BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476385 Length=2896 Score E Sequences producing significant alignments: (Bits) Value AT1G72520.1 | Symbols: LOX4 | PLAT/LH2 domain-containing lipoxy... 4390 0.0 > AT1G72520.1 | Symbols: LOX4 | PLAT/LH2 domain-containing lipoxygenase family protein | chr1:27308515-27312754 FORWARD LENGTH=3042 Length=3042 Score = 4390 bits (2377), Expect = 0.0 Identities = 2725/2890 (94%), Gaps = 36/2890 (1%) Strand=Plus/Plus Query 5 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTGATCTTTGAGAGATCATCATCA 64 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 94 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTAATCTTCGAGAGATCATCATCA 153 Query 65 CTTGCGTCTCCGTTTCAATCGCGTTTCTCCACCAAGAAGAGGACACAGAGAACGCAGTTC 124 ||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||| Sbjct 154 CTTGCGTCTCCGTTTCATTCGCGTTTCTCCATCAAGAAGAAGACACAGAGAACACAGTTC 213 Query 125 TCCATCAACCCTTTTGATCCGAAACCTATAAGAGCTGTTAACTCCAGCGGCGTTGTAGCA 184 |||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||| Sbjct 214 TCCATCAACCCTTTTGATCCGAGACCTATGAGAGCCGTTAACTCAAGCGGCGTTGTAGCG 273 Query 185 GCCATCAGC---GA---GG---AAACGCTGCGTATTAGCACCGTCGGTAGAAAAC----- 230 ||||||||| || || ||||||||||||||||||| ||||||||||||| Sbjct 274 GCCATCAGCGAGGATTTGGTTAAAACGCTGCGTATTAGCACTGTCGGTAGAAAACAAGAG 333 Query 231 -AGGAGGAAGAGGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCGGTTGCGACGGTGAGG 289 |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 334 AAGGAGGAAGAAGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCAGTTGCGACGGTGAGG 393 Query 290 AACAAGAACAAGGAAGATTTTAAAGATACTCTGGTTAAGCATTTGGATGCTTTTACTGAT 349 ||||| ||||| || ||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 394 AACAAAAACAAAGAGGATTTTAAAGAAACTTTGGTTAAGCATTTGGATGCTTTTACTGAT 453 Query 350 AAAATCGGTAGAAACGTCGTCTTGGAGCTTATTAGTACCCAAGTTGATCCAAAAACGAAT 409 ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 454 AAAATTGGTAGAAACGTTGTCTTGGAGCTTATGAGTACCCAAGTTGATCCAAAAACGAAT 513 Query 410 GAGCCAAAGAAGAGTAAAGCGGCGGTATTGAAAGACTGGTCAAAGAAATCGAAAAT-AAA 468 ||||||||||||||||||||||| || |||||||| |||||||||||||| ||| | ||| Sbjct 514 GAGCCAAAGAAGAGTAAAGCGGCAGTTTTGAAAGATTGGTCAAAGAAATC-AAATTCAAA 572 Query 469 GGCGGAGAGAGTTCATTACACGGCGGAGTTCACGGTGGATTCCGCCTTTGGTTCGCCGGG 528 |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 573 GGCGGAAAGAGTCCATTACACGGCCGAGTTCACGGTGGATTCAGCCTTTGGTTCTCCGGG 632 Query 529 AGCCATCACGGTAACCAACAAACACCAAAAAGAGTTCTTCCTTGAGAGCATCACCATTGA 588 ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 633 AGCCATCACCGTGACCAACAAACACCAAAAAGAGTTCTTTCTTGAGAGCATCACCATCGA 692 Query 589 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCCCAAAAAGA 648 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 693 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCTCAAAAAGA 752 Query 649 CCATCCATCCAAACGAATTTTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 708 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 753 CCATCCATCCAAACGAATTCTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 812 Query 709 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGGAAAGGAGA 768 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 813 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGTAAAGGAGA 872 Query 769 AAGAAAATTATCAGACAGAATCTACGATTTTGATGTCTACAACGACATAGGAAATCCGGA 828 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 873 AAGAAAATTATCAGACAGAATCTACGATTATGATGTGTACAACGACATAGGAAATCCGGA 932 Query 829 CATATCACG-GAAACTAGCCCGTCCCACATTTGGTGGTCC-TAAATTTCCTTACCCTAGA 886 ||||||||| | ||||||||||||||||| ||||||| || | ||||||||||||||||| Sbjct 933 CATATCACGTG-AACTAGCCCGTCCCACACTTGGTGG-CCGTGAATTTCCTTACCCTAGA 