BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476130
Length=4444
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70060.1 | Symbols: SNL4 | SIN3-like 4 | chr1:26383244-26389... 2564 0.0
AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:... 1035 0.0
> AT1G70060.1 | Symbols: SNL4 | SIN3-like 4 | chr1:26383244-26389916
FORWARD LENGTH=4483
Length=4483
Score = 2564 bits (1388), Expect = 0.0
Identities = 1688/1824 (93%), Gaps = 56/1824 (3%)
Strand=Plus/Plus
Query 2641 GGGCTTAGCAATAGTAATCCAAAACCTAGTGCATTAACCAGTGGAACGGAGGAGTTGAAG 2700
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2693 GGGCTTAGCAATAGTAATCCAAAACC---TGCATTAACCAGTGGAACGGAGGAGTTGAAG 2749
Query 2701 CCGAATCACGTAAATGGGCCACGCGTAGAGATTGGCGACAACCGAGTAATTCCAAATGGG 2760
|| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2750 CCAAATTACGTAAATGGGCCACGCGTAGAGATTGGCGACAACCCTGTAATTCCAAATGGG 2809
Query 2761 ACATTGGCAGAAGGGTTCGCTGGGGAAACCAAAGTCGAAAGAGAGGAGGGTGAACTTTCT 2820
||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2810 ACAGTAGCAGAATGGTTCGCTGGGGAAGCCAAAGTCGAAAGAGAGGAGGGTGAACTTTCT 2869
Query 2821 CCAACAGGAGAGTTTGAGGAAGATAATTTTGCAGTTCATGGAGAGAATGACATGGAGGCT 2880
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 2870 CCAACAGGAGATTTTGAAGAAGATAATTATGCAGTTCATGGAGAGAATGACATGGAGGCT 2929
Query 2881 CTCAGCAAAAGTAAGGAGAATGATGCTACTGCAGATGATGAAGGTGATGCAAGTGCTCCA 2940
|||||||||||||||||||||||||| ||||| | | | ||||||||||||||||
Sbjct 2930 CTCAGCAAAAGTAAGGAGAATGATGCAACTGC-----A-G-A--TGATGCAAGTGCTCCA 2980
Query 2941 AGATCATCAGATGGCAGCGGAAACACATCTCAGAACGGTGATGTTTCTGGAACTGACTCT 3000
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2981 AGATCATCAGATGGTAGCGGAAACACATCTCACAACGGTGATGTTTCTGGAACTGACTCT 3040
Query 3001 GGTGATGGTGAAGATTGTTATCGCGAAGATGATATGGACCATAATAAGGCAGAAAGCGAA 3060
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 3041 GGTGATGGTGAAGATTGTTATCGCGAAGATGATATAGACCATAATAAGGTAGAAAGTGAA 3100
Query 3061 GGTGAGGCTGAAGAAGGTATGTCTGATGCCCAGGATGATACTGAAGGAGATAGGCCTGTG 3120
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 3101 GGTGAGGCTGAAGAAGGTATGTCTGATGGCCATGATGATACTGAAGGAGATATGCCTGTG 3160
Query 3121 TTGTCCATTTCAGTAAAAAACCTGCTACATGTGAAACCTCTTGCAAAGTATGAT-CCTCC 3179
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 3161 TTGTCCATCTCAGTAAAAAACCTGCTACATGTGAAACCTCTTGCAAAGTATG-TCCCTCC 3219
Query 3180 AGCTTTGCGCGATAAGGACAAAGATGATTCTCGGAAGAACTCTCAAGTCTTTTATGGGAA 3239
||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 3220 AGCTTTGTACGATAAGGACAACGATGATTCTCGGAAGAACTCACAAGTCTTTTATGGGAA 3279
Query 3240 TGATTCTTTCTATGTTCTTTTCAGGCTTCATCAGATTTTGTATGACAGAATATTATCAGC 3299
