BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476240
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71080.1 | Symbols: | RNA polymerase II transcription elong... 1832 0.0
> AT1G71080.1 | Symbols: | RNA polymerase II transcription elongation
factor | chr1:26809841-26811842 REVERSE LENGTH=1324
Length=1324
Score = 1832 bits (992), Expect = 0.0
Identities = 1202/1298 (93%), Gaps = 36/1298 (3%)
Strand=Plus/Plus
Query 1 AAATTTCTGATCTCGGATTCGTCTTCTCTGCCCT-AAAGAAAAACCCTACGTGAGCTGCG 59
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 12 AAAATTCTGATCTCGGATTCGTCTTCTCTGCCCTAAAAGAAAAACCCTACGTGAGCTGCG 71
Query 60 TCAGTTCTGGGTCCTCCGCAATTTGAGAATCGGAGAGACCTCAAGTTTCGCGAAATCTCG 119
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||
Sbjct 72 TCAGTTCTGGGTCCTCCGCAATTTGAGAATCGGAGATATCTCAAGTTTCGC-AAA-GTC- 128
Query 120 TTGCGTCGATTTGATCTTCGTCTTCC-TGATCGATGGATTCACCTTGATCAATCGTTAAT 178
| ||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||
Sbjct 129 -T-CGTGGATTTGATCTTCGTC-TCCTTGATCGATGGATTCACCTTGAGCAATCGTTGAT 185
Query 179 CGAGCTTCGAAGATGTCGAATCACTCCATAGATGAACCCAGTACCGCCCCGAAGACAGAT 238
|||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct 186 CGAGCTTCGAAGATGTCGAATCACTCCAGAGATGAGCCTAGTACTGCCCCGAAGACAGAT 245
Query 239 CAATGGTATGATCTTGTCCTTGGTTCCTCTGCCAAAGATGATTCCTCCCATAAATTCTGC 298
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 246 CAATGGTATGATCTTGTCCTTGGTTCCTCTGCCAAAGATGACTCCTCCCATAAATTCTGC 305
Query 299 ACTTTGCGATATGAATTCAAGCCGGCTTCAATAGATAAGAACAGGTCAGGAACACTGCAC 358
||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||
Sbjct 306 ACTTTGCGATATGAATTTAAGCCGGCTTCAATCGATAAGAACAGGTCAGGATCAATGCAC 365
Query 359 AAGAAGAAGGATAACAGAGTTTCTGCTGAATTTCAGAATAACCAA-CATGGTAAACCCAA 417
||||||||||||||||||||||| | ||| ||||||||||||||| || |||||||||||
Sbjct 366 AAGAAGAAGGATAACAGAGTTTCAGTTGAGTTTCAGAATAACCAACCA-GGTAAACCCAA 424
Query 418 AGTGACATTTGAAGGTAGTAGCGAGGATTACAAAGAACA-CGATGCGGTGTTGTTTTTCG 476
|||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 425 GGTGACATTTGAAGGTAGTAGTGAGGATTACAAAGAA-AGCGATGCGGTGTTGTTTTTCG 483
Query 477 ATGGGGAGAAGTTTCGTTTGGAGAGGTTGCATCGAGCTGTGAAGCAGCTGCGACATCTTA 536
||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| |||
Sbjct 484 ATGGGGAGAAGTTTCGTTTAGAGAGGTTGCATCGGGCTGTTACGCAGCTGCGACATGTTA 543
Query 537 GGACACCAGGTGAATCTGCTGCGGCTTCTTCTCAGGCTGCGATGCCTGTGGAGCATAATC 596
||||||| |||||||||||||||| ||||||| ||||| |||||||||||| |||
Sbjct 544 GGACACCTGGTGAATCTGCTGCGG---CTTCTCAATCTGCGGTGCCTGTGGAGC---ATC 597
Query 597 GATTATCTCCTGTTGATCGTGCTGCTAAATCTCCACAAGTGAATAGAAGTTTGCTTCCAG 656
| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 598 GGTTATCTCCTGTTGGTCGTGCTGCTAAATCTCCACAAGTCAATAGAAGTTTGCTTCCTG 657
Query 657 ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAGCTGAACCTG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAGCTGAACCTG 717
Query 717 CCATCGCTGGAAACGTATCTGCTGCCTCACCAGTTGATGACAAGAACGATGATGGAGATG 776
||| | |||||||||| |||| |||||||||| || ||||||||||||||||||||||
Sbjct 718 CCAACACTGGAAACGTGCCTGCAACCTCACCAGTCGAGGACAAGAACGATGATGGAGATG 777
Query 777 AACATCACGAGATTGATCTGGTTGAAATATTTGGCTCATTTACACCAGAGAACGACAATG 836
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGCATCAAGAGATCGATCTGGTTGAAATATTTGGCTCATTTACACCAGAGAACGACAATG 837
Query 837 CAGAGAAAGAGAATGCTGACGGTGGAGAGTACGTCGAAAGCTTAAACAAACAGCTTAGCA 896
||||||||||||| ||||| |||||||| || || ||||||||||| |||||||||||||
Sbjct 838 CAGAGAAAGAGAACGCTGATGGTGGAGAATATGTAGAAAGCTTAAATAAACAGCTTAGCA 897
Query 897 TCACGGAAGAAGAGATTGCAGATGTAGATGACGATAGCGGTGGTGAAGGAGAAAAAGGTC 956
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 TGACGGAAGAAGAGATTGCAGATGTAGATGACGATAGCGGCGGTGAAGGAGAAAAAGGTC 957
Query 957 TAAATGCAGCAGAAGCACTTAGAGCACAAGTGAACGCAGAGGTGCAAAAGAGTCAAACCT 1016
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTAACGCAGCAGAAGCACTTAGAGCACAAGTGAACGCAGAGGTGCAAAAGAGTCAAACCT 1017
Query 1017 CAAGCTCAAGCAGTAGCAGTGGAAGCAGCAGCGGAAGTGACAGTGATGGTCGTAGCAAAA 1076
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 CAAGCTCAAGCAGTAGCAGTGGAAGTAGCAGCGGAAGTGACAGTGATGGTCGTAGCAAAA 1077
Query 1077 GCGTAAGCAGCGGAAGTGGCAGCGGCGGGCAAAGCAGCAGCGGAAGCAGTAGCCGTGGAA 1136
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1078 GCGTAAGCAGCGGAAGTGGCAGCGGCGGCCAAAGCAGTAGTGGAAGCAGTAGCCGTGGAA 1137
Query 1137 GTGGAGGAAGCGACGATGAAGATGAAGTCAACTCCGTATAACAAACCAGCTCC-AACAAC 1195
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1138 GTGGAGGAAGTGACGATGAAGATGAAGTCAACTCCGTATAACAA-CCAGCTCCCAACAAC 1196
Query 1196 TTTGTATCAAACAATATTTCCATATTTGAGACACTTGTGTCTGAATAATT---------- 1245
||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1197 TTTGT--CAAACAATATTTCCATATTTGAGACACTT-TGTCTGAATAATTTGGTTGAAGA 1253
Query 1246 --CCAAAAGGGTAAAAAATTTATGTTTTACTACGAAAG 1281
||||||||||||||| ||||||||||||||||||||
Sbjct 1254 ATCCAAAAGGGTAAAAA-TTTATGTTTTACTACGAAAG 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5