
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 776 ATCTATGAGGAACGTTCCTGTTGGCTCAGGTCGTCGCAAGAACAAAGGATGGCCTTCTTC 835
Query 813 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCCGGGACGATCCT 872
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCGGGGACGATCCT 895
Query 873 TAGCTTCGGTTCTTCGGAATCTTCGGTGACAGAGGCTGGTAAGCATCAATCAAGAGATAC 932
||| |||||||||||||| |||||||| |||||| ||||||||||||| ||| | |||||
Sbjct 896 TAGTTTCGGTTCTTCGGAGTCTTCGGTTACAGAGACTGGTAAGCATCAGTCAGGTGATAC 955
Query 933 AACAAAAATAAGCGCTGATTCAGTTTCCCAAGAACGCAAAACCTACCAAGGGTTTCTTCC 992
| |||| ||||| |||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 956 AGCAAAGATAAGTGCTGATTCAGTTTCTCAAGAAAATAAAAGCTACCAAGGGTTTCTTCC 1015
Query 993 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 1075
Query 1053 TCCTAATGCTAGTTTCTACCCTGTCCCCTTCTATTGGGGATGCACGGTTCCGATATACCC 1112
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1076 TCCTAACGCTAGTTTCTACCCTGTCCCCTTCTACTGGGGATGCACGGTTCCGATATACCC 1135
Query 1113 TACCTCCGATACTTCACCGTGTTTAGGAAAACGATCAAGAGATCAAACTGAAGGAAGAAT 1172
|||||| || |||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1136 TACCTCAGAGACTTCATCATGTTTAGGAAAACGGTCAAGAGATCAAACTGAAGGAAGAAT 1195
Query 1173 CAATGATACTAATACAACGATAACTTCTACAAGAGCAAGATTGGTTTCAGAATCTCTTAG 1232
|||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1196 CAATGATACTAATACAACAATAACTACTACAAGAGCAAGATTGGTCTCAGAATCTCTTAG 1255
Query 1233 AATGAATAGCGAAGCTACTAAGAGCGCGGTGTGGTCTAAGTTACCGACAAAACCCGAGaa 1292
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1256 AATGAATATCGAAGCTAGTAAGAGCGCTGTGTGGTCTAAGTTACCGACAAAACCCGAGAA 1315
Query 1293 aaaaaCGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGTAACAGCAACAGAAG 1352
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1316 AAAAACGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGAAACAGCAACAGAAG 1375
Query 1353 CAGCTTGGTCACTGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCTAGAGC 1412
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TAGCTTGGTCTCCGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCTAGAGC 1435
Query 1413 TATGAACTTCAGGGAGAGCATGCAACAATAATCAGACACTGatatagatatatatatatT 1472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1436 TATGAACTTCAGGGAGAGCATGCAACAATAATCAGACACTAATATAGATATATAT-T--- 1491
Query 1473 CATGAACTGAGAGATTTGAGTTTAGCTAATTGTTACCTTGTGGAAGAAG-------T-T- 1523
||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1492 CATGAACTGAGAGATTTGAGTTTGGCTAATTGTTACCTTGTGGAAGAAGGCAAAGCTGTG 1551
Query 1524 T---T-GTT--GTT-TC-G-AACTAAGAGTAGATATAGTATTTACTGTTTGTACACAAAC 1574
| | ||| ||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1552 TAGATAGTTTTGTTGTTTGGAACTAAGAGTAGATATAGTATTTACTGTT-GTACACAAAC 1610
Query 1575 AGAAATATTTTTGGAGGTGTAGATATTTCTCTCCATTGTGCGATGAAGTTGCAAAATATA 1634
||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1611 AGAGATATTTTTGGAGCTGTAGATATTTCTCTCCATTGTGTGATGAAGTTGCAACATATA 1670
Query 1635 TAAACCTTTAGATTAATAATATCTACGTGATCTATCTTG 1673
|||||||||||||||||| | |||||||||||||||||
Sbjct 1671 TAAACCTTTAGATTAATA-T--CTACGTGATCTATCTTG 1706
> AT1G69572.1 | Symbols: | other RNA | chr1:26161599-26162761
FORWARD LENGTH=1064
Length=1064
Score = 1467 bits (794), Expect = 0.0
Identities = 903/955 (95%), Gaps = 9/955 (1%)
Strand=Plus/Minus
Query 462 TAACAGATTCAAAGATCCATACATATTATCAGATCTAAACGAACCACCAAAAGCAGTATC 521
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1064 TAACAAATTCAAAGATCCATATATATTATCCGATCTAAACGAACCACCAAAAGCAGTATC 1005