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3280 TGATTCTTTTTATGTTCTATTCAGGCTTCATCAGATTTTGTATGACAGAATATTATCAGC 3339
Query 3300 AAAAGTCAATTCATCATCTCCAGATAGAAAGTGGAAGACCTCAAATCCAACAAACCCCGC 3359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3340 AAAAATCAATTCATCATCTCCAGATAGAAAGTGGAAGACCTCAAATCCAACAAACCCCGC 3399
Query 3360 TGATTCGTACGCCAGCATTATGGATGCTCTCTACAATTTGCTCGATGGTACATCCGATAA 3419
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 3400 TGATTCGTACGCCAGAATCATGGATGCTCTCTACAATTTGCTCGATGGCACATCCGATAA 3459
Query 3420 TTCGAAGTTTGAAGATGATTGCCGAGCAATTATTGGGACACAGTCATATGTTCTCTTCAC 3479
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 3460 TTCAAAGTTCGAAGATGATTGCCGAGCAATTATCGGGACCCAGTCATATGTTCTCTTCAC 3519
Query 3480 ATTAGACAAACTGATCTACAAGCTCATCAAGCATCTCCAAGGAGTAGCAGCTGATGAGAT 3539
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 3520 ATTAGACAAACTGATCTATAAGCTCATCAAGCATCTCCAAGCAGTAGCAGCTGATGAGAT 3579
Query 3540 GTACAACAAATTACAACAG-TTATATGCTTACGAGAAATCCAGAAAGCCTGAAAAGTTTC 3598
| ||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||
Sbjct 3580 GGACAACAAATTACAACAGCTT-TATGCTTATGAGAAATCCAGAAAGCCTGAGAAGTTTC 3638
Query 3599 TCGATGCTGTTTATTACGAAAATGCTCGTGTGCTTCTTCCCGATGAGGATATATACCGCA 3658
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3639 TGGATGCTGTTTATTACGAAAATGCTCTTGTGCTTCTTCCCGATGAGGATATATACCGCA 3698
Query 3659 TTGAATGTGAACTATCGACACCAAGCAAACTCTCTATTCAGCTTCTGGACTATGGACATG 3718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3699 TTGAATGTGAACAATCGACACCAAGCAAACTCTCTATTCAGCTTCTGGACTATGGACATG 3758
Query 3719 ATAAGCCTGATGTGACATCCATATCCATGGACCCAACTTTTGCAGCTTACCTCCACAATG 3778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3759 ATAAGCCTGATGTGACATCCATATCCATGGACCCAACTTTTGCAGCTTACCTCCACAATG 3818
Query 3779 TATTCCTTTCCTATCAACCTAATGCAAAAGAGAATCCCCGAATCTATTTGAAACGGAATA 3838
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 3819 TATTCCTTTCTTATCAACCTAATGCGAAAGAGAATCCTCGAATCTATTTGAAACGGAATA 3878
Query 3839 AGCGTAAAAATGGTGGTGACGATGAACTCTGCACCACAGATGGAGTTAAGATTATTAACG 3898
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 3879 AGCGTAAAAATGGTGGTGACGATGAACTCTGCACCACGGATGAAGTTAAGATTATTAATG 3938
Query 3899 GTTTGGAATGTAAGATAACCTGCAGTTCTTCAAAGGTCTCCTATGTATTAGACACAGAGG 3958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3939 GTTTGGAATGTAAGATAACCTGCAGTTCTTCAAAGGTCTCCTATGTATTAGACACCGAGG 3998
Query 3959 ATGTGTTACATCGTTCTAAGAGGAGGAAATTTTTGAACCAAAGCGGTTTACCACTCAG-A 4017
||||||| |||||| |||||||||||||| |||| ||||||||||||||||| ||| | |
Sbjct 3999 ATGTGTTGCATCGTGCTAAGAGGAGGAAACTTTTAAACCAAAGCGGTTTACCCCTC-GCA 4057
Query 4018 CAGGATTCTGTTTGCAGTGGTTCTTTAATCAGGCAAAGGAGAATACAAAGATACCAAAAA 4077
|| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 4058 CATGATTCTGTTTGCAGTGGTTCTTTAATTAGGCAAAGGAGAACACAAAGATATCAAAAA 4117
Query 4078 CTTCTCACTGGCCAATAACATCT--CACCTACCACCAGCAAACACTCGGGAATAGAGCAA 4135
|||||||| || |||| |||||| ||| ||| ||||| |||| ||||||||||||||||
Sbjct 4118 CTTCTCACCGGTCAATGACATCTGTCACTTACTACCAGAAAACGCTCGGGAATAGAGCAA 4177
Query 4136 CGTCGCACTCTTTTG-GAGACAAAAAGGTTGCCATACTCAGCGTTGAGCTTTGTCAGAAG 4194
| ||||||| ||||| |||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 4178 CTTCGCACT-TTTTGAGAGATAAAA-GGTTGCCATACTCAGCATTGAGCTTTGTCAGAAG 4235
Query 4195 AGAGGAAATGTAAGATGGCTCTTAATTACTTGTGTTACTGCCTCTGGTCCCTGTTGTATC 4254
||| |||||||||||||||||||| || || || | |||||||||||||||||||||||
Sbjct 4236 AGAAGAAATGTAAGATGGCTCTTACTT-CT-GT-T-ACTGCCTCTGGTCCCTGTTGTATT 4291
Query 4255 CTCACAGAAAATAAAAAGGGAGGGAGGGG-AAGATCGAAGGA-T--TAA-C---T----- 4301
||||||||||||||||||||||||||||| || ||||||||| | ||| | |
Sbjct 4292 CTCACAGAAAATAAAAAGGGAGGGAGGGGGAAAATCGAAGGAATACTAAACGGATTAACT 4351
Query 4302 GCCCAAGCCTTCAAGTCTTGTTTCCCATAATTGTGTACATAAACTTTTTGTATGTTGTTG 4361
||||||||||| |||||||||||||||| | ||||| |||| | |||||||||||||
Sbjct 4352 GCCCAAGCCTTGAAGTCTTGTTTCCCAT--T-GTGTATATAAGCATTTTGTATGTTGT-- 4406
Query 4362 TAACATTA-TTAACTCAAATTTCTTCTTTGTTAACTCCTATTCTTTCCAACATTAATCAT 4420
||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||
Sbjct 4407 -AACATTAATTAA---AA-TTTCTTCTTTGTTG-CTCCTATTCTTTCCAACATTAATCAT 4460
Query 4421 GCACCTCAATGAAGAATTTGTTCT 4444
| | |||||| ||||||||||
Sbjct 4461 -C---TGAATGAAAAATTTGTTCT 4480
Score = 2242 bits (1214), Expect = 0.0
Identities = 1348/1411 (96%), Gaps = 16/1411 (1%)
Strand=Plus/Plus
Query 1204 GTGACTATAG-AATCCTTGTGGAGTGAAGGCAAATGTCCTCAACCTACTAAGTCACAGGA 1262
||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1286 GTGTCTA-AGAAATCCTTGTGGAGTGAAGGCAAATGTCCTCAACCTACTAAGTCACTTGA 1344
Query 1263 CAAAGATACAGACCGAGAACGTGAAAAGATTGAAAGGTATAGAGAAAGAGACCGCGAGAA 1322
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1345 CAAAGATACAGACCGAGAACGTGAGAAGATTGAAAGGTATAGAGAAAGAGACCGTGAGAA 1404
Query 1323 GGAGAGGCTTGAAAAGGCGGCAGCGAGTCAGAAATGGGCTAAACCTATCAGTGAGCTAGA 1382
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1405 GGAGAGGCTTGAAAAGGTGGCAGCGAGTCAGAAATGGGCTAAACCTATCAGTGAACTAGA 1464
Query 1383 TCTCTCGAACTGTGAACAGTGTACACCTAGTTATCGGCGACTTCCAAAGAATTATCCAAT 1442
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1465 TCTCTCGAACTGTGAACAGTGCACACCTAGTTATCGGAGACTTCCAAAGAATTATCCAAT 1524
Query 1443 TCCTATAGCAAGCCAAAAAATGGAGATTGGTAGCCAAGTGCTTAATGATCATTGGGTCTC 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 TCCTATAGCAAGCCAAAAAATGGAGATTGGTAGCCAAGTGCTTAATGATCATTGGGTCTC 1584
