BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476373 Length=718 Score E Sequences producing significant alignments: (Bits) Value AT1G72416.3 | Symbols: | Chaperone DnaJ-domain superfamily pro... 839 0.0 > AT1G72416.3 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:27258856-27260291 REVERSE LENGTH=1057 Length=1057 Score = 839 bits (454), Expect = 0.0 Identities = 624/699 (89%), Gaps = 39/699 (6%) Strand=Plus/Plus Query 1 GCACGATACCCAAAATATCAAACtcttcttc-ttt---aac-c-t-tc-tcttctcttct 52 ||||||||||||||||||||||||||||||| ||| | | | || ||||||||||| Sbjct 1 GCACGATACCCAAAATATCAAACTCTTCTTCTTTTCCCTTCTCTTCTCTTCTTCTCTTCT 60 Query 53 tcCACGTTTACGCGTATCCACA-CATCTATACATTCATTAATCTCGATCTTTCTTTATCT 111 ||||||||||||||||| |||| | ||||||||| ||||||||| |||| |||||||||| Sbjct 61 TCCACGTTTACGCGTATACACATC-TCTATACATACATTAATCTTGATCCTTCTTTATCT 119 Query 112 CTTTGCTTCTAATAAACTCCAACGAAGTGCTCTTGCTTTTTCTCATTCTTATATATCATC 171 ||||||||| |||||||||||| ||| |||||| |||||||||||||||| ||||||| Sbjct 120 CTTTGCTTCCAATAAACTCCAAAGAACAGCTCTTTCTTTTTCTCATTCTTA-CTATCATC 178 Query 172 ATCAATGGAGAAG-GAAGACTTGTACGCTGT-TATGGATTTGAACAATGAATGTACACAA 229 || ||||||| || ||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 179 ATTAATGGAG-AGAGAAGACTTGTACGCTGTCT-TGGATTTGAACAACGAATGTACACAA 236 Query 230 AGAGATCTCAAACTTTCTTACAAGAACCTTGCTCTGAAATGGCATCCAGATCGGTTTCTT 289 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 237 GGAGATCTCAGACTTTCTTACAAGAACCTTGTTCTGAAATGGCATCCAGATCGGTTTCTT 296 Query 290 GAAGATATTGAGAAAGATGAAGCCAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 349 ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 297 GAAGAAATAGAGAAAGATGAAGCTAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 356 Query 350 GTTTTGTCGGATTCCAACAAGAGGCTGTTGTATGACGTCGGTGCTTATGACAGTGATGAC 409 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 357 GTTTTGTCGGATTCCAACAAGAGGCTTTTGTATGACGTCGGTGCTTATGATAGTGATGAC 416 Query 410 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTGATGGCTCAAACTCAA 469 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 417 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTTATGGCTCAAACTCAA 476 Query 470 TCTACGGGTGACGAAAGTTTAGAGGAATTTGAAGAGTTGTTTGAAGAATTATTGAAGGAT 529 |||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||| Sbjct 477 TCTACGGGGGACGAAAGTTTAGAGGAATTTGAAGAGTTATTTCAAGAATTGTTGAAGGAT 536 Query 530 GATGTGAATCAATTCAAAACTCGTTCGTATTCG-C--CG-GTT---AAT---G-G-CACG 577 |||||||||||||||||||||||||| | |||| | | ||| ||| | | |||| Sbjct 537 GATGTGAATCAATTCAAAACTCGTTCATCTTCGTCTTCATGTTCGCAATTTAGTGGCACG 596 Query 578 TCGG-T--G--C-ATCGCGATGATTTATCAAAT------GATATTCCGAATAAAATTAAC 625 ||| | | | || ||||||||||||||||| |||||||| || ||||||||| Sbjct 597 TCGACTTTGGTCCATTGCGATGATTTATCAAATTCAAATGATATTCCCAACAAAATTAAC 656 Query 626 GCTCATGACAACTGTTGTTGTATAAGTTCTAGTAAGGTA 664 | ||||||||||| ||||||||||||||||||||||||| Sbjct 657 GGTCATGACAACTATTGTTGTATAAGTTCTAGTAAGGTA 695 Score = 106 bits (57), Expect = 3e-22 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 659 AAGGTAGGTGGTCCATCGACGAGATTCCAAGTTGGCAATAGAAGATCTAAGAAGTAGAGC 718 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 862 AAGGTAGGTGGTCCATCGACGAGATTCCAAGCTGGCAATAGAAGATCTAAGAAGTAGAGC 921 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34812263871 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5