BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476393 Length=872 Score E Sequences producing significant alignments: (Bits) Value AT1G72610.1 | Symbols: GLP1, ATGER1, GER1 | germin-like protein... 1273 0.0 > AT1G72610.1 | Symbols: GLP1, ATGER1, GER1 | germin-like protein 1 | chr1:27339114-27340044 REVERSE LENGTH=931 Length=931 Score = 1273 bits (689), Expect = 0.0 Identities = 830/894 (93%), Gaps = 25/894 (3%) Strand=Plus/Plus Query 1 ACACAGTTTATCCAACACCTCTCTATATAAACACTC--ga--ga-a-gagt-ag-aga-- 50 ||||||||||||| |||||||||||||||||||| | || || | |||| || ||| Sbjct 1 ACACAGTTTATCCCACACCTCTCTATATAAACACCCGAGACCGAGAGGAGTGAGAAGAGT 60 Query 51 a---aaaaagaaaagaaaagaagag-agT-TAGT--TCTTAAACCAATCATTCAAAAATG 103 | |||||||||||||||| |||| | | | | ||||||||||| ||||| |||||| Sbjct 61 AGGGAAAAAGAAAAGAAAAGTAGAGTACTATCTTCCTCTTAAACCAACCATTC-AAAATG 119 Query 104 ATGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 163 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 179 Query 164 TTCTGTGTCGCAAACCTGAAACGCGCTGACACGCCTGCGGGTTACCCTTGCATTCGTCCC 223 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 180 TTCTGTGTCGCAAACCTGAAACGCGCTGAAACCCCTGCGGGTTACCCTTGCATTCGTCCC 239 Query 224 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCCGGAAACACTACA 283 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 240 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCTGGAAACACTACA 299 Query 284 AACATCATCAGCGCCGCTGTCACGCCCGCTTTCGTC-GCTCAGTTCCCAGGTCTGAACGG 342 |||||||||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| Sbjct 300 AACATCATCAACGCCGCTGTCACACCCGCTTTCG-CAGCTCAGTTCCCGGGTCTGAACGG 358 Query 343 TCTAGGCCTCTCTACAGCTAGACTTGACCTAGCTCCTAAAGGTGTGATCCCAATGCACAC 402 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 359 TCTAGGCCTCTCTACAGCTAGACTTGACTTAGCTCCTAAAGGTGTGATCCCAATGCACAC 418 Query 403 TCACCCTGGTGCCTCTGAGGTTCTCTATGTCCTTGAC-GGCTCCATTACCGCTGGGTTTG 461 |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| Sbjct 419 TCACCCTGGTGCCTCTGAGGTTCTCTTTGTCCTT-ACTGGCTCCATTACCGCTGGGTTTG 477 Query 462 TCTCCTCTGCAAACGCTGTCTACGTGCAGACACTTAAACCAGGACAGGTCATGATTTTCC 521 ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 478 TCTCCTCGGCAAACGCTGTCTACGTGCAGACACTCAAACCAGGACAGGTCATGGTTTTCC 537 Query 522 CACAGGGATTGCTGCATTTCCAGATCAATGCAGGAAAATCCTCTGCAGCAGCCATTGTCA 581 ||||||| ||||| |||||||||||||| || |||||||||||||| ||||| |||||| Sbjct 538 CACAGGGCTTGCTTCATTTCCAGATCAACGCGGGAAAATCCTCTGCTTCAGCCGTTGTCA 597 Query 582 CATTCAACAGCGCTAGTCCGGGTCTGCAGATTCTCGATTTCGCACTCTTTGCTAACAATC 641 | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || Sbjct 598 CTTTCAACAGCGCTAATCCGGGTCTGCAGATTCTCGACTTCGCACTCTTTGCTAACAGTC 657 Query 642 TTCCCACTGAACTCGTTGTGGGTACTACTTTCCTTGACGCTACTACAGTCAAGAAGCTAA 701 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 658 TTCCCACTGAACTCGTCGTGGGTACTACTTTCCTTGACGCCACTACAGTCAAGAAGCTAA 717 Query 702 AGGGTGTTCTTGGAGGAACCGGCTaaaaaaaGACTTAGGACT-C-C-TTGACTAAAACAC 758 ||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| Sbjct 718 AGGGTGTTCTTGGAGGAACTGGCTAAAAAAAGACTTAGGACTACTCCTTGACTAAAACAC 777 Query 759 CAAAACCTGtttcttcttcttcttttctctttgattgattcttgtcttctctgttttgtg 818 |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| Sbjct 778 CAAAACCTGTTTCTTCATCTTTTTTTCTCTTTAATTGATTCTTGTCTTCTCTGTTTTGTG 837 Query 819 tcccgtgtaattcttcAAAACCTGTCAAAATGGTTACATTGTATGTGAGTTTTT 872 | || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 838 TGCCTTGTAATTCTTCAAAACCTGTCAAAATTGTTACATTGTATGTGAGTTTTT 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42548322509 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5