BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476302
Length=2392
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71810.1 | Symbols: | Protein kinase superfamily protein | ... 3631 0.0
> AT1G71810.1 | Symbols: | Protein kinase superfamily protein
| chr1:27002414-27008176 REVERSE LENGTH=2479
Length=2479
Score = 3631 bits (1966), Expect = 0.0
Identities = 2139/2223 (96%), Gaps = 10/2223 (0%)
Strand=Plus/Plus
Query 131 CTCTGCATGATATTGGAAGAGATGATTCTGCTTCCTTCTTCTATGCCAATCTTTTCTTTT 190
||||| | ||| ||| |||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 193 CTCTGTA-GATTTTGAAAGAGATGCTTCGGCTTCCTTCTTCTATGCCAATCGTTTCTTTT 251
Query 191 CCCGCCAATCCCAATCTGCTGATTAATCCACCACCGTCTTGGCCGTCGCGAAGAGGAACC 250
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 252 CCCGCCAATCCCAATCTGCTGATTAATCCACAACCATCTTGGCCGTCGCGAAGAGGAAAC 311
Query 251 TCCGCCGTTGTTGTCTCCGCTGCGTCTAGAGATGTAGATAGCTTCACGAGTAAATCCGGT 310
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 312 TCCGCCGTTGTTGTCTCCGCTGCGTCTAGAGATGTAGATAGTTTCACTAGTAAATCCGGT 371
Query 311 TATTTGTTCCGTCTCAGTGCCGATGAGGCTGATTCTTTGTCGGAGTACAATTTTCCCAGG 370
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TATTTGTTCAGTCTCAGTGCCGATGAGGCTGATTCTTTGTCGGAGTACAATTTTCCCAGG 431
Query 371 ATTGATGGGATGTATAAGAAGAAGCCTCTGATTCTGCTTCGTAGATTGGCTCAGATCGGA 430
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 432 ATTGATGGGATGTATAAGAAGAAACCTCTGATTCTGCTTCGTAGATTAGCTCAGATCGGA 491
Query 431 ACTACGTTTGGTTACTGGTTTGGGCTTCGCTTAGCCGATGAGGCTTTGGAACGGTCTGAG 490
||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 492 ACTACGTTTAGTTATTGGTTTGGGCTTCGCTTAGCTGATGAGGCTTTGGAACGCTCTGAT 551
Query 491 CAGATGTTCAAGGTACGAGCAGCTGAGCTTAGGAAATTGCTGGTGGAACTAGGTCCGGCG 550
|| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 552 CAAATGTTCAAGGTACGAGCAGCGGAGCTTAGGAAATTGCTTGTGGAGCTAGGTCCGGCG 611
Query 551 TACGTCAAAATCGCTCAAGCTGTTTCATCTCGTCCTGATTTGATACCTCCTATATACTTG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TACGTCAAAATCGCTCAAGCTGTTTCATCTCGTCCTGATTTGATACCTCCTATATACTTG 671
Query 611 GATGAACTCTCCTTGCTACAAGATCAAATAACTCCGTTTTCAAGCGAAGTTGCTTTCAAT 670
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 672 GATGAACTCTCCCTGCTACAAGATCAAATAACTCCGTTTTCAACCGAAGTTGCTTTCAAT 731
Query 671 ATGATAGAGGATGAACTTGGCCTTCCTATAGATGAGCTTTTCTCTGAGATTTCTCCTGAG 730
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 732 ATGATTGAGGATGAACTTGGTCTTCCTATAGATGAGCTTTTCTCTGAGATTTCTCCTGAG 791
Query 731 CCTGTTGCTGCAGCGTCCCTTGGACAGGTATATCAAGCTAGGCTCCGTAGAAGTGGAAAG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CCTGTTGCTGCAGCGTCCCTTGGACAGGTATATCAAGCTAGGCTCCGTAGAAGTGGAAAG 851
Query 791 GTTGTTGCTGTCAAAGTTCAGCGGCCTGGTGTACGAGCTGCTATTGCTTTGGACACATTA 850
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 852 GTTGTTGCTGTCAAAGTGCAGCGCCCTGGTGTACGAGCTGCAATTGCTTTGGACACATTA 911
Query 851 ATTCTGCGATATATAGCGGGTTTGATTAAAAAGGCTGGAAGATTCAACTCTGATCTCGAG 910