Query 1503 CGTCACTTCAGGAAGCGAAGATTATTCATTTAAACACATGCGTAAGAACCAGTATGAAGA 1562
|||||||||||||| ||||| |||||||| ||||||||||| |||||||| || |||||
Sbjct 1585 TGTCACTTCAGGAAGTGAAGACTATTCATTCAAACACATGCGCAAGAACCAATACGAAGA 1644
Query 1563 GAGCCTATTCAAATGTGAAGATGACAGGTTTGAGCTAGACATGTTATTAGAGTCTGTGAT 1622
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1645 GAGCCTATTCAAATGTGAAGATGACAGGTTCGAGCTAGACATGTTATTAGAGTCTGTGAT 1704
Query 1623 CTCTGCTACGAATAGAGTGGAAGAGTTATTGTCTAAGATTAACAGTAATGAATTGAAAAC 1682
||| ||||| ||| |||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 1705 CTCGGCTACTAATCGAGTTGAAGAGTTATTGGCAAAGATTAACAGTAATGAATTGAAAAC 1764
Query 1683 CGACACTCCCATCTGCATCGAGGATCACCTCACAGCTCTAAACCTAAGATGCATAGAACG 1742
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 CGATACTCCCATCTGTATCGAGGATCACCTCACAGCTCTAAACCTAAGATGCATAGAACG 1824
Query 1743 GTTATATGGTGACCACGGGCTCGATGTGTTGGATTTGTTAAAGAAGAATGCATATCTTGC 1802
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GTTATACAGTGACCATGGGCTCGATGTGTTGGATTTGTTAAAGAAGAATGCATATCTTGC 1884
Query 1803 TTTACCGGTAATACTAACCCGTTTGAAACAAAAGCAAGAAGAGTGGGCAAGGTGTCGTAC 1862
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1885 TTTACCGGTAATACTAACCCGTTTGAAACAAAAGCAAGAAGAATGGGCAAGGTGTCGTAC 1944
Query 1863 TGAGTTTAACAAAGTCTGGGCTGACATATATACAAAGAACTACCACAGGTCGCTTGATCA 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 TGAGTTTAACAAAGTCTGGGCTGACATATATACAAAGAACTACCACAGGTCGCTTGATCA 2004
Query 1923 TCGCAGTTTTTATTTCAAACAGCAGGATTCAAAGAATCTGAGTACAAAAGCATTGCTGGC 1982
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2005 TCGCAGTTTTTATTTCAAACAGCAGGATTCAAAGAATCTGAGCACAAAAGCATTGCTGGC 2064
Query 1983 AGAGATAAAAGAGATCTCTGAAAAGAAGCGAGGCGAAGATGATGCACTTCTTGCTCTTGC 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 AGAGATAAAAGAGATCTCTGAAAAGAAGCGAGGCGAAGATGATGCACTTCTTGCTCTTGC 2124
Query 2043 GGCTGGAAATAGACGAACCATTTCTTCCAATATGAGTTTTGATTATCCGGATCCTGATCT 2102
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 GGCTGGAAATAGACGAACTATTTCTTCCAATATGAGTTTTGATTATCCGGATCCTGATCT 2184
Query 2103 TCACGAAGATTTGTATCAGCTGATCAAGTATTCATGTGGAGAAATGTGTTCAACAGAACA 2162
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2185 TCACGAAGATCTGTATCAGCTGATCAAGTATTCATGTGGAGAAATGTGTTCAACAGAACA 2244
Query 2163 GTTAGATAAGGTAATGAAGGTATGGACAGAATTTTTGGAACCAATATTTGGTGTTCCTTC 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 GTTAGATAAGGTAATGAAGGTATGGACAGAATTTTTGGAACCAATATTTGGTGTTCCTTC 2304
Query 2223 TCGCCCTCAAGGTGCCGAAGACCGAGAAGATGCTGTCAAGTCTACGAACCAAGACCGAGA 2282
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2305 TCGCCCTCAAGGTGCCGAAGACCGAGAAGATGCTGTCAAGTCTACAAACCATGACCGAGA 2364
