BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476397
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72640.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1640 0.0
> AT1G72640.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:27346349-27348256 REVERSE LENGTH=1108
Length=1108
Score = 1640 bits (888), Expect = 0.0
Identities = 1015/1073 (95%), Gaps = 22/1073 (2%)
Strand=Plus/Plus
Query 1 ATCCCGGTTTAGAGAAACCTCTTTCTCATCTAGAGGGTTACAGTGAACTCTTGGGAGA-- 58
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 1 ATCCCGGTTTAGAGAAACCTCTTTCTCATCTAGAGGGTTACTGTGAACTGTTGAGAGATT 60
Query 59 T----T---------GTGAGGACGAAACCTTATCTTTGTAGTTGCAGACATGGTGGGTAC 105
| | |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 TACAGTAGAAGCAAGGTGAGGACGAAACCTTATCTTTGTGGTTGCAGACATGGCGGGTAC 120
Query