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 ATTCTTCGGTATATAGCGGGTTTGATTAAAAAGGCTGGAAGATTCAACTCTGATCTCGAG 971
Query 911 GCAGTTGTTGATGAATGGGCAACAAGTCTGTTTAAGGAGATGGATTACTTGAATGAAGCC 970
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GCAGTTGTTGATGAATGGGCAACAAGTCTGTTTAAGGAGATGGATTACTTGAATGAAGCT 1031
Query 971 CAAAATGGAATAAAATTTAGGAAGTTGTATGGTGGCATCAAAGATGTCTTGGTTCCAAAG 1030
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CAAAACGGAATAAAATTTAGGAAGTTGTATGGTGGCATCAAAGATGTCTTGGTTCCAAAG 1091
Query 1031 ATGTACACAGAGTACAGTACCAGCAAAGTTCTTGTAATGGAGTGGGTGGAGGGTCAGAAG 1090
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1092 ATGTACACAGAGTACAGTACCAGCAAAGTTCTTGTAATGGAATGGGTGGAGGGTCAGAAG 1151
Query 1091 CTTAATGAAGTTAATGACCTTTATTTAGTTGAGGTTGGCGTTTACTGTTCGTTTAATCAA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CTTAATGAAGTTAATGACCTTTATTTAGTTGAGGTTGGCGTTTACTGTTCGTTTAATCAA 1211
Query 1151 CTTCTGGAGTATGGATTTTACCATGCCGATCCCCACCCTGGGAATTTTCTTCGCACGTAT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CTTCTGGAGTATGGATTTTACCATGCCGATCCCCACCCTGGGAATTTTCTTCGCACGTAT 1271
Query 1211 GATGGGCAACTTGCATACTTAGATTTTGGTATGATGGGGGACTTTAGGCCAGAATTACGT 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GATGGGCAACTTGCATACTTAGATTTTGGTATGATGGGGGACTTTAGGCCAGAATTACGT 1331
Query 1271 GATGGATTCCTGGAAGCATGTCTTCATCTCGTAAATCGTGACTTCAAAGCGCTGGCTAAA 1330
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1332 GATGGATTCATGGAAGCATGTCTTCATCTTGTAAATCGTGACTTCAAAGCGCTGGCTAAA 1391
Query 1331 GACTTTGTAACTCTGGGGCTTCTTCCGCCAACAGCAGAAAAGAGCGCTGTGACAAAGGCT 1390
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1392 GACTTTGTAACTCTGGGGCTTCTTCCACCAACAGCAGAAAAGAGCGCTGTGACAAAGGCT 1451
Query 1391 TTAACCGATGTTTTTCAAGATGCAATTTCTAGAGGAGTTCGCAATATAAGCTTCGGTGAC 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TTAACCGATGTTTTTCAAGATGCAATTTCTAGAGGAGTTCGCAATATAAGCTTCGGTGAC 1511
Query 1451 CTGCTTGGCGACTTGGGAAAAACAATGTACCGATTCAAATTTAGAATACCACCCT-ATTT 1509
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 1512 CTGCTTGGCGACTTGGGAAAAACAATGTACCGATTCAAATTCAGAATACC-CCCTTATTT 1570
Query 1510 TTCTCTAGTTATCCGCAGCCTAGCTGTTTTGGAGGGCATTGCCATCGGTATAAGCCCAAA 1569
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1571 TTCTCTAGTTATCCGCAGTCTTGCTGTTTTGGAGGGCATTGCCATCGGTATAAGCCCAAA 1630
Query 1570 CTACAAGGTTTTAGGCAGTACATACCCTTGGATTGCTAGAAAGATTCTAACTGACAGCTC 1629
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1631 CTACAAGGTTCTAGGCAGTACATACCCTTGGATTGCTAGAAAGATTCTAACCGACAGCTC 1690
Query 1630 TCCACAGCTGAAAAGCTCTCTGCAAAATCTTTTATATGAGGAAGGTGTTTTCCGAATCGA 1689
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1691 TCCACAACTGAAAAGCTCTCTGCAAAATCTTTTATATGAGGAAGGTGTTTTCCGAATTGA 1750
Query 1690 CCGTCTTGAGTCTTTGCTTTCTGAGTCTCTTAGGACAGAGACGGCATTAATTCAAAAACC 1749
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 1751 CCGTCTTGAGTCTTTGCTTTCTGAGTCTCTTAGGACAGAGACAGCATTAGTTCAGAAACC 1810
