BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476384
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72510.1 | Symbols: | Protein of unknown function (DUF1677)... 1341 0.0
AT2G09970.1 | Symbols: | Protein of unknown function (DUF1677)... 749 0.0
> AT1G72510.1 | Symbols: | Protein of unknown function (DUF1677)
| chr1:27303389-27304850 FORWARD LENGTH=1381
Length=1381
Score = 1341 bits (726), Expect = 0.0
Identities = 1143/1323 (86%), Gaps = 114/1323 (9%)
Strand=Plus/Plus
Query 26 GAAACGAGAGATTCGAGTGAT-TTTTATGAACTACTAGT-GttttttttttCCGTGAAGT 83
||||||||||||||||||||| ||||||||||||||| | | | ||||||||||||||||
Sbjct 63 GAAACGAGAGATTCGAGTGATGTTTTATGAACTACTACTAG-TGTTTTTTTCCGTGAAGT 121
Query 84 AAAAGAGAAAGGGTAAC-TTTTCAATTTGATTTCAAGAAAAGCCAAAG------a-aa-- 133
||||||||| |||||| ||||| ||||| |||||||||||||||||| | ||
Sbjct 122 -AAAGAGAAACGGTAACTTTTTCTATTTGTTTTCAAGAAAAGCCAAAGAAAAAAAGAATT 180
Query 134 ---aa-a-a-------TTTTGCAATGGTTTTGTTTTGTGAAATTTTTCTCGGAGAAGAAA 181
|| | | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTTAATATACTCTGTTTTTTGCAATGATTTTGTTTTGTGAAATTTTTCTCGGAGAAGAAA 240
Query 182 GTAATTTAGAAGACGGAGAGTGGCAAAACGATAGATaaaaaaaaaCAAATAGTATTCCAA 241
||||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||| ||
Sbjct 241 GTAATTTAGAAGACGGAGAGTGGCAAAACGA-A-ATATAAAAAAA-AAA--GTTTTC-AA 294
Query 242 TTTCTTTTAAGaaaaaaaaaGtttttttCTCTTTTTAGAAACCCTTCCTCTGTTTCAGAA 301
||||||||||||||||||||| ||||| | ||| ||| ||||||||||||||||||||||
Sbjct 295 TTTCTTTTAAGAAAAAAAAAGCTTTTTCC-CTTCTTA-AAACCCTTCCTCTGTTTCAGAA 352
Query 302 ACAGAGACAAAACAAGAAGATAGATCACAAGCTAATTGCGTTCTCTTCTCCTTCTACTGG 361
||||||||| || ||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct 353 ACAGAGACATAAGAAGAAAATAGATCACAAGCTAATTGCGTTCTCTTCTC-TTCTTCTTC 411
Query 362 TAAT---TTTTAAA-TCAAGAAACCATGTCTGCGAGTGTACTAAGTGATCCAACAATGCT 417
|| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 412 TACTGGGTTTTAAAATCAAGAAACCATGTCTGCGAGTGTTCTAAGTGATCCAACAATGCT 471
Query 418 AATTTCAACACCAGAGGTAATAATCGTCTCTCCGACGCCGGCAACACAGATCTCCGGCGA 477
|||||||||||| ||||||||| ||||||||||| ||| || || |||||||| ||
Sbjct 472 AATTTCAACACCGGAGGTAATACTCGTCTCTCCGGTATCGGTTACTCAAATCTCCGGAGA 531
Query 478 TGAGCCAGATTCGGTGACGTGTGACTGTTGCGGATTAACCGAGGAGTGTACACAATCGTA 537
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 532 TGAGCCAGATTCGGTGACGTGTGATTGTTGCGGATTAACCGAGGAGTGTACCCAATCGTA 591
Query 538 CATAGAGATGATCAGAGAGCGTTACATGGGGAAATGGATCTGTGGACTTTGTTCTGAAGC 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CATAGAGATGGTCAGAGAGCGTTACATGGGGAAATGGATCTGTGGACTTTGTTCTGAAGC 651
