BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476280 Length=1208 Score E Sequences producing significant alignments: (Bits) Value AT1G71500.1 | Symbols: | Rieske (2Fe-2S) domain-containing pro... 1613 0.0 > AT1G71500.1 | Symbols: | Rieske (2Fe-2S) domain-containing protein | chr1:26935982-26937607 FORWARD LENGTH=1242 Length=1242 Score = 1613 bits (873), Expect = 0.0 Identities = 1121/1232 (91%), Gaps = 51/1232 (4%) Strand=Plus/Plus Query 1 GGCTACCATCGTTCTTCTTCTTTTTCGTTATCCACTTGTCTCTCTCCTTTGTGTGGTGAA 60 ||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||| || Sbjct 1 GGCTACCATTATTCTTCTTCTTCTTCGTTATCCAC-T-TCTCTCTCCTTTGTGTGGTCAA 58 Query 61 ATGCATTTCCCTCCATTCTCTTTCGCTCTCTCTCACACTCGTCCATGGCGACCACCGCAT 120 |||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||| Sbjct 59 ATGCATTTCCCTCCATTCTCTTACGCTTTCTCTCACTCTCGTCAATGGCGACCACCGCAT 118 Query 121 CTTCGTCTCTCCCTCGAAATTACTCCTTCACACCTCCTCGTCCTCCTCCATC-TTCAATC 179 |||| |||||||| || ||||||||||||||| |||| || ||| | |||| ||| ||| Sbjct 119 CTTCATCTCTCCCCCGTAATTACTCCTTCACAACTCCGCGACCT--T-CATCATTC-ATC 174 Query 180 CGCGGA---CC--T-G---GAACGCTGCCGCTTTATCTCCGCCGTAACCGACG-GTTAGC 229 || ||| || | | |||||||||| || ||||||||||||||||| || | |||| Sbjct 175 CGAGGACCGCCATTAGCTAGAACGCTGCCTCTCTATCTCCGCCGTAACCGTCGAG-TAGC 233 Query 230 TTTAACTTACCGATTGGACCAGAATTCGAAGCGGAGAAGTGGTGGTGGAAACGTAAGATG 289 | | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 234 TCTCACTTACCGATTGGACCAGAATTCGAAGCAGAGAA---GTGGTGGAAACGTAAGATG 290 Query 290 CGAGGCGACGGAGGTATCTTCTTCTTCGTCTGTATCCACACCTGGAAGGAATTGGGTGCC 349 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 291 CGAGGCGACGGAGGTATCTTCTTCTTCTTCTGTATCCACACCTGGAAGGAATTGGGTGCC 350 Query 350 GGTTGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTAATTCAAGACGATGA 409 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 351 GGTGGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTTATTCAAGACGATGA 410 Query 410 GACGATATTGTTGCTTTGGTATAAGAACGATGTGTTTGCTATTGAGAATCGTTCTCCTGC 469 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || || Sbjct 411 GACGATATTGTTGCTTTGGTATAAGAACGATGTTTTTGCAATTGAGAATCGTTCACCAGC 470 Query 470 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 530 Query 530 GTGCCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 589 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 GTGTCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 590 Query 590 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTGTACCCTGT 649 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 591 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTATACCCTGT 650 Query 650 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGTGGGAAAACAGAGGCAGC 709 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 651 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGCGGGAAAACAGAGGCAGC 710 Query 710 TGCTGAGATTGTGTTTAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 769 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TGCTGAGATCGTCTTCAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 770 Query 770 AGATGAGGTGAGAATGATTGTGGACGAGGGGTCTGAAGGATTTGGTTTCACGGTGAAGAA 829 ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 771 AGACGAGGTGAGAATGATTGTGGACGAGGGTTCTGAAGGATTTGGTTTCACGAAGAAGAA 830 Query 830 CGAAGTGATAAATGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTTGAGCT 889 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 831 CGAAGTGATAAACGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTCGAGCT 890 Query 890 ATTGACAGGTAAAGGTCTATTGAAGGGAACAGGATTCTTGGACTTCCTTTACTCTGCTTC 949 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 891 ATTGACAGGTAAAGGTCTATTGAAAGGAACAGGGTTCTTGGACTTCCTTTACTCTGCTTC 950 Query 950 AGATGCTTTCAAGTAGAGATAATATCATTGTTGGTCTGCTTTTGCTTGCCTCGTTTGTGC 1009 |||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||| Sbjct 951 AGATGCTTTCAAGTAGAGGTAATATCTTTGTTGGTCTGGTTTTGCTTGCCTCCTTTGTGC 1010 Query 1010 AGTTTGCCGAGAAACaaaaaaaaaTACTTCCGGAACTACTCACACCATGTCTTAGTATAT 1069 |||||||||||||||||||||||| | || | || | |||| |||||||| Sbjct 1011 AGTTTGCCGAGAAACAAAAAAAAA-A-------AA--A---AC-C-ATGTAATAGTATAT 1055 Query 1070 AGAGATGGCTTTGCTCTGTCTTTGTTTGTGTTTTACCCTCTTATACGAGATATTCTTTCT 1129 ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 1056 AGAGATGGCTTTGCTCTGTCTTTCTTTGTGTTT-ACCC-CTTATACGAGATATTCTTTCT 1113 Query 1130 TCTTCGTGAATTCAA-TT-TAA-----AACCTT-CT-A-TCTGTTTTGT-TT-GACATAC 1177 ||| | ||| ||||| || ||| || ||| | | | | |||||| || ||||||| Sbjct 1114 TCTCCTTGAGTTCAAATTATAATCTTCAAGCTTTCCCACTATCTTTTGTATTTGACATAC 1173 Query 1178 AACACTTCG-ATTTCATTGGATGAAACAAAAA 1208 ||||| || |||| ||||| ||||||||||| Sbjct 1174 AACACCTCATATTTGATTGGGTGAAACAAAAA 1205 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59337044190 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5