BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476236 Length=1968 Score E Sequences producing significant alignments: (Bits) Value AT1G71040.1 | Symbols: LPR2 | Cupredoxin superfamily protein | ... 2680 0.0 AT1G23010.1 | Symbols: LPR1 | Cupredoxin superfamily protein | ... 1085 0.0 > AT1G71040.1 | Symbols: LPR2 | Cupredoxin superfamily protein | chr1:26796966-26800322 REVERSE LENGTH=2079 Length=2079 Score = 2680 bits (1451), Expect = 0.0 Identities = 1755/1897 (93%), Gaps = 40/1897 (2%) Strand=Plus/Plus Query 1 AACTTCTCTCCTCAACTTTTAAGTATTCcacacatacaaacacaca-a-acac---a--- 52 |||||||||||||||||||||||||||||||||||||||||||||| | |||| | Sbjct 1 AACTTCTCTCCTCAACTTTTAAGTATTCCACACATACAAACACACACACACACTTGACTT 60 Query 53 ----c-----aTTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCTAAGCCTGCTCGGA 103 | ||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 61 TTCTCATATAATTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCT-----T-CTCGGA 114 Query 104 GGATAATGACCAGAGACATGTTCCTCCTAATCGTAGCGATGACATGGCTCGTAACCGGAG 163 ||| |||||||||||||||||| || ||||||||| ||||| |||||||||||||||||| Sbjct 115 GGAGAATGACCAGAGACATGTTGCTTCTAATCGTAACGATGGCATGGCTCGTAACCGGAG 174 Query 164 ACGCAGGAGGCATAAAGGC-AGAGGAGCGACTGTTCAATCTTGAGAAGCTAGAGATGTTC 222 ||| |||||||||||| || ||||||||||||||| ||||||| |||||| ||||||||| Sbjct 175 ACGAAGGAGGCATAAA-GCAAGAGGAGCGACTGTTTAATCTTGGGAAGCTTGAGATGTTC 233 Query 223 GTTGACAAGCTTCCTCATATACCTACTCTTCATGGCTACCACTTCGTCAATGGCTTCCTT 282 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 234 GTTGACAAGCTTCCTCATATACCAACACTTCATGGCTACCACTTCGTCAATGGCTTCCTC 293 Query 283 AAACCCAAATCTCTTAACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 342 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 AAACCCAAATCTCTTCACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 353 Query 343 CCTGCCACGCCAGTGTTCGCGTATGGTACATCGAGA-CGTGT-AGCCACAGTTCCTGGAC 400 |||||||||||||||||||| ||||||||||| | | ||| | ||| ||||||||||||| Sbjct 354 CCTGCCACGCCAGTGTTCGCATATGGTACATC-AAAGCGT-TCAGCAACAGTTCCTGGAC 411 Query 401 CGACAATAGAAGCTGTTTATGGAGTCGACACATACGTGACGTGGCGAAATCACCTTCCTT 460 | |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| Sbjct 412 CAACAATAGAAGCTGTTTATGGCGTCGACACCTACGTGACGTGGCGAAATCACCTCCCTT 471 Query 461 TACATCATATCCTCCCTTGGGACCCAACAATCTCCCCTGCAATCCCTAAACACGGCGGCA 520 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 472 TACATCATATCCTCCCTTGGGACCCAACAATCTCTCCGGCAATCCCTAAACACGGCGGCA 531 Query 521 TTCCCACCGTGGTTCACTTGCACGGCGGCATCCACGAACCAACTAGCGATGGAAATGCAG 580 ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 532 TTCCCACGGTGGTTCACTTGCACGGAGGTATCCACGAACCAACTAGCGATGGAAATGCAG 