Query 522 TGAGATTTCATCACCAAGAAGTTCCAAGAACAATTGTGATCAACAGAGCGAGAT-----C 576
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1004 TGAGATTTCATCACCAAGAAGTTCCAAGAACAACTGTGATCAACAGAGCGAGATCACAAC 945
Query 577 -ACGAC-A--ACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCAGACAA 632
|| || | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 944 AACAACTACCACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCGGACAA 885
Query 633 GCTTCTTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 692
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GCTTATTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 825
Query 693 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 765
Query 753 ATCTATGAGGAACGTTCCCGTTGGCTCAGGCCGTCGCAAGAACAAAGGATGGGCTTCTTC 812
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 764 ATCTATGAGGAACGTTCCTGTTGGCTCAGGTCGTCGCAAGAACAAAGGATGGCCTTCTTC 705
Query 813 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCCGGGACGATCCT 872
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 704 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCGGGGACGATCCT 645
Query 873 TAGCTTCGGTTCTTCGGAATCTTCGGTGACAGAGGCTGGTAAGCATCAATCAAGAGATAC 932
||| |||||||||||||| |||||||| |||||| ||||||||||||| ||| | |||||
Sbjct 644 TAGTTTCGGTTCTTCGGAGTCTTCGGTTACAGAGACTGGTAAGCATCAGTCAGGTGATAC 585
Query 933 AACAAAAATAAGCGCTGATTCAGTTTCCCAAGAACGCAAAACCTACCAAGGGTTTCTTCC 992
| |||| ||||| |||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 584 AGCAAAGATAAGTGCTGATTCAGTTTCTCAAGAAAATAAAAGCTACCAAGGGTTTCTTCC 525
Query 993 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 465
Query 1053 TCCTAATGCTAGTTTCTACCCTGTCCCCTTCTATTGGGGATGCACGGTTCCGATATACCC 1112
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 464 TCCTAACGCTAGTTTCTACCCTGTCCCCTTCTACTGGGGATGCACGGTTCCGATATACCC 405
Query 1113 TACCTCCGATACTTCACCGTGTTTAGGAAAACGATCAAGAGATCAAACTGAAGGAAGAAT 1172
|||||| || |||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 404 TACCTCAGAGACTTCATCATGTTTAGGAAAACGGTCAAGAGATCAAACTGAAGGAAGAAT 345
Query 1173 CAATGATACTAATACAACGATAACTTCTACAAGAGCAAGATTGGTTTCAGAATCTCTTAG 1232
|||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 344 CAATGATACTAATACAACAATAACTACTACAAGAGCAAGATTGGTCTCAGAATCTCTTAG 285
Query 1233 AATGAATAGCGAAGCTACTAAGAGCGCGGTGTGGTCTAAGTTACCGACAAAACCCGAGaa 1292
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 284 AATGAATATCGAAGCTAGTAAGAGCGCTGTGTGGTCTAAGTTACCGACAAAACCCGAGAA 225
Query 1293 aaaaaCGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGTAACAGCAACAGAAG 1352
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 224 AAAAACGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGAAACAGCAACAGAAG 165
Query 1353 CAGCTTGGTCACTGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCT 1407
||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TAGCTTGGTCTCCGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCT 110
Score = 132 bits (71), Expect = 1e-29
Identities = 82/87 (94%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 1517 AGA-AGTTTTGTTGTTTCGAACTAAGAGTAGATATAGTATTTACTGTTTGTACACAAACA 1575
||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 86 AGATAGTTTTGTTGTTTGGAACTAAGAGTAGATATAGTATTTACTGTT-GTACACAAACA 28
Query 1576 GAAATATTTTTGGAGGTGTAGATATTT 1602
|| |||||||||||| |||||||||||
Sbjct 27 GAGATATTTTTGGAGCTGTAGATATTT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5