Query 2283 AGA---------TGCTGTCAGTCCTCAAAATGGAGCTAGTATTGCCAACTCTATGCGTTC 2333
||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2365 AGACCAAGAAGATGCTGTCAGTCCTCAAAATGGAGCTAGTATTGCCAACTCTATGCGGTC 2424
Query 2334 AAATGGCCCTCGAAAAGGAAATGAAAGTAATCAAGTGCGGCAAGCTAGTGAGTTGGATAA 2393
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2425 AAATGGCCCTCGAAAAGTCAATGAAAGTAATCAAGTGCGGCAAGCTAGTGAGTTGGATAA 2484
Query 2394 AGATGTCACTTCTAGTAAAACCTCAGATGTCTTATTATCATGTGACAACAACACTCAGAA 2453
|||||| ||||||||||| |||||||||| ||| |||||||||||||||| | ||||||
Sbjct 2485 AGATGTTACTTCTAGTAAGACCTCAGATGCCTTGTTATCATGTGACAACA-C--TCAGAA 2541
Query 2454 TGATAAAATGCCGAAGAATCTGACCACACCTGACGAAAGA-CCGGAAACCAAACAAGCTG 2512
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 2542 TGATAAAATGCCGAAGAATCTGACCACACCTGACGAAAGAGCCG-AAACCAAACAAGCTG 2600
Query 2513 TTTCTATTGAATGTGCCCACAACTCAAATGCACTGCCTGTGGATGGATTGTTACCTCAAA 2572
||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 2601 TTTCTATTGAACGTGCCCATAACTCAAATGCACTACCTCTGGATGGATTGTTACCTCAAA 2660
Query 2573 GGAATGGAAAAATCAGCAATTTATCCATTGC 2603
|||||||||||||||||| ||||||| ||||
Sbjct 2661 GGAATGGAAAAATCAGCAGTTTATCCGTTGC 2691
Score = 1692 bits (916), Expect = 0.0
Identities = 1088/1167 (93%), Gaps = 28/1167 (2%)
Strand=Plus/Plus
Query 1 ATGGTTGGAGGAAGTAGTGTGCAGAAGCTAACTACTAATGATGCACTTGCGTATCTTAAG 60
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 155 ATGGTTGGAGGAAGTAGTGCACAGAAGCTAACTACAAATGATGCACTTGCATATCTTAAA 214
Query 61 GCTGTGAAGGATAAGTTTCAAGATAAACGTGATAAATACGATGAGTTTCTTGAGGTTATG 120
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 215 GCTGTCAAGGATAAATTTCAAGATAAACGTGACAAATACGATGAGTTTCTTGAGGTTATG 274
Query 121 AAAGATTTTAAAGCTCAGAGAGTTGATACTACTGGTGTTATCTTAAGGGTGAAAGAACTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 AAAGATTTTAAAGCTCAGAGAGTTGATACTACTGGTGTTATCTTAAGGGTGAAAGAACTT 334
Query 181 TTCAAGGGGAACAGGGAACTGATTTTGGGGTTCAATACTTTCTTGCCAAAGGGTTTCGAG 240
|| || |||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 335 TTTAAAGGGAACAGAGAATTGATTTTGGGGTTTAATACTTTCTTACCAAAGGGTTTCGAG 394
Query 241 ATAACTCTCCGACCCGAGGATGACCAACCTGCTGCGCCAAAGAAGCCTGTTGAGTTTGAG 300
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 395 ATAACTCTCCGACCCGAGGATGACCAACCCGCTGCACCAAAGAAGCCTGTTGAGTTTGAG 454
Query 301 GAAGCTATTAGTTTTGTCAACAAGATTAAGACAAGGTTTCAAGGCGATGATCGTGTATAC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GAAGCTATTAGTTTTGTTAACAAGATTAAGACAAGGTTTCAAGGCGATGATCGTGTATAC 514
Query 361 AAATCGTTTTTAGACATTTTAAACATGTATAGAAAGGAAAACAAGTCCATTACTGAGGTC 420
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 515 AAATCGTTTTTAGACATTTTGAACATGTATAGAAAGGAAAACAAGTCTATTACTGAGGTC 574