591 Query 581 ATTCATGGTTCACCGCTGGTTTCAAAGAGACAGGTTCCAAATGGACCAAAAAGACTACGC 640 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 592 ATTCATGGTTCACCGCTGGTTTCAAAGAAACTGGTTCCAAATGGACCAAAAAGACTACAC 651 Query 641 ATTACGTTAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGC-GTTGGGTTTG 699 ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 652 ATTACGTCAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGCGGCAGGG-TTG 710 Query 700 ACCAGAGTCAACCTTCTCGCCGGTTTGTTAGG-TGCTTACATTCTCCGCCACAGCTCCGT 758 ||||||||||||||||| |||||||||||||| | ||||||||||||| || ||||| || Sbjct 711 ACCAGAGTCAACCTTCTTGCCGGTTTGTTAGGCT-CTTACATTCTCCGTCATAGCTCAGT 769 Query 759 CGAATCGCCTCTCCGACTACCTACCGGCCGTGAATTTGATCGTCCTTTGGTCATCTTTGA 818 |||||||||||| || |||||||||| || ||||| ||||||||||||||||||||||| Sbjct 770 CGAATCGCCTCTTCGGTTACCTACCGGACGCGAATTCGATCGTCCTTTGGTCATCTTTGA 829 Query 819 CCGAAGTTTTCGTAAAGATGGTTCCATTTACATGAACGCCACAGGGAACAACCCGTCGAT 878 |||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||| Sbjct 830 CCGATCTTTTCGTAAAGATGGTTCCATTTACATGAACGCTACAGGGAACAATCCAACGAT 889 Query 879 TCACCCGCAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCTTG 938 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 890 TCATCCACAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCATG 949 Query 939 GCCGCGACTAACCGTCCGTCGCCGGAAATATAGATTTCGGATCACAAACGCTAGTAACGC 998 |||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 950 GCCGAGATTAACCGTCCGCCGCCGGAAATATAGATTTCGAATCACAAACGCTAGTAACGC 1009 Query 999 AAGGTTTTTCCGGttttttttCTCCAACGGTCTCGAATTCATTGTCGTGGGTTCTGATTC 1058 |||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 1010 AAGGTTCTTCCGGTTCTTCTTCTCCAACGGTCTCGACTTCATTGTCGTTGGTTCCGATTC 1069 Query 1059 AGCTTACCTAGCGAAACCAGTATCGACCAAATCAGTTCTACTTGCTCCGTCGGAGATTAT 1118 ||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||| | Sbjct 1070 CGCTTATCTAGCGAAACCAGTATCGACCAAATCTGTTCTCCTAGCTCCGTCGGAGATTGT 1129 Query 1119 CGACGT-CGTCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1177 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 CGACGTAC-TCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1188 Query 1178 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1189 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1248 Query 1238 TTAAAATCAAGAACAAATCAGAAGTTGACACGTCGACTATTCCGAAGAAGCTAATTGAAT 1297 ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1249 TTATAATCAACTACAAATCAGAAGTTGACACGTCGATTATTCCGAAGAAGCTAATTGAAT 1308 Query 1298 ACCCGCCTGCTAATGTATCAACCTCCTCACGTACACGTTACATTGCTATGTTCGAGTATG 1357 |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1309 ACCCTCCTGCTCATGTATCAACCTCCACACGTACACGTTACATTGCTATGTTCGAGTATG 