Query 598 TGTGAAGTATGAAGTCATAAGAACTAAACGATTGCTAACTACAGAGGAAGCCATGGCAAG 657
|||||||||||||||||| ||||| ||| ||||| |||| ||||||||||| ||||| ||
Sbjct 652 TGTGAAGTATGAAGTCATGAGAACGAAAAGATTGTTAACGACAGAGGAAGCTATGGCCAG 711
Query 658 ACACATGAACATGTGTAATAAGTTCAAATCCTCAAGCCCTCCACCGAATCCGACCGGACA 717
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 712 ACACATGAACATGTGTAATAAGTTCAAATCCTCAAGCCCACCACCGAATCCGACAGGACA 771
Query 718 TTTGATCTCTGCGATGAGACAGATCTTGAGAAGAAGCTTAGATTCACCAAGAATGCTTAG 777
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 772 TTTGATCTCTGCCATGAGACAGATCTTGAGAAAAAGCTTAGATTCACCAAGAATGCTTAG 831
Query 778 ATCTATGCCTAATAGTCCTTCTAAAGACGACCAAGAT--T------G-T-GT-TT-CTAA 825
|||||||||||||||||| |||||||||||||||||| | | | || || ||||
Sbjct 832 ATCTATGCCTAATAGTCCATCTAAAGACGACCAAGATCATCATCATGATTGTGTTTCTAA 891
Query 826 TGTTTTGTCTAGGTCCGATAGCTGTTTCGCTAGTTTGACTT-AAAA--GCTCAT-----A 877
||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
Sbjct 892 TGTTTTGTCTAGGTCTGATAGCTGTTTCGCTAGTTTGACTTGAAAAAAGCTCATCGTTGA 951
Query 878 AA-------------CCGTCGGTTTAGG-ACCCACCTGGATTAAATCCGGTTTTCAGATT 923
|| ||||||||||||| |||||| ||||| ||||||||||||| ||||
Sbjct 952 AAAAATTGTTTTAAACCGTCGGTTTAGGGACCCACTTGGATCAAATCCGGTTTTCTGATT 1011
Query 924 TGAAAATTTCGTCGGTAAACCAAAAATTGGTCTCTGTATGTGTTTTTGCCGGATTTGT-- 981
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1012 TGAAATTTTCGTCGGTAAATCAAAAATTGGTTTCTGTATGTGTTTTTGCCGGATTTGTTG 1071
Query 982 ----ACTTGTGGAAAATTTTGGGCTAAAAGAATAATTTGGTGCTCTGTTTCTTTCTTTTA 1037
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1072 TTGTACTTTTGGAAAATTTTGGGCTAAAAGAATAATTTGGTGCTCTGTTTCTGTCTTTTA 1131
Query 1038 TTCTTTCTCCAATTGCTAA-TAACTTTATAAGGG-TTCGGAATTG-TGTG--CTTAGTTA 1092
|||||||||||||||||| ||| | | | || ||| | ||| |||| ||||||||
Sbjct 1132 TTCTTTCTCCAATTGCTAGCTAA-TAT-TC-GGAATTCTG--TTGCTGTGAGCTTAGTTA 1186
Query 1093 AACAAGAACAAAAT-A--T-----T---------C-----GATTATAATTAGATGATTAA 1130
|||||||||||||| | | | | |||||||||||||| |||||
Sbjct 1187 AACAAGAACAAAATGAAATGAAAATATGTTTATACTATTCGATTATAATTAGATAATTAA 1246
Query 1131 AAAGGGAGATTCTTTAGAGATTTATCAT-TTAGAAAAGACATGTATGAACAAAAACCATC 1189
|||| |||||||||||| ||||||||| || |||||||||||||||| ||||||||||
Sbjct 1247 GAAGG-AGATTCTTTAGAAATTTATCATATT-GAAAAGACATGTATGATCAAAAACCATG 1304
Query 1190 GAAGGTAGGGCCATGCTTATCTCTCTGATGATTCTCTATCACAAAATAGAAATGAAAAAG 1249
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1305 GAAGGTAGGGTCATGCTTATCTCTGTGATGATTCTCTATCACAAAATAGAAATGAAAAAG 1364
Query 1250 GTG 1252
|||
Sbjct 1365 GTG 1367
> AT2G09970.1 | Symbols: | Protein of unknown function (DUF1677)
| chr2:3779992-3780691 REVERSE LENGTH=700
Length=700
Score = 749 bits (405), Expect = 0.0
Identities = 605/696 (87%), Gaps = 36/696 (5%)
Strand=Plus/Plus
Query 366 TTTTAAATCAAGAAACCATGTCTGCGAGTGTACTAAGTGATCCAACAATGCTAATTTCAA 425
|||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct 3 TTTTAAATCAAGAAACCATGTCTGATAGTGTACTTAGTGATCCAACAATGTTAATTTCAA 62
Query 426 CACCAGAGGTAATAATCGTCTCTCCGACGCCGGCAACACAGATCTCCGGCGATGAGCCAG 485
|||| || |||||||| |||| || |||| ||||| || ||| ||||||||| ||
Sbjct 63 CACCGGATGTAATAATTATCTCAACGGTTCCGGTGACACAAATATCCAGCGATGAGCTAG 122
Query 486 ATTCGGTGACGTGTGACTGTTGCGGATTAACCGAGGAGTGTACACAATCGTACATAGAGA 545
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 123 ATTCGGTGACGTGTGACTGTTGCGGATTAACCGACGAGTGTACAGAATCGTACACAGAGA 182
Query 546 TGATCAGAGAGCGTTACATGGGGAAATGGATCTGTGGACTTTGTTCTGAAGCTGTGAAGT 605
|||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 183 TGATAAGAGAGCGTTACATAGGGAAATGGATCTCTGGATTTTGTTCTGAAGCTGTGAAGT 242
Query 606 ATGAAGTCATAAGAACTAAACGATTGCTAACTACAG-AG--GAAGCCATGGCAAGACACA 662
| ||||||| ||||| ||| |||| |||| |||| || ||||| ||||| |||||||
Sbjct 243 ACAAAGTCATGAGAACAAAAAGATTTTTAACAACAGAAGAAGAAGCTATGGCGAGACACA 302
Query 663 TGAACATGTGTAATAAGTTCAAATCCTCAAGCCCTCCACCGAATCCGACCGGACATTTGA 722
|||||| ||||||||||||||||||||||||||| ||| |||||| ||| |||||||||
Sbjct 303 TGAACAAGTGTAATAAGTTCAAATCCTCAAGCCCACCATCGAATCTGACAAGACATTTGA 362
Query 723 TCTCTGCGATGAGACAGATCTTGAGAAGAAGCTTAGATTCACCAAGAATGCTTAGATCTA 782
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 TCTCTGCGATGAGACAGATCTTGAGAAAAAGCTTAGATTCACCAAGAATGCTTAGATCTA 422
Query 783 TGCCTAATAGTCCTTCTAAAGACGA-C--------CA--A-GATTGTGTTTCTAATGTTT 830
||||||||||||| ||||||||||| | || | |||||||||||||||||||
Sbjct 423 TGCCTAATAGTCCATCTAAAGACGATCAAGATAATCATCATGATTGTGTTTCTAATGTTT 482
Query 831 TGTCTAGGTCCGATAGCTGTTTCGCTAGTTTGACTT-AAAA-GCTCAT-----AAA---- 879
|||||||||| ||||||||||||||||||||||||| |||| |||||| |||
Sbjct 483 TGTCTAGGTCTGATAGCTGTTTCGCTAGTTTGACTTGAAAAAGCTCATCGTTGAAAATAT 542
Query 880 ---------CCGTCGGTTTAGG-ACCCACCTGGATTAAATCCGGTTTTCAGATTTGAAAA 929
||| ||||||||| |||||| || || ||||||||||||| ||| ||||||
Sbjct 543 TGTTTAAAACCGACGGTTTAGGGACCCACTTGAATCAAATCCGGTTTTCTGATCTGAAAA 602
Query 930 TTTCGTCGGTAAACCAAAAATTGGTCTCTGTATGTGTTTTTGCCGGATTTGTACTTGTGG 989
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 603 TTTCGTCAGTAAACCAAAAATTGGTCTATGTATGTGTTTTTGCCGGATTTGTACTTGTGG 662
Query 990 AAAATTTTGGGCTAAAAGAATAATTTGGTGCTCTGT 1025
||| |||||||||||||||||||| |||||||||||
Sbjct 663 AAATTTTTGGGCTAAAAGAATAATATGGTGCTCTGT 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5