Query 421 TATCAAGAGGTGGCTATCCTTTTTCGGGACCATCACGATTTGCTTGTG-GAGTTCACTCA 479
|| || |||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 575 TACCATGAGGTGGCTATCCTTTTTCGGGACCATCACGATTTGCTTG-GAGAGTTCACTCA 633
Query 480 CTTTCTCCCTGATACTTCAGCAACTGCATCTACTAATGATTCTCTAAAAATGCCAGTACG 539
||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 634 CTTTCTCCCTGATACTTCAGCAACTGCATCTACTAATGATTCTGTAAAAGTTCCAGTACG 693
Query 540 TGATAGAGGCATTAAGTCTCTTCCCAACATGCGTCAAATAGATCTTGATAAGAAGGACCG 599
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 694 TGATAGAGGCATTAAGTCTCTTCCCACCATGCGTCAAATAGATCTTGATAAGAAGGACCG 753
Query 600 GATTATTACTTCGCTTCCTGACCGTGCCCTCAAAACCGAACATATGGACGTAGACCATGA 659
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 754 GATTATTACTTCGCATCCTAACCGTGCCCTCAAAACCGAAAATATGGACGTAGACCATGA 813
Query 660 GAGATCTTTGTTGAAAGATAGTAAAGAAGAAGTGAGACGCATTGACAAAAGGAATGATTA 719
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 814 GAGGTCTTTGTTGAAAGATAGTAAAGAAGAAGTGAGACGCATTGACAAAAAGAATGATTT 873
Query 720 CATGGATGACAGAGATAGGAAAGATTACCGAGGTCTTGAACATGATAGCCATAAAGAGCA 779
||||||||| ||||| |||||||||||| |||||||||| || |||||||||||||| ||
Sbjct 874 CATGGATGATAGAGACAGGAAAGATTACAGAGGTCTTGACCACGATAGCCATAAAGAACA 933
Query 780 TTTCTTCAACAACAAAAAGAAATTGATTC-TAAAGGATGATGATTCTGCTGAAATGTCAA 838
||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 934 TTTCTTCAACAGCAAAAAGAAATTGATACGTAA-GGATGATGATTCTGCTGAAATGTCAG 992
Query 839 ATCAAGCTAGGGAAGGAGACAAGTTTTCTGGAGCCATTCCCAGTTCATCTACTTATGATG 898
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 993 ATCAAGCCAGGGAAGGAGACAAGTTTTCTGGAGCCATTCCGAGTTCATCTACTTATGATG 1052
Query 899 AAAAAGGTGCTACTCTTTATGTGATGACAGGTCATAGCCAAGAACTTGCTTTTGTTGATA 958
|||||||| | | | | | | || || || ||||||||||||||||
Sbjct 1053 AAAAAGGT-C-A-T----A-G------C----CA-AG--AA---CTTGCTTTTGTTGATA 1088
Query 959 GAGTGAAGGCAAAGCTTGATACCGCGGAAAACCAGGAGTTCTTACGATGTCTTAATCTCT 1018
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1089 GAGTGAAGGCAAAGCTTGATACCGCGGATAACCAAGAGTTCTTACGATGTCTTAATCTCT 1148
Query 1019 ATTCAAAGGAGATAATCAGCCAGCCAGAATTGCAATCTTTGGTGAGCGATTTAATTGGAG 1078
|||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct 1149 ATTCAAAGGAGATAATCAGCCAACCAGAATTGCAGTCTTTGGTGAGTGATTTAATTGGTG 1208
Query 1079 TATATCCAGACCTTATGGACGCCTTCAGAGtttttttGGCTCAGTGTGACAAGAATGATG 1138
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1209 TATATCCAGACCTTATGGACGCCTTCAAAGTCTTTTTGGCTCAGTGTGACAAGAATGATG 1268
Query 1139 GATTACTCTCTGGTATCGTGTCTAAGA 1165
|||||||||||||||||||||||||||
Sbjct 1269 GATTACTCTCTGGTATCGTGTCTAAGA 1295
> AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:8563558-8570505
REVERSE LENGTH=4441
Length=4441
