BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476142
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70180.2 | Symbols: | Sterile alpha motif (SAM) domain-cont... 1487 0.0
> AT1G70180.2 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr1:26426341-26429361 FORWARD LENGTH=1970
Length=1970
Score = 1487 bits (805), Expect = 0.0
Identities = 1012/1108 (91%), Gaps = 30/1108 (3%)
Strand=Plus/Plus
Query 3 AAATCCAAACCTATCTCGTAAAATTTTCGTTCCGATTGATGAGAGCATGT---GAAGCCA 59
|||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 6 AAATCCAAACCTATCTCGTAAAATTTGCGTAGCGATTGATGAGAGCATGTGAAGAAGCCA 65
Query 60 CTAGATGAGTCAGGTCTCTTTGGTTTCGCACTGCGCAGCACTTTCAAAG--C---CAAGA 114
|||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 66 CTAGATGAGTCAGGTCTCTTTGGTTTGGCACTGCGCAGCACTTTCAAAGCCCAAGCAAGA 125
Query 115 GT-C--CGTCACGAACGTCGTCTTCGTCTCCACCGATTCTTCACGTACCTTTTTA--CTC 169
|| | ||||||||||||| ||||||||||||||||||||||||| |||| |||| |||
Sbjct 126 GTCCGTCGTCACGAACGTCTTCTTCGTCTCCACCGATTCTTCACGAACCTGTTTACTCTC 185
Query 170 --TCTGTGA-TTTTGAGTAGATTCGGCTTCGTATGATTAGGGTTTGAAGGAGGTGATTGT 226
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 186 TTTCTGTGATTTTTGAGTAGATTCGGCTTCGTACGATTAGGGTTTGAAGGAGGTGATTGT 245
Query 227 GGTGTCTTTCGTTCTTCGTGGTTTTGTTTCACTGTAAGTTAGAGAATTGGCTCCAGTTGA 286
||||||||||||| || |||||||| | |||||||||||| ||||||||||||||||||
Sbjct 246 GGTGTCTTTCGTTGTTTGTGGTTTTATATCACTGTAAGTT--AGAATTGGCTCCAGTTGA 303
Query 287 TTTTCCTAGGGTTTTCACAAATGTCGGAAGCTTCGAGACGGAGTAGGGTTACTATAACTC 346
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 304 TTTTCCTAGGGTTTTCACAAATGTCGGAAGGTTCGAGACGGAGTAGGGTTACTATAACTC 363
Query 347 TAGGGCGTAGCGGTCAGGTGGTGAATCGAGCTGCAAGTGATTTAGATGATGGTTATGAGT 406
|||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 364 TAGGTCGTAGCGGTCAGGTGGTGAATCGAGCTGCAAGTGATATAGATGATGGGTATGAGT 423
Query 407 TGCCTAGAGTTGGGACTAAGCGGTCTGTCAAAGAAAGATTAGGGAATCAGTTAGATAGTT 466
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 424 TACCTAGAGTTGGGACTAAGCGGTCTGTCAAAGAGAGATTAGGGAATCCGTTAGATAGTT 483
Query 467 CTGTTTATGGTGGAGAAGAGGTGGTCAGTAAAAGGCAGAGAGGGGAAGCAAGTTTGAGTG 526
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 484 CTGTTTATGGTGGAGAAGAGGTGGTCAGTAAAAGGCAAAGAGGGGAAGCAAGTTTCAGTG 543
Query 527 GAAATGATTTGCAGATCAGTCAAAATGATCTCCGATTCAAACTGATGCAAAAGAATGCCC 586
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 544 GAAATGATTTGCAGATCAGTCGAAATGATCTCCGATTCAAACTGATGCAAAAGAATGCCC 603
Query 587 AGAGGCGAGCTCAGAGCGATGAAGGCAGCACTATGGATCTTCGTGAAAAGCTCTCAAGGA 646
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 AGAGACGAGCTCAGAGCGATGAAGGCTGCACTATGGATCTTCGTGAAAAGCTCTCAAGGA 663
