BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476363
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72340.1 | Symbols: | NagB/RpiA/CoA transferase-like superf... 1814 0.0
AT1G53900.1 | Symbols: | Eukaryotic translation initiation fac... 619 2e-176
AT1G53880.1 | Symbols: | Eukaryotic translation initiation fac... 619 2e-176
> AT1G72340.1 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr1:27236875-27238612 FORWARD LENGTH=1302
Length=1302
Score = 1814 bits (982), Expect = 0.0
Identities = 1117/1183 (94%), Gaps = 6/1183 (1%)
Strand=Plus/Plus
Query 1 AAAAAACAAAATCAATGTGGCGGAGATCACCGTCGTTTATCCTCGACGAGCGACGAAGCT 60
|||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 10 AAAAAAAAAAATCAATGTGGAGAAGATCACCGTCGTTTATTCTCGACGAGCGACGAAGCT 69
Query 61 CGAATTCACCTCCCATGGCCGATACAACACGAGGTCCCTTTCAAAACCCTGATTCGATCT 120
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 70 CGAATTCACCTCCAATGGCGGATACAACACGAGGTCCTTTTCAAAACCCTGATTCCATCT 129
Query 121 CCGCTTATTACCAAACCCGCGCGGCGCATCACGGTGTCATTACTAGCGACTGGCTAGCCC 180
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 130 CCGCTTATTACCAAACTCGCGCGGCGCATCACGGTGTCATTACAAGCGACTGGCTAGCCC 189
Query 181 AAGCTCAAGCCGCCGTTGGCGGGGTCACAGGCGAAGAGCAATC-TCTCTCATCCGATAA- 238
|||||||||||||||||||||| ||| ||||||| | | | | | || ||||| |||
Sbjct 190 AAGCTCAAGCCGCCGTTGGCGGCGTCTCAGGCGATG-CCCAGCATGACTTATCCG-TAAC 247
Query 239 TCAGCT-GGGAACGGAGAAGTCGTTTAATGTAATTGAAGAGTTCAACAACTGGAGAAAGC 297
| | || |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 248 TGATCTCGGGAAC-GAGAAGTCGTTTAATGTAATTGAAGAGTTCAATAACTGGAGAAAAC 306
Query 298 AACCGGATCTGGCTGAGGCCGTCGCGGCTATTCGAGCTCTCGCTGCGGTTATTCGTGCGA 357
|||||||||||||||| |||||||||||||| |||||| | ||||| |||||||||||||
Sbjct 307 AACCGGATCTGGCTGAAGCCGTCGCGGCTATACGAGCTTTGGCTGCTGTTATTCGTGCGA 366
Query 358 GCGAAGCTAGCACTATGATGGAGCTTGAAATTGAGCTCAAAAAGGCTTCTGATACACTCA 417
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GCGAAGCGAGCACCATGATGGAGCTTGAAATTGAGCTCAAAAAGGCTTCTGATACACTCA 426
Query 418 AATCATGGGACAAAACATCAATCTCTTTGACTGCTGGATGCGATTTGTTTATCAGATACG 477
| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 427 AGTCGTGGGACAAAACGTCGATCTCTTTGACAGCTGGATGCGATTTGTTTATCAGATACG 486
Query 478 TTACGAGAACCTCTGCTTTAGAATACGAAGATTTCAATTCAGCAAAGTCTCGTCTTCTTG 537
|||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 487 TTACGAGAACGTCTGCTTTGGAATATGAAGATTTCAATTCAGCTAAGTCTCGTCTTCTTG 546
Query 538 AACGTGCTGAGAAATTTGGGGAAATTTCTTGCAAGGCTCGTAGGATTATCGCAATGCTTA 597
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 547 AACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCTCGTAGGATTATCGCAATGCTTA 606
Query 598 GTCAAGATTTCATATTCGATGGTTGTACCATATTGGTTCATGGACTCTCAAGAGTTGTTC 657
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 607 GTCAAGATTTTATATTCGATGGTTGTACCATATTGGTTCATGGACTCTCTAGAGTTGTTC 666
Query 658 TGGAAATACTAAAGACTGCTGCACAAAACAACAAGCTCTTTCGAGTTCTCTGCACAGAGG 717