Score = 1035 bits (560), Expect = 0.0
Identities = 901/1062 (85%), Gaps = 37/1062 (3%)
Strand=Plus/Plus
Query 1226 GTGAAGGCAAATGTCCTCAACCTACTAAGTCACAGGACAAAGATACAGACCGA-GAACGT 1284
|||||||||||| ||||||| | | ||||| |||||| |||| ||||| | |||| |
Sbjct 1266 GTGAAGGCAAATATCCTCAA-C--C---GTCACTGGACAATGATAGAGACC-AGGAACAT 1318
Query 1285 GAA-A-AGATTGAAAGG-TATAGAGAAAGAGACCGCGAGAAGGAGAGGCTTGAAAAGGCG 1341
|| | ||| ||| || | |||||| ||||| | || ||||| ||||||||||| ||
Sbjct 1319 -AAGAGAGA-TGACGGGCT-TAGAGATAGAGATCATGAAAAGGAAAGGCTTGAAAAAGCA 1375
Query 1342 GCAGCGAGTCAGAAATGGGCTAAA-CCTATCAGTGAGCTAGATCTCTCGAACTGTGAACA 1400
|| || | || ||||||||| ||| || |||||||| |||||||||||||||||||||||
Sbjct 1376 GCTGCAAATCTGAAATGGGC-AAAGCCAATCAGTGAACTAGATCTCTCGAACTGTGAACA 1434
Query 1401 GTGTACACCTAGTTATCGGCGACTTCCAAAGAATTATCCAATTCCTATAGCAAGCCAAAA 1460
|| || |||||||||||| ||||||||||||||| |||||| |||| |||||||| ||
Sbjct 1435 ATGCACTCCTAGTTATCGGTTACTTCCAAAGAATTACCCAATTTCTATTGCAAGCCAGAA 1494
Query 1461 AATGGAGATTGGTAGCCAAGTGCTTAATGATCATTGGGTCTCCGTCACTTCAGGAAGCGA 1520
| ||||| |||| | || ||||||||||| |||||||||||||| |||||||| ||
Sbjct 1495 GACAGAGATCGGTAAACTGGTTCTTAATGATCACTGGGTCTCCGTCACATCAGGAAGTGA 1554
Query 1521 AGATTATTCATTTAAACACATGCGTAAGAACCAGTATGAAGAGAGCCTATTCAAATGTGA 1580
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1555 AGATTATTCATTTAGCCACATGCGTAAGAACCAGTATGAAGAGAGCCTCTTCAAATGTGA 1614
Query 1581 AGATGACAGGTTTGAGCTAGACATGTTATTAGAGTCTGTGA-TCTCTGCTACGAATAG-A 1638
||||||||||||||||| |||||| ||||||||||||| | | || | || || || |
Sbjct 1615 GGATGACAGGTTTGAGCTGGACATGCTATTAGAGTCTGTAAAT-TCAACGAC-AA-AGCA 1671
Query 1639 -GTGGAAGAGTTATTGTCTAAGATTAACAGTAATGAATTGAAAACCGACACTCCCATCTG 1697
|||||||| |||||| | || ||||||||||||||| |||||||| ||| ||||||| |
Sbjct 1672 TGTGGAAGAATTATTGACAAAAATTAACAGTAATGAACTGAAAACCAACAGTCCCATCCG 1731
Query 1698 CATCGAGGATCACCTCACAGCTCTAAACCTAAGATGCATAGAACGGTTATATGGTGACCA 1757
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 1732 TGTCGAGGATCACCTCACAGCTCTAAACTTAAGATGCATAGAACGGTTGTATGGTGATCA 1791
Query 1758 CGGGCTCGATGTGTTGGATTTGTTAAAGAAGAATGCATATCTTGCTTTACCGGTAATACT 1817
||||||||||||| ||||| || | |||||||| | | |||||||||||| || || ||
Sbjct 1792 CGGGCTCGATGTGATGGATGTGCTGAAGAAGAACGTGTCTCTTGCTTTACCTGTTATCCT 1851
Query 1818 AACCCGTTTGAAACAAAAGCAAGAAGAGTGGGCAAGGTGTCGTACTGAGTTTAACAAAGT 1877
||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 1852 AACACGTTTGAAACAGAAGCAAGAAGAGTGGGCAAGGTGTCGTTCTGATTTTGACAAAGT 1911
Query 1878 CTGGGCTGACATATATACAAAGAACTACCACAGGTCGCTTGATCATCGCAGTTTTTATTT 1937
||||||||| |||||| | ||||| ||| ||| ||||||||||||||| ||||| || ||
Sbjct 1912 CTGGGCTGAGATATATGCTAAGAATTACTACAAGTCGCTTGATCATCGAAGTTTCTACTT 1971