Query 647 GTGAGCAGCCTCCTCGTAGCCTTGATATTAGACCTCGTATGGCTGAGCCGAGGGATCTTC 706
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 664 GTGAGCAGCCTCCTCGTAGCCTTGATACAAGACCTCGTATGGCTGAGCCGAGGGATCGTC 723
Query 707 CTTTACCTTCATCAAGAACTGCTCGTGGTTCCTCTCAGATGATTTCATCACGTAGTTCGC 766
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 724 CTTTATCTTCATCAAGAACTGCTCGTGGTTCCTCTCAGATGATTTCATCAAGTAGTTCGC 783
Query 767 ATCCTGCATGGGCTCTGGAAGATTTAAGACGAAGGTCTCCAGAGAGATTTATGGATACTT 826
| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 784 ACCCTGCATGGGCTCTGGAAGATTTACGACGAAGGTCTCCAGAGAGATTTGTGGATACTT 843
Query 827 CCAGGGGTCTATCGCCGCCAAGAAATACTGGACGTGTCATTGGCATTCCAAGGGCTCCAT 886
||||||||| |||||||||||||||| ||||| || |||||||||||||||||| || |
Sbjct 844 CCAGGGGTCGATCGCCGCCAAGAAATGCTGGAAGTTTCATTGGCATTCCAAGGGAACCTT 903
Query 887 cccccccAAGAAATGCTGGAAGGGTAATTGGCACT-CGAAGGGATCTATCACCGCCAAGA 945
|||| |||||||||| | ||||| | ||||||| | | ||||||| |||||| ||||||
Sbjct 904 CCCCTCCAAGAAATGGTAGAAGGATGATTGGCAGTGC-AAGGGATAGATCACCTCCAAGA 962
Query 946 AAT-AGTAGAAGGATCATCGCCAGTCCAAGGAATTTATCACCACCAAGAAACGCTGGAAG 1004
| | | | ||||||| || | |||||||||| || ||||||| |||||| | ||||||||
Sbjct 963 AGTGA-TGGAAGGATAATTGGCAGTCCAAGGGATATATCACCTCCAAGAGATGCTGGAAG 1021
Query 1005 GATAATTGGCTCTCCAAGAGAT-AGATCACCTCCAAGAAATGCTGGAAGGAG-ATTTGGC 1062
|| | ||||| ||||||| ||| || ||||| |||||||||||||||||| | | ||||
Sbjct 1022 GAGATTTGGCCCTCCAAGGGATCAG-TCACCGCCAAGAAATGCTGGAAGG-GTAACTGGC 1079
Query 1063 -GCTCCAAGGGATCA-ATCACCGCCAAG 1088
| |||||||||| | |||||| |||||
Sbjct 1080 AG-TCCAAGGGAT-AGATCACCTCCAAG 1105
Score = 1452 bits (786), Expect = 0.0
Identities = 960/1041 (92%), Gaps = 24/1041 (2%)
Strand=Plus/Plus
Query 865 ATTGGCATTCCAAGGGCTCCATcccccccAAGAAATGCTGGAAGGGTAATTGGCACTCGA 924
||||||| | |||||| | ||| || ||||||| || ||||||| ||||||||| || |
Sbjct 930 ATTGGCAGTGCAAGGGATAGATCACCTCCAAGAAGTGATGGAAGGATAATTGGCAGTCCA 989
Query 925 AGGGATCTATCACCGCCAAGAAATAG-TAGAA-G-GATCATCGCCAGTCCAAGGAATTTA 981
|||||| ||||||| |||||| || | | ||| | ||| | ||| ||||||| | | |
Sbjct 990 AGGGATATATCACCTCCAAGAGAT-GCTGGAAGGAGAT-TTGGCC-CTCCAAGGGA-TCA 1045
Query 982 -TCACCACCAAGAAACGCTGGAAGGATAATTGGCTCTCCAAGAGATAGATCACCTCCAAG 1040
||||| |||||||| ||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct 1046 GTCACCGCCAAGAAATGCTGGAAGGGTAACTGGCAGTCCAAGGGATAGATCACCTCCAAG 1105
Query 1041 AAATGCTGGAAGGAGATTTGGCGCTCCAAGGGATCAATCACCGCCAAGGAGCACCAGAAG 1100
|||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1106 AAATGCTGGAAGGAGAATGGGCCCTCCAAGGGATCAGTCACCGCCAAGGAGCACCAGAAG 1165
Query 1101 CTTCAGTAGTAATTCTAGGGCTCTGTCCCCAGCTAGAAATATTGGAAGCTACATGAGTTC 1160
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1166 CTTCAGTAGTAATTCTAGGGCTCTGTCCCCAGCTAGAAATATGGGAAGCTACATGAGTTC 1225