Query 1750 ACTGGTGGGGACAGATTCTAATATTGCCATGAAGCAAATGCTAGCTTTTACTTTCACAGA 1809
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1811 AGTGGTGGGGACAGAATCTAATATTGCCATGAAGCAAATGCTTGCTTTTACTTTCACGGA 1870
Query 1810 ACAGGGTTCTTTTGTCAGAGAAATCCTTCTTCGTGAATTAGCTAAGGGTCTTGATGCATT 1869
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1871 ACAGGGTTCTTTTGTAAGAGAAATCCTTCTTCGAGAATTCGCTAAGGGTCTTGATGCATA 1930
Query 1870 TGGATTGGCAACTTTGGACTCTTTCACATTTTCTGGTTCAAGG-CCATCCACTTCCTTGA 1928
|||||||||||||||||||||||| ||||||||||||||| || ||||| | ||||||||
Sbjct 1931 TGGATTGGCAACTTTGGACTCTTTTACATTTTCTGGTTCA-GGACCATCGAGTTCCTTGA 1989
Query 1929 CAGAAGAAGACATGACAAACCTTAGAACTTTCTATCGCCTCATCTCATTGTTCTCAGGGA 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 CAGAAGAAGACATGACAAACCTTAGAACTTTCTATCGCCTCATCTCATTGTTCTCAGGGA 2049
Query 1989 TGCAAAAGGCTGAAAGCCAAGTAAAAGCGGTGAGTAAATATGGTGAGGCACTCACGCCTC 2048
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2050 TGCAAAAGGCTAAAAGCCAAGTAAAAGCGGTGAGTAAATATGGTGAGGCGCTCACGCCTC 2109
Query 2049 TAGACGAAGCATCACTGGTCATGTATCAGCTTCCATCAGCACAAGAGATGCTTCCGATTC 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 TAGACGAAGCATCACTGGTCATGTATCAGCTTCCATCAGCACAAGAGATGCTTCCGATTC 2169
Query 2109 TCTCCATCTTACCTGAGCTTCCACAGGAATCGCAACAGAGGTTGCTTCAGTTGCCAGGTG 2168
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2170 TCTCCATATTACCTGAGCTTCCACAGGAATCACAACAGAGGTTGCTTCAGTTGCCAGGTG 2229
Query 2169 ACTTGGTTGGAAGATTGGTGTCTCGGGCTTTTGCTAGAACCATTCGTAGGATGTTTCTTT 2228
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 2230 ACTTGGTTGGAAGATTGGTGACTCGGGCTTTTGCTAGAACCATTCGCAGGATTTTTCTTT 2289
Query 2229 GATGTCCGATTACaaaaaaaaaCACTTGCAGAGTTTAGACAAGACTCCTGCGATTTGAGT 2288
|||||||||||||||| |||||| ||||||| ||||||||||||| ||| |||||||||
Sbjct 2290 GATGTCCGATTACAAATAAAAAC--TTGCAGATTTTAGACAAGACTACTGTGATTTGAGT 2347
Query 2289 TTATTTATAATTTTTACAGAAAAGCTTAAAGAGAATCAGAGGAATGGATGTTTTGATCCG 2348
| |||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||
Sbjct 2348 T-ATTTATAATTTTTACATAAA--CTTGAAGAGAATCAGAGGAATGGCTGTTTTGATCCC 2404
Query 2349 ACA 2351
|||
Sbjct 2405 ACA 2407
Score = 187 bits (101), Expect = 4e-46
Identities = 131/145 (90%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 1 GGTGCCATTTGTGTGACACAGAAAATCCCAGCAAATGTCGAAGGGACGAGAGAAAGTATA 60
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1 GGTGCCATTTGTGTGACACAGAAAATCCCAGCAAATGTCG-AGAGA-GAGAGAAAGTATA 58
Query 61 AAGAATGTGACCAGCAAAAAAGAGATAAAACAGTAGAGAGTTTTCAT-ATTAGCCAtttt 119
|||||||||||| |||||||||||||||||||||||||| | || ||| |||||||
Sbjct 59 AAGAATGTGACCGGCAAAAAAGAGATAAAACAGTAGAGAACCAT-ATTATTTGCCATTTC 117
Query 120 tttGAAGAATCCTCTGCATGATATT 144
|| ||||||||| ||||||||||||
Sbjct 118 TTAGAAGAATCCACTGCATGATATT 142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118774489470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5