Query 1938 CAAACAGCAGGATTCAAAGAATCTGAGTACAAAAGCATTGCTGGCAGAGATAAAAGAGAT 1997
||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||
Sbjct 1972 CAAACAGCAGGATTCAAAGAAGCTGAGCATGAAAGCATTGTTGGCAGAGATAAAAGAGAT 2031
Query 1998 CT-CTGAAAAGAAGCGAGGCGAAGATGATGCACTTCTTGC-TCTTGCGGCTGGAAATAGA 2055
| ||||||||||||||| | |||||| |||||||||| | |||| || |||||||||
Sbjct 2032 -TACTGAAAAGAAGCGAGA-G--GATGATTCACTTCTTGCAT-TTGCAGCCGGAAATAGA 2086
Query 2056 CGAACCATTTCTTCCA-ATATG-AGTTTTGATTATCCGGATCCTGATCTTCACGAAGAT- 2112
| | ||||||| ||| || || ||||| ||||||||||||| ||| ||||| ||||||
Sbjct 2087 CTATCCATTTCC-CCAGATTTGGAGTTT-GATTATCCGGATCATGACCTTCATGAAGATC 2144
Query 2113 TTGTATCAGCTGATCAAGTATTCATGTGGAGAAATGTGTTCAACAGAACAGTTAGATAAG 2172
|| || ||||||||||| ||||| |||| ||||||||| || || |||||||||||||||
Sbjct 2145 TT-TACCAGCTGATCAAATATTCGTGTGCAGAAATGTGCTCTACCGAACAGTTAGATAAG 2203
Query 2173 GTAATGAAGGTATGGACAGAATTTT-TGGAACCAATATTTGGTGTTCCTTCTCGCCCTCA 2231
||||||||| | |||||| | ||| |||||| |||||||||||||||||||||||||||
Sbjct 2204 GTAATGAAGATTTGGACA-ACTTTCGTGGAACAAATATTTGGTGTTCCTTCTCGCCCTCA 2262
Query 2232 AGGTGCCGAAGACCGAGAAGATGCTGTCAAGTCTACGAACCA 2273
|||||| ||||||| |||||| | ||||||||| | ||||||
Sbjct 2263 AGGTGCTGAAGACCAAGAAGACGTTGTCAAGTCCATGAACCA 2304
Score = 230 bits (124), Expect = 1e-58
Identities = 264/328 (80%), Gaps = 23/328 (7%)
Strand=Plus/Plus
Query 863 TTTCTGGAGCCATTCCCAGTTCATCTACTTATGATGAAAAAGGTGCTACTCTTTATGTGA 922
|||||||||| |||| ||||||||||||||||||||||||||||| | ||| |
Sbjct 951 TTTCTGGAGCGGTTCCTAGTTCATCTACTTATGATGAAAAAGGTGC--C-----ATGA-A 1002
Query 923 TGACAGGTCATAGCCAAGAACTTGCTTTTGTTGATAGAGTGAAGGCAAAGCTTGATACCG 982
| || | | || ||||| || ||| |||| |||||||| |||| ||||||| | ||
Sbjct 1003 --A-AGTT-ACAGTCAAGATCTAGCTATTGTCGATAGAGTAAAGGAAAAGCTTAACGCCT 1058
Query 983 CGGAAAACCAGGAGTTCTTACGATGTCTTAATCTCTATTCAAAGGAGATAATCAGCC-AG 1041
| || |||||||||| ||||| ||||||||||||| |||||| ||||||||||||| |
Sbjct 1059 CAGAGTACCAGGAGTTTTTACGTTGTCTTAATCTCTTTTCAAAAGAGATAATCAGCCGA- 1117
Query 1042 CCAGAATTGCAATCTTTGGTGAGCGA-TTTAATTGGAGTATATCCAGACCTTATGGACGC 1100
|||||| ||||||||||||| || || |||||| ||||||||||| ||||| ||||| |
Sbjct 1118 CCAGAACTGCAATCTTTGGT-AGGGAATTTAATCGGAGTATATCCTGACCTCATGGATTC 1176
Query 1101 CTTCAGAGtttttttGGCT-CAGTGTGACAAGAATGATGGATTACTCTCTGGTAT-CGTG 1158
||| | || ||||||| | || ||||| |||||||| ||| | ||||||||||| | ||
Sbjct 1177 CTTTATAGAGTTTTTGG-TGCAATGTGAAAAGAATGAAGGACTGCTCTCTGGTATTC-TG 1234
Query 1159 TCTAAGAGTAAGTCTAGCT-AT-TTTTG 1184
||||||||||||||| || || |||||
Sbjct 1235 ACTAAGAGTAAGTCTA-CTTATCTTTTG 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 221587387231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5