1368 Query 1358 TGTCTAGCACTGACGAGCCAACACATCTATACATCAACGG-CTTGCCGTACAACGCTCCC 1416 |||| |||| |||||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 1369 TGTCAAGCATTGACGAGCCAACACATCTATACATCAACGGTCT-GCCTTACAACGCTCCC 1427 Query 1417 GTGACAGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATTAATTTGACGGAG 1476 || || ||||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 1428 GTAACCGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATAAACTTAACCGAG 1487 Query 1477 GATAACCATCCATTGCACATTCACTTGGGATTGTTCAAAGTATTGGAGCAAACGGCATTG 1536 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1488 GATAACCATCCGTTGCACATTCACTTGGGATTGTTTAAAGTATTGGAGCAAACGGCATTG 1547 Query 1537 GTGAATAGTGAGGAGTTCATAGACTGTATGACTAAA-GAAAACGATGCCGTCAAGTGTCA 1595 ||||| ||||||||||||||||| || ||||||||| |||| |||||||||||||||| | Sbjct 1548 GTGAAGAGTGAGGAGTTCATAGAGTGCATGACTAAAAGAAA-CGATGCCGTCAAGTGTGA 1606 Query 1596 GATTAGCAAATACGCACTAGGGAACAAGACCGCGGTGACGGTACACGAGCGGGGATGGAA 1655 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1607 GATTAGCAAATACGCACGAGGGAACAAGACCGCGGTTACGGTACACGAGCGGGGATGGAA 1666 Query 1656 AAACGTATTCAAGATGATGCCGGGGCATGTCACGAAGATCCTCGTCAGATTTTCTTACAT 1715 |||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| Sbjct 1667 AAACGTATTCAAGATGATGCCGGGACATGTAACGAAGATACTCGTTAGATTTTCTTACAT 1726 Query 1716 TCACTCGAACGAATCTTACTCCTTTGATGCAACTCAAGAGCCAGGCTATGTCTACCATTG 1775 |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 1727 TCACTCAAACGAATCTTACTCCTTTGACGCAACTCAAGAGCCAGGCTATGTTTACCACTG 1786 Query 1776 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATGATT 1835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1787 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATAATT 1846 Query 1836 CTAAAACTAAA-CAACTTATAATTACGAGTGCAGAAT 1871 ||||||| ||| ||| ||| ||||||||||||||||| Sbjct 1847 CTAAAACGAAAACAATTTACAATTACGAGTGCAGAAT 1883 > AT1G23010.1 | Symbols: LPR1 | Cupredoxin superfamily protein | chr1:8147264-8149813 FORWARD LENGTH=2068 Length=2068 Score = 1085 bits (587), Expect = 0.0 Identities = 1255/1569 (80%), Gaps = 79/1569 (5%) Strand=Plus/Plus Query 292 TCTCTT-AACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTGCCTGCCAC 350 |||||| || || |||||||||| || |||||||||||||||||||| |||||||| || Sbjct 288 TCTCTTCAA-ATCGGCATGTTCTCCACTAAATGGAAATTCCACAGAGATTTGCCTGCGAC 346 Query 351 GCCAGTGTTCGCGTATGGTACAT--C-GAGACGTGTAGCCACAGTTCCTGGACCGACAAT 407 ||||||||| || || ||||||| | ||| | | || ||||||||||| ||||| || Sbjct 347 GCCAGTGTTTGCATACGGTACATCACGGAG-CAAG--GCAACAGTTCCTGGTCCGACGAT 403 Query 408 AGAAGCTGTTTATGGAGTCGACACATACGTGACGTGGCGAAATCACCTTCCTTTA-CATC 466 ||| | || |||||||| ||||||||||| ||||||||||||||||||||| | | || Sbjct 404 TGAAACCGTATATGGAGTAGACACATACGTTACGTGGCGAAATCACCTTCCTAAATC-TC 462 Query 467 ATATCCTCCCTTGGGACCCAACAATCTCCCCTGCAATC-CCTAAACACGGCGGCATTCCC 525 | ||||| ||||||||||| ||||||||||| |||| | || |||||||| || ||||| Sbjct 463 ACATCCTTCCTTGGGACCCCACAATCTCCCCAGCAA-CTCCGAAACACGGTGGAATTCCT 521 Query 526 ACCGTGGTTCACTTGCACGGCGGCATCCACGAACCAACTAGCGATGGAAATGCAGATTCA 585 || || |||||||| || || || |||||||||||||| ||||| ||||| || || | Sbjct 522 ACGGTTGTTCACTTACATGGAGGAATCCACGAACCAACAAGCGACGGAAACGCCGACGCG 581 Query 586 TGGTTCACCGCTGGTTTCAAAGAGACAGGTTCC-AAATGGACCAAAAAGAC--TACGCAT 642 |||||||| || ||||||| ||| ||||| || ||||||||||||| ||| || ||| Sbjct 582 TGGTTCACTGCCGGTTTCAGAGAAACAGG-ACCAAAATGGACCAAAACGACGTTA--CAT 638 Query 643 TACGTTAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGCGTTGGGTTTGAC- 701 |||| ||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct 639 TACGAGAACAAGCAACAACCTGGTAACATGTGGTACCATGACCATGCCATGGGTTTGACT 698 Query 702 CAGAGTCAACCTTCTCGCCGGTTTGTTAGGTGCTTACATTCTCCGCCA-CAGCTCCGTCG 760 | |||||||||| || ||||||||| |||| || || ||||| ||||| || | |||| | Sbjct 699 C-GAGTCAACCTCCTTGCCGGTTTGGTAGGCGCCTATATTCTTCGCCACCA-CGCCGTTG 756 Query 761 AATC-GCCTCTCCGACTACCTACCGGCCG-TGAATTTGATCGTCCTTTGGTCATCTTTGA 818 |||| ||| || | |||||||| || || ||| || || || || ||| |||| ||||| Sbjct 757 AATCTCCCTTTCAG-CTACCTACTGG-CGATGAGTTCGACCGACCGTTGATCATTTTTGA 814 Query 819 CCGAAGTTTTCGTAAAGATGGTTCCATTTACATGAACGCCACAGGGAACAACCCGTCGAT 878 || || ||||||||||| || || ||||||||||||||||| ||||||||||| ||||| Sbjct 815 TCGTAGCTTTCGTAAAGACGGGTCAATTTACATGAACGCCACTGGGAACAACCCATCGAT 874 Query 879 TCACCCGCAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCTTG 938 ||||||||| ||||| || || ||||| ||||| | || || || || || ||||| || Sbjct 875 TCACCCGCAGTGGCAACCGGAATATTTTGGCGATGTGATAATCGTTAATGGAAAAGCATG 934 Query 939 GCCGCGACTAACCGTCCGTCGCCGGAAATATAGATTTCGGATCACAAACGCTAGTAACGC 998 ||| || ||| |||||| || ||||||| ||||| || |||| |||||| || ||||| Sbjct 935 GCCAAGATTAAACGTCCGACGTAGGAAATACAGATTCCGTATCATAAACGCAAGCAACGC 994 Query 999 AAGGTTTTTCCGGttttttttCTCCAACGGTCTCGAATTCATTGTCGTGGGTTCTGATTC 1058 ||||||||| |||||| |||||||||||||| || ||||| || ||||| |||||||| Sbjct 995 TAGGTTTTTCAAGTTTTTCTTCTCCAACGGTCTAGATTTCATCGTTGTGGGGTCTGATTC 1054 Query 1059 AGCTTACCTAG-CGAAA-CCAGT-ATCGACCAAATCAG-TTCTACTT-GCTCCGTCGGAG 1113 ||| || | | | ||| || || || ||||||||| | |||| ||| |||| || || Sbjct 1055 AGCGTA-TTTGTC-AAAGCCGGTGAT-GACCAAATC-GATTCT-CTTATCTCCATCAGAA 1109 Query 1114 ATTATCGACGTCGTCGTTGACTTT-T-CAAAGTCAACATCGAAAACGGCAATTCTTGCCA 1171 ||| | ||||| || ||||| ||| | |||| ||| | |||| ||||| | ||||| | Sbjct 