BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476340
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72100.1 | Symbols: | late embryogenesis abundant domain-co... 1247 0.0
> AT1G72100.1 | Symbols: | late embryogenesis abundant domain-containing
protein / LEA domain-containing protein | chr1:27127212-27128978
FORWARD LENGTH=1648
Length=1648
Score = 1247 bits (675), Expect = 0.0
Identities = 767/812 (94%), Gaps = 3/812 (0%)
Strand=Plus/Plus
Query 636 GCCCATGATGTGAAAGAGAGTGTAGCCCATAAAGCCCATGATGCTAAAGAGAGTGTAGCC 695
|||||||||| |||||||||||| || |||||||||||||||| ||||||||||| ||
Sbjct 672 GCCCATGATGCGAAAGAGAGTGTGGCTGATAAAGCCCATGATGCGAAAGAGAGTGTGGCT 731
Query 696 CATAAAGCCCATGATGCTAAAGAGAAGGTAAGAGAGAAAGCTCATGACGTCAAGGAGACG 755
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 732 CAGAAAGCCCATGATGCTAAAGAGAAGGTAAGAGAGAAAGCTCATGATGTGAAGGAGACG 791
Query 756 ATAGCCCAAAAAGCCCATGAATCGAAAGAGAGGGCAAAAGATAGAGTGAGGGAGAAGGCA 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GTAGCCCAAAAAGCCCATGAATCGAAAGAGAGGGCAAAAGATAGAGTGAGGGAGAAGGCA 851
Query 816 CAAGAATTGAAGGAAACGGCTGCTCATAAGTCTAAGAACGTGTGGGAGAGAGTTAAGAAT 875
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 852 CAAGAATTGAAGGAAACGGCTACTCATAAGTCTAAGAACGCGTGGGAGAGAGTTAAGAAT 911
Query 876 GCGACGCGTGAGTTTGGGTCAGCGACAGCAGCGACGTTGAGTCCGACTAAGGTAGCAAGC 935
| | |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 912 GGGGCGCGTGAGTTCGGGTCAGCCACAGCAGCGACGTTGAGTCCGACTAAGGTAGCGAGC 971
Query 936 ATGGTGGGGTTGACCGCGATTGCGGCTGCGTTTGGGACTTCCGTGTGGGTTACGTTTGTG 995
|| ||||||||||| | ||| ||||| || |||||||||||||||||||| |||||||||
Sbjct 972 ATTGTGGGGTTGACGGGGATAGCGGCAGCATTTGGGACTTCCGTGTGGGTGACGTTTGTG 1031
Query 996 TCAAGCTACGTTTTAGCCTCGGTGTTGGGGAGGCAACAGTTTGGGGTTGTGCAGAGTAAG 1055
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1032 TCAAGCTACGTTTTAGCCTCAGTGTTGGGGAGGCAACAGTTTGGTGTTGTGCAGAGTAAG 1091
Query 1056 CTGTATCCTGTTTACTTCAAGGCGACCTCTGTGGGAATCCTTGTGGGTTTGTTTGGTCAC 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 CTGTATCCTGTTTACTTCAAGGCGACCTCTGTGGGAATCCTTGTGGGTTTGTTTGGTCAC 1151
Query 1116 GTGCTTAGCCGGAGGAGGAAACTACTTACCGACGCGACGGAGATGTGGCAAGGGGTTAAC 1175
||||||||| || |||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1152 GTGCTTAGCAGGCGGAGGAAACTCCTTACCGATGCAACGGAGATGTGGCAAGGGGTTAAC 1211
Query 1176 CTCTTGTCCTCTTTCTTTATGATCGAGGCTAATAAGTCATTTGTCGAGCCACGTGCCACC 1235
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1212 CTCTTGTCCTCTTTCTTTATGATCGAGGCTAATAAGTCATTTGTTGAGCCACGTGCCACG 1271
Query 1236 AAGGCGATGTTTGAGCGAATGAAGGCAGAAAAAGAAGAAGGAAGAGGAG-AGAG-G-ACG 1292
||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| | |||
Sbjct 1272 AAGGCGATGTTTGAGAGAATGAAGGCCGAAAAGGAAGAAGGAAGAGGAGGAGAGAGGACG 1331
Query 1293 AGTGAGCAGGAGCTAAGGCGGAAATTGGAGCAGCTGAGCGAGAGGCTGAGCAAGCTCAAC 1352
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1332 AGTGAGCAGGAGCTAAGGCGGAAATTGGAGCAGCTGAGTGAGAGGCTGAGCAAGCTCAAC 1391
Query 1353 ACGTACTCCTCTTGGTTGAATATATTGACGCTTATGTCTCTCACCTGGCACTTTGTTTAT 1412
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1392 ACGTACTCCTCTTGGTTGAATATATTGACGCTTATGTCTCTAACCTGGCACTTTGTTTAT 1451
Query 1413 CTTGGCCAGAGACTCGGCACCGCTTGTTGATC 1444
|| || |||||||||||| |||||||||||||
Sbjct 1452 CTCGGTCAGAGACTCGGCGCCGCTTGTTGATC 1483
Score = 1033 bits (559), Expect = 0.0
Identities = 671/725 (93%), Gaps = 7/725 (1%)
Strand=Plus/Plus
Query 1 ATATGAAGAGAGGAGGAAACATCACCGATAAGTAAGTAATGACGAATCTTCTGGCCTTGT 60
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATATGAAGAGAGGAGGAAACAACACCGATAAGTAAGTAATGACGAATCTTTTGGCCTTGT 60
Query 61 GTCTTTTCTTGACCACTTTACTAGCGGCGGAGGTATGGTCTCCCAGCCCAGCCACGACCA 120
||||| |||||| |||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 61 GTCTTGTCTTGAGCACTTTACTAGCGGCGGAGGTATGGTCTCCGAGTCCAGCCATGACCA 120
Query 121 CCCACATA-AC-GC--CGCCGTCGGAGGGAGACGTCATCGTCAAAGATGGCCACCGTGTA 176
|||||| | || || | |||| |||||||| |||||||||||||| || |||| ||
Sbjct 121 CCCACA-ACACGGCGGTGGCGTCAGAGGGAGAAGTCATCGTCAAAGACGGACACCACGTT 179
Query 177 GTGGTGGTTGAGTACGATCGCGACGGGAAAACTAATACCAGAGTCTCGATCTCGCCACCA 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 GTGGTGGTTGAGTACGATCGCGACGGGAAAACCAATACCAGAGTCTCGATCTCGCCACCA 239
Query 237 TCGGCAGATCaaggagaagaaaaagagaatgaagaagagaagggaacttctttgattaga 296
|||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||
Sbjct 240 TCGGCAGATCAAGGAGAAGAAAAAGAGAATGAAGTAGAGATGGGAACTTCTATGTTTAGA 299
Query 297 aatgttaaagagaaagCAAAAGAAACGGCGTCGTATCTTCCACATGTCGGCCAAGGAATC 356
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 AATGTTAAAGAGAAAGCTAAAGAAACGGCGTCGTATCTTCCACACGTCGGCCAAGGAATC 359
Query 357 TCGCAGCCGGTGATGACAGAGGAGGCGCGTGATCACCACGCGACGGCTGGGGAAGTTATA 416
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 360 TCCCAGCCGGTGATGACAGACGAGGCGCGTGATCACCACGCGACGGCTGGGGAAGTCATA 419
Query 417 TGCGACGCGTTCGGTAAGTGCAGGCAGAAGATCGCGAGTGTGGTCGGTCGGGCTAAAGAC 476
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 TGCGATGCGTTCGGCAAGTGCAGGCAGAAGATCGCGAGTGTGGTAGGTCGGGCTAAAGAC 479
Query 477 CGAACGGCCGATTCCGTCGGCGAGACTGCTTCTGATGT-AGGAGAAGCCGCGGCTCAGAA 535
|| || | ||||||||||||||||| ||||||||||| | |||||||||| ||||| ||
Sbjct 480 CGCACCGTTGATTCCGTCGGCGAGACAGCTTCTGATGTCA-GAGAAGCCGCCGCTCATAA 538
Query 536 GGCTCACGATGTGAAGGAGACGGTTACACATGCGGCACGTGACGTGGAAGACACGGTGGC 595
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGCTCACGATGTGAAGGAAACGGTTACACATGCGGCACGTGACGTGGAAGACACGGTGGC 598
Query 596 TGATCAAGCCCAGTATGCTAAGGGTAAGGTAACAGAGAAGGCCCATGATGTGAAAGAGAG 655
|||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| |
Sbjct 599 TGATCAAGCCCAGTATGCTAAGGGTAGGGTAACAGAAAAGGCCCATGATCCGAAAGAGGG 658
Query 656 TGTAGCCCATAAAGCCCATGATGCTAAAGAGAGTGTAGCCCATAAAGCCCATGATGCTAA 715
|||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 659 TGTAGCCCATAAAGCCCATGATGCGAAAGAGAGTGTGGCTGATAAAGCCCATGATGCGAA 718
Query 716 AGAGA 720
|||||
Sbjct 719 AGAGA 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999614230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5