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGAAATACTTAAGACTGCTGCACAAAACAACAAGCTCTTTCGAGTTCTCTGCACAGAGG 726
Query 718 GAAGGCCGGATGGAACAGGAGTTTTGTTATCGAGTGAGCTATCGAAGCTTGATATCCCAG 777
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 727 GGAGGCCGGATGGAACAGGAGTTCTGTTATCGAGTGAGCTATCGAAGCTCGATATCCCAG 786
Query 778 TGAAACTACTGCTTGATTCAGCTGTGGCGTATAGCATGGACGAGGTAGACATGGTGTTTT 837
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 787 TGAAACTACTGCTTGATTCAGCTGTGGCGTATAGTATGGACGAGGTAGACATGGTGTTTG 846
Query 838 TCGGGGCAGATGGAGTTGTAGAAAGCGGCGGTATTATCAACATGATGGGAACATACCAAA 897
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 847 TCGGGGCGGATGGAGTTGTAGAAAGTGGCGGTATTATCAACATGATGGGAACATACCAAA 906
Query 898 TCGCACTCGTGGCCCACAGCATGAACAAACCGGTCTATGTCGCCGCCGAGAGTTACAAGT 957
||||||| ||||| |||||||||||||||||||||||||| || || |||||||||||||
Sbjct 907 TCGCACTTGTGGCACACAGCATGAACAAACCGGTCTATGTTGCTGCTGAGAGTTACAAGT 966
Query 958 TCGCTAGGCTTTACCCATTAGACCAAAAGGACATGGCACCAGCGCTGAGACCAATCGAAT 1017
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 967 TCGCTAGGCTTTACCCATTAGACCAAAAGGACATGGCACCGGCGTTGAGACCAATCGAAT 1026
Query 1018 TTGGTGTAAAGATTCCGACAAAGGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCCGC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 TTGGTGTAAAGATTCCGACAAAGGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCCGC 1086
Query 1078 CTCAGTACCTAACGCTCCTCTTCACGGACCTTGGCGTTCTCTCTCCCTCTGTAGTTAGCG 1137
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1087 CTCAGTACCTAACACTCCTCTTCACTGACCTTGGTGTTCTCTCTCCCTCTGTAGTTAGCG 1146
Query 1138 ATGAGCTTATTCAACTCTATCTCTAATTTCAACTCCTAATTAA 1180
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 ATGAGCTTATTCAACTCTATCTCTAATTTCAACTCCTAATTAA 1189
> AT1G53900.1 | Symbols: | Eukaryotic translation initiation factor
2B (eIF-2B) family protein | chr1:20127634-20131050 FORWARD
LENGTH=1959
Length=1959
Score = 619 bits (335), Expect = 2e-176
Identities = 701/877 (80%), Gaps = 28/877 (3%)
Strand=Plus/Plus
Query 288 TGGAGAAAGCAACCGGATCTGGCTGAGGCCGTCGCGGCTATTCGAGCTCTCGCTGCGGTT 347
|||||| ||||||| ||| |||| ||||| || ||||| ||||| ||||| || || |||
Sbjct 868 TGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATTCGTGCTCTTGCGGCTGTT 927
Query 348 ATTCGTGCGAGCGAAGCTAGC-ACTATGATGGAGCTTGAAATTGAGCTCAA-AAAGGCTT 405
||| | || || ||||||| | ||||||||||| ||||||||||| ||||| ||| ||||
Sbjct 928 ATTAGGGCTAGTGAAGCTA-CTACTATGATGGAACTTGAAATTGAACTCAAGAAA-GCTT 985
Query 406 CTGATACACTCAAATCATGGGACAAAACATCAATCTCTTTGACTGCTGGATGCGATTTGT 465
||||||| || ||||||||||||| ||| || || || || || || ||||| ||| | |
Sbjct 986 CTGATACTCTGAAATCATGGGACACAACGTCGATATCCTTAACAGCGGGATGTGATCTAT 1045
Query 466 TTAT-CAGATACGTTACGAGAACCTCTGCTTTAGAATACGAAGATTTCAATTCAGC-AAA 523
| || | | || || || |||| ||||||||||||| || || ||||| || || |||
Sbjct 1046 TCATGC-GCTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAACTCTGCGAAA 1104
Query 524 GTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATTTCTTGCAAGGCTCGTAGGAT 583