1110 ATTGTAGACGTTGTTGTTGA-TTTCTACAAA-TCACCGTCGAGAACGGTGGTGCTTGCTA 1167 Query 1172 ACAATGCACCTTATCCTTACCCGTCG-GGAGATCCCGTC-ACGGAAGAGAACAGCAAAGT 1229 | | ||||| ||||||||||| | | || ||||| ||| || ||||| || |||| || Sbjct 1168 ATGACGCACCATATCCTTACCC-TAGTGGTGATCCTGTCAAC-GAAGAAAATGGCAAGGT 1225 Query 1230 CATGAAGTTTAAAATCAAGAACAAATCAGAAGTTGACACGTCG-ACTATTCCGAAGAAGC 1288 ||||| |||| ||||| || ||||||| | |||||| | | || ||||| ||||||| Sbjct 1226 AATGAAATTTATCATCAACAATGAATCAGAGGATGACACAT-GTACAATTCCCAAGAAGC 1284 Query 1289 TAATTGAA-TACCCGCCTGCTAATGTATCAACCTCC--TCACGTACACGTTACAT-TGCT 1344 | | | || || ||| |||| | || |||| | || || | || |||||||| | || Sbjct 1285 TCA-TCAATTATCCGAATGCTGACGTGTCAAACGCCGTTCTC--ACGCGTTACATCT-CT 1340 Query 1345 ATGTTCGAGTATGTGTCTAGCACTGACGAGCCAACACATCT-ATACATCAACGGCTTGCC 1403 |||| |||||||||| || | |||| |||||||| ||| | || |||| || ||||| Sbjct 1341 ATGTACGAGTATGTGAGTAACTCTGATGAGCCAACTCATTTGTTA-GTCAATGGTTTGCC 1399 Query 1404 GTA-CAACGCTCCCGTGACAGAAACTCCAAAAATC-GGCACAAGC-GAGGTGTGGGAAGT 1460 || || |||||||| ||||||||||| |||||| || || | | ||||| |||||||| Sbjct 1400 CTATGAA-GCTCCCGTTACAGAAACTCC-AAAATCAGGGACTA-CAGAGGTATGGGAAGT 1456 Query 1461 GATTAATTTGACGGAGGATAACCATCCATTGCACATTCACT-TGGGATTGTTCAAAGTAT 1519 ||| ||||||||||| ||||||||||| || |||||||| | | |||||||||||||| Sbjct 1457 GATAAATTTGACGGAAGATAACCATCCGTTACACATTCA-TCTAGGATTGTTCAAAGTGG 1515 Query 1520 TGGAGCAAACGGCA-T--TGG-TG-A--ATAGTGAGGAGTTCATA-GACTGTATGACTAA 1571 | |||||||||||| | ||| | | || | |||||||||| | || |||||||| || Sbjct 1516 TAGAGCAAACGGCATTACTGGCGGCAGGATTG-GAGGAGTTCA-AGGAGTGTATGACGAA 1573 Query 1572 AGAAAACGATGCCGTCAAGTGTCAGATTAGCAAATACGCAC-TAGGGAACAAGACCGCGG 1630 | ||||||| || ||||||||||| |||||||||||||| | | ||||| ||||| |||| Sbjct 1574 ACAAAACGACGCGGTCAAGTGTCAAATTAGCAAATACGCTCGT-GGGAAAAAGACAGCGG 1632 Query 1631 TGACGGTACACGAGCGGGGATGGAAAAACGTATTCAAGATGATGCCGGGGCATGTCACGA 1690 |||||| ||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||| Sbjct 1633 TGACGGCACACGAGAGGGGTTGGAAGAACGTATTCAAGATGATGCCGGGACATGTTACGA 1692 Query 1691 AGATCCTCGTCAGATTTTCTTACATTCACTCGAACGAATCTTACTCC-TTTGATGCAACT 1749 ||| || ||| | |||||||| || ||| | || | ||||||| || || ||| | ||| Sbjct 1693 GGATACTTGTCCGCTTTTCTTATATCCACACTAATGCATCTTAC-CCATTCGATCCGACT 1751 Query 1750 CAAGAGCCAGGCTATGTCTACCATTGTCACATATTGGACCATGAAGACAATATGATGATG 1809 || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1752 CAGGAACCGGGCTATGTCTACCATTGTCACATATTGGACCATGAGGACAATATGATGATG 1811 Query 1810 AGGCC-CTT 1817 ||||| ||| Sbjct 1812 AGGCCGCTT 1820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97489458390 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5