Query 1161 TTCTCGGGGGTTTTCCCCTCCTAGGAATCCTGGAAGCTACATGGGTTCTTCCAGGGGTTC 1220
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1226 TTCTCAGGGTTTTTCCCCTCCTAGGAATCCTAGAAGCTACATGGGTTCTTCCAGGGGTTC 1285
Query 1221 TCCTCCACGTAGTAACATTGAAGATTTTCATGGACGAAGCAGGATGCTTGATGATAGGAG 1280
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1286 TCCCCCACGTAGTAACATTGAAGATTTTCATGGACGAAGCAGGATGCTTGATAATATGAG 1345
Query 1281 AGCATCCCCGTATCCTGTTAGAGGTTTACTAAATGGTCAAGCGCCAGCAAGTGGTGCTCC 1340
|||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1346 AGCATCGCCATATCCTGTTAGAGGTGTACTAAATGGTCAAGCGCCATCAAGTGGTGCTCC 1405
Query 1341 TTTCGCCAGGCCAATGTTACCTCCTCCAGTCCCAAACCCACATCCATTGCCTCCATTGAG 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TTTCGCCAGGCCAATGTTACCTCCTCCAGTCCCAAACCCACATCCATTGCCTCCATTGAG 1465
Query 1401 CCAGCTTCCTCCACTTGGAAGTATGATGCAGACCAGTCCCTTCTCTGTGGAAGAGCCTCT 1460
|||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 1466 CCAGCTTCCTCCACTTGGAAGTATTATGCAGAACAGTCCCTTCTCTGTGGACGAGCCTCT 1525
Query 1461 ATCAGTTGATGGCTTTCTAAATTCAATTGGACTTGGAAAATACTCCCTTGCCTTTAAGAG 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 ATCAGTTGATGGCTTTCTAAATTCAATTGGACTTGGAAAATACTCCCTTGCCTTTAAGAG 1585
Query 1521 AGAGGAAGTGGATATGACCACAATAAAGCAGATGAAAGAAAGTGATCTAAAAGATCTCAT 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 AGAGGAAGTGGATATGACCACAATAAAGCAGATGAAAGAAAGTGATCTAAAAGATCTCAT 1645
Query 1581 CATACCAATGGGTCCAAGGAAGAAGATTCTTCAGGCTATAGCGTCTCTTCCAACAAGGTA 1640
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1646 CATACCAATGGGTCCAAGGAAGAAGATTCTTCAGGCTATAGCGTCCCTTCCAACAAGGTA 1705
Query 1641 GCGATGACAAGACGGGTTTGGCCTCTCGCTGCTTCTCACTCTTTTTTGGTCTTGTTAGCG 1700
|| |||| | ||| | | |||||| ||||||||||||||||||| ||||||||||||
Sbjct 1706 GCAATGA-A---CGGATCTCGCCTCTAGCTGCTTCTCACTCTTTTT-GGTCTTGTTAGCC 1760
Query 1701 TCTATGCGGATCGAAACTATGATAA-TTTTTTGAGATCCAACCCGAATCTTTTCTCTCCG 1759
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1761 TCTATGCGGGTCGAAACTATGATAACTTTTTTGAGATCCAACCCGAAACTTTTCTCTCCG 1820
Query 1760 GATAATTGTAGGCAGCAGAACTTTCTTTTGTAATTCTTCTCTGTTATGGAtttttgtttt 1819
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1821 GATGATTGTAGGCAGCAGAACTTTCTTTTGTAATTCT-CTCTGTTATGGATTTTT-T--- 1875
Query 1820 cttttttCTGGTATACAATTTGTTAAAC-AAGCA--GCCTAATTGTGAAATG-CGACGGT 1875
|||||| ||||||||||||||||||| | ||||| |||||||||||||||| |||||||
Sbjct 1876 CTTTTT-CTGGTATACAATTTGTTAACCCAAGCACAGCCTAATTGTGAAATGTCGACGGT 1934
Query 1876 GTTTTGGTGTAATCCAAACAC 1896
|||||||||||||||||||||
Sbjct 1935 GTTTTGGTGTAATCCAAACAC 1955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5