|| ||| | ||||||||||||||||||||||||||||| ||||||||||| || | |||
Sbjct 1105 -TCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCCCGAACGAT 1163
Query 584 TATCGCAATGCTTAGTCAAGATTTCATATTCGATGGTTGTACCATAT-TGGTTCATGGAC 642
|| |||||||||||||||||||||||||| ||||| ||||| || | |||| |||||
Sbjct 1164 AATTGCAATGCTTAGTCAAGATTTCATATTTGATGGGTGTACTAT-TCTGGTCCATGGTT 1222
Query 643 TCTCAAGAGTTGT-TCTGGAAATACTAAAGAC-TGCTGCACAAAACAACAAGCTCTTTCG 700
|||| |||||||| | || ||||||||||||| | | || |||||||| || ||||||||
Sbjct 1223 TCTCCAGAGTTGTGTTTG-AAATACTAAAGACAT-CAGCGCAAAACAAGAAACTCTTTCG 1280
Query 701 AGT-TCTCTGCACAGAGGGAAGGCCGGATGGAACAGGAGTTTTGTTATCGAGTGAGCTAT 759
||| | | ||||||||||||||||| ||| |||||| || || || | | ||||| |
Sbjct 1281 AGTGT-TGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACTGCTAGCTAACGAGCT-T 1338
Query 760 -CGAAGCTTGATATCCCAGTGAAACTACTGCTTGATTCAGCTGTGGCGTATAGCATGGAC 818
| || |||||||| || ||||| || ||| | |||||||| ||||| |||||||||||
Sbjct 1339 GCAAAACTTGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGTGGCCTATAGCATGGAT 1398
Query 819 GAGGTAGACATGGTGTTT-TTCGGGGCAGATGGAGTTGTAGAAAGCGGCGGTATTATCAA 877
|| ||||||||||||||| || || || |||||||| || ||||| ||||| || || ||
Sbjct 1399 GAAGTAGACATGGTGTTTGTT-GGAGCTGATGGAGTAGTTGAAAGTGGCGGGATAATTAA 1457
Query 878 CATGATGGGAACATACCAAATCGCACTCGTGGCCCACAGCATGAACAAACCGGTCTATGT 937
|||||||||||| ||||||||||| || || || || || ||||| ||||| ||||||||
Sbjct 1458 CATGATGGGAACTTACCAAATCGCCCTAGTCGCACAGAGTATGAATAAACCAGTCTATGT 1517
Query 938 CGCCGCCGAGAGTTACAAGTTCGCTA-GGCTTTACCCATTAGACCAAAAGGACATGGCAC 996
|| || |||||||||||||| || | |||| ||||| || || ||||||||| | | ||
Sbjct 1518 AGCTGCAGAGAGTTACAAGTTTGC-ACGGCTCTACCCGTTGGATCAAAAGGACTTAGAAC 1576
Query 997 CAGCGCT-GAGACCAATCGAATTTG-GTGTAAA-GATTCCGACAAAGGTGGAAGTAGAGA 1053
|||| || | |||| || || ||| |||| | |||| | ||||| || ||||| |
Sbjct 1577 CAGC-CTTGCGACCTATTGA-TTTCAGTGTTCCTG-TTCCTCCTAAGGTTGAGGTAGAAA 1633
Query 1054 GGTCAGCTCGAGACTATACTCCGCCTCAGTACCTAACGCTCCTCTTCACGGACCTTGGCG 1113
| || || | ||||| ||||| ||||||||| | || || |||||||| || ||||| |
Sbjct 1634 GATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTACTCTTCACTGATCTTGGTG 1693
Query 1114 TTCTCTCTCCCTCTGTAGTTAGCGATGAGCTTATTCA 1150
||||| |||| |||||||| || || |||||||||||
Sbjct 1694 TTCTCACTCCATCTGTAGTAAGTGACGAGCTTATTCA 1730
> AT1G53880.1 | Symbols: | Eukaryotic translation initiation factor
2B (eIF-2B) family protein | chr1:20115069-20118485 FORWARD
LENGTH=1959
Length=1959
Score = 619 bits (335), Expect = 2e-176
Identities = 701/877 (80%), Gaps = 28/877 (3%)
Strand=Plus/Plus
Query 288 TGGAGAAAGCAACCGGATCTGGCTGAGGCCGTCGCGGCTATTCGAGCTCTCGCTGCGGTT 347
|||||| ||||||| ||| |||| ||||| || ||||| ||||| ||||| || || |||
Sbjct 868 TGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATTCGTGCTCTTGCGGCTGTT 927
Query 348 ATTCGTGCGAGCGAAGCTAGC-ACTATGATGGAGCTTGAAATTGAGCTCAA-AAAGGCTT 405
||| | || || ||||||| | ||||||||||| ||||||||||| ||||| ||| ||||
Sbjct 928 ATTAGGGCTAGTGAAGCTA-CTACTATGATGGAACTTGAAATTGAACTCAAGAAA-GCTT 985
Query 406 CTGATACACTCAAATCATGGGACAAAACATCAATCTCTTTGACTGCTGGATGCGATTTGT 465
||||||| || ||||||||||||| ||| || || || || || || ||||| ||| | |
Sbjct 986 CTGATACTCTGAAATCATGGGACACAACGTCGATATCCTTAACAGCGGGATGTGATCTAT 1045
Query 466 TTAT-CAGATACGTTACGAGAACCTCTGCTTTAGAATACGAAGATTTCAATTCAGC-AAA 523
| || | | || || || |||| ||||||||||||| || || ||||| || || |||
Sbjct 1046 TCATGC-GCTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAACTCTGCGAAA 1104
Query 524 GTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATTTCTTGCAAGGCTCGTAGGAT 583
|| ||| | ||||||||||||||||||||||||||||| ||||||||||| || | |||
Sbjct 1105 -TCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCCCGAACGAT 1163
Query 584 TATCGCAATGCTTAGTCAAGATTTCATATTCGATGGTTGTACCATAT-TGGTTCATGGAC 642
|| |||||||||||||||||||||||||| ||||| ||||| || | |||| |||||
Sbjct 1164 AATTGCAATGCTTAGTCAAGATTTCATATTTGATGGGTGTACTAT-TCTGGTCCATGGTT 1222
Query 643 TCTCAAGAGTTGT-TCTGGAAATACTAAAGAC-TGCTGCACAAAACAACAAGCTCTTTCG 700
|||| |||||||| | || ||||||||||||| | | || |||||||| || ||||||||
Sbjct 1223 TCTCCAGAGTTGTGTTTG-AAATACTAAAGACAT-CAGCGCAAAACAAGAAACTCTTTCG 1280
Query 701 AGT-TCTCTGCACAGAGGGAAGGCCGGATGGAACAGGAGTTTTGTTATCGAGTGAGCTAT 759
||| | | ||||||||||||||||| ||| |||||| || || || | | ||||| |
Sbjct 1281 AGTGT-TGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACTGCTAGCTAACGAGCT-T 1338
Query 760 -CGAAGCTTGATATCCCAGTGAAACTACTGCTTGATTCAGCTGTGGCGTATAGCATGGAC 818
| || |||||||| || ||||| || ||| | |||||||| ||||| |||||||||||
Sbjct 1339 GCAAAACTTGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGTGGCCTATAGCATGGAT 1398
Query 819 GAGGTAGACATGGTGTTT-TTCGGGGCAGATGGAGTTGTAGAAAGCGGCGGTATTATCAA 877
|| ||||||||||||||| || || || |||||||| || ||||| ||||| || || ||
Sbjct 1399 GAAGTAGACATGGTGTTTGTT-GGAGCTGATGGAGTAGTTGAAAGTGGCGGGATAATTAA 1457
Query 878 CATGATGGGAACATACCAAATCGCACTCGTGGCCCACAGCATGAACAAACCGGTCTATGT 937
|||||||||||| ||||||||||| || || || || || ||||| ||||| ||||||||
Sbjct 1458 CATGATGGGAACTTACCAAATCGCCCTAGTCGCACAGAGTATGAATAAACCAGTCTATGT 1517
Query 938 CGCCGCCGAGAGTTACAAGTTCGCTA-GGCTTTACCCATTAGACCAAAAGGACATGGCAC 996
|| || |||||||||||||| || | |||| ||||| || || ||||||||| | | ||
Sbjct 1518 AGCTGCAGAGAGTTACAAGTTTGC-ACGGCTCTACCCGTTGGATCAAAAGGACTTAGAAC 1576
Query 997 CAGCGCT-GAGACCAATCGAATTTG-GTGTAAA-GATTCCGACAAAGGTGGAAGTAGAGA 1053
|||| || | |||| || || ||| |||| | |||| | ||||| || ||||| |
Sbjct 1577 CAGC-CTTGCGACCTATTGA-TTTCAGTGTTCCTG-TTCCTCCTAAGGTTGAGGTAGAAA 1633
Query 1054 GGTCAGCTCGAGACTATACTCCGCCTCAGTACCTAACGCTCCTCTTCACGGACCTTGGCG 1113
| || || | ||||| ||||| ||||||||| | || || |||||||| || ||||| |
Sbjct 1634 GATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTACTCTTCACTGATCTTGGTG 1693
Query 1114 TTCTCTCTCCCTCTGTAGTTAGCGATGAGCTTATTCA 1150
||||| |||| |||||||| || || |||||||||||
Sbjct 1694 TTCTCACTCCATCTGTAGTAAGTGACGAGCTTATTCA 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5