990 Query 887 CGCTGTCGAACCGGCCGGTCTTCCACAGACACCGATATGATGTCTGAGAGGCGGGTGGAG 946 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 991 CGCTGTCGAACCGGCCGGTCTTCAACCGACACCGATATGATGTCTGAGAGGCGGGTGGAG 1050 Query 947 AAACCATTACCGATGTATGTGCCAAAAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1006 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1051 AAACCATTACCGATGTATGTGCCAAGAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1110 Query 1007 TTTGCTGCATGTAGGCTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1066 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 TTTGCTGCATGTAGACTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1170 Query 1067 ATTTTGGCTGAGGACTTCGCTAACTTCGGCGAGATCGATAGTCTTTACAAAGAAGGCTTG 1126 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1171 ATTTTGGCTGAGGACTTCGCTAACTTTGGTGAGATCGATAGTCTTTACAAAGAAGGCTTG 1230 Query 1127 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAGTTCCCTTTGCCTAAGATCGTC 1186 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 1231 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAATTCCCTTTACCGAAGATCGTC 1290 Query 1187 ACTACCCTCCAAAAATCAAGCGAAGGCTTGCTTAGATACGACACTCCAAAAATAGTTTCA 1246 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1291 ACTACCCTCCAAAAATCAAGCGAGGGCTTGCTTAGATACGACACTCCTAAAATAGTTTCA 1350 Query 1247 AAGGATAAATACGCATGGCTTAGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1306 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1351 AAGGATAAATATGCATGGCTTCGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1410 Query 1307 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCCGAG 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1411 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCTGAA 1470 Query 1367 ATCTACGGTCCAGGTCTTCACTCCGCTCTCACAGAAGACCACATCATCGGTTACCTTGAC 1426 |||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 1471 ATCTACGGACCAGGTCTTCACTCCGCTCTCACGGAAGACCACATCATCGGTCAACTTGAT 1530 Query 1427 GGCTTATCCGTACAACAAGCGTTAGAGACAAACCGATTGTTTATGGTGGACTACCATGAC 1486 |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1531 GGCTTAACCGTACAACAAGCGTTAGAGACGAACCGTTTGTTTATGGTGGACTACCATGAC 1590 Query 1487 ATATACTTACCGTTTCTAGATCGAATCAACGCGCTAGATGGACGCAAAGCTTACGCGACT 1546 ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| Sbjct 1591 ATATACTTACCGTTTCTAGATAGAATCAACGCGCTTGATGGACGCAAGGCTTACGCGACT 1650 Query 1547 CGAACCATATTGTTCTTGACCCGTCTAGGTACACTCAAGCCTATAGCGATCGAGCTAAGC 1606 ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||| Sbjct 1651 CGAACCATATTGTTCTTGACCCGACTCGGTACACTCAAGCCTATCGCCATCGAGCTAAGC 1710 Query 1607 CTCCCGTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1666 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1711 CTCCCTTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1770 Query 1667 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGATCTAATGACGCTGGT 1726 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1771 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGGTCCAATGACGCTGGT 1830 Query 1727 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCACGCGTGTTTAGAGCCGTTTATATTA 1786 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| Sbjct 1831 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCATGCGTGTTTGGAACCGTTTATATTA 1890 Query 1787 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1891 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1950 Query 1847 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGCGCGGACGGTGTG 1906 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1951 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGTGCGGACGGTGTG 2010 Query 1907 ATCGAGTCGTGCTTCACAGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 1966 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2011 ATCGAGTCGTGCTTCACTGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 2070 Query 1967 AACAAATGGCGGTTCGATATGGAAGGCCTCCCTGCTGATCTCATCCGAAGGGGAATGGCT 2026 |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 2071 AACAAATGGCGGTTTGATATGGAAGGTCTCCCTGCTGATCTCATCCGAAGGGGGATGGCT 2130 Query 2027 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTCGAAGACTACCCATACGCC 2086 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2131 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTTGAAGACTACCCATACGCC 2190 Query 2087 AACGACGGTCTCTTATTATGGTCCGCGATCCAAACCTGGGTCCGAACCTACGTGGAACGT 2146 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2191 AACGACGGTCTCTTATTATGGTCCGCAATCCAAACTTGGGTCCGAACCTACGTGGAACGT 2250 Query 2147 TATTACCCAGACCCGAATCTAATCCAAACCGACA-TCGAACTCCAAGCCTGGTACTCCGA 2205 |||||| || || |||| |||||||||||||| | | || ||||||||||||||||| || Sbjct 2251 TATTACGCAAACTCGAACCTAATCCAAACCGATACT-GAGCTCCAAGCCTGGTACTCTGA 2309 Query 2206 GTCAATCAACGTAGGTCACGCCGATCACCGCGACGCCGAGTGGTGGCCGGAGCTTTCCAC 2265 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 2310 GTCAATCAACGTAGGTCACGCTGATCACCGCGACGCCGAGTGGTGGCCGAAGCTTTCCAC 2369 Query 2266 CGTCGAAGATCTCGTCTCTGTCATCACCACCATCATCTGGCTCGCCTCCGCACAACACGC 2325 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 2370 CGTCGAAGATCTCGTCTCCGTCATCACCACCATCATCTGGCTCGCCTCGGCACAACACGC 2429 Query 2326 TGCACTCAACTTCGGACAATATCCTTACGGCGGCTATGTCCCAAACCGGCCACCGTTGAT 2385 ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| | || Sbjct 2430 GGCACTCAACTTCGGACAATATCCTTACGGTGGCTACGTCCCGAACCGACCACCGCTAAT 2489 Query 2386 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCGCGAGTTTTATCGAAGATCCTCA 2445 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2490 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCACGAGTTTTATCGAAGATCCTCA 2549 Query 2446 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAGACGACGAAGTTTATGGCAGTGGT 2505 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 2550 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAAACGACGAAGTTTATGGCGGTGGT 2609 Query 2506 TGATACATTGTCAACACATTCACCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2565 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2610 TGATACATTGTCGACACATTCGCCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2669 Query 2566 GATATGGACCGGAGATGCTGAGATTGTTGATGCGTTTTATGGATTTTCGGCGGAAATCGG 2625 ||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 2670 GATATGGACTGGAGATGCTGAGATCGTAGATGCGTTTTATGGATTCTCGGCGGAAATCGG 2729 Query 2626 ACGGATAGAGAAGGAGATTGAGAAGAGGAATCGTGATCCTAGCCGTAGGAATCGGTGTGG 2685 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 2730 ACGGATAGAGAAGGAGATTGACAAGAGGAATCGTGATCCTAGCCGTAGGAATCGCTGTGG 2789 Query 2686 CGCCGGAGTTTTACCGTACGAGTTGATGGCTCCAAGTTCTGAACCCGGTGTTACGTGTAG 2745 ||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 2790 CGCGGGAGTGTTACCGTATGAGTTGATGGCTCCGAGTTCTGAACCGGGTGTTACGTGTAG 2849 Query 2746 AGGCGTGCCTAATAGTGTATCCATTTAGAATTATTAAATTTG--A--GTATAGAGAATTT 2801 ||| ||||||||||||||||| ||||||||||||| ||||| | ||||||||||||| Sbjct 2850 AGGAGTGCCTAATAGTGTATCTATTTAGAATTATTCAATTTTTCAAAGTATAGAGAATTT 2909 Query 2802 TATAAGTAAATAAATAGATTTTTGTCGCAAATATTTTGTATAGTTTATTTGCCGATGTTG 2861 |||||||| |||| |||||||| | |||| ||| | |||||||||||||| ||| Sbjct 2910 TATAAGTATATAATTAGATTTT-GACGCAG-TAT---G----GTTTATTTGCCGATATTG 2960 Query 2862 TAAAATTCTT 2871 |||||||||| Sbjct 2961 TAAAATTCTT 2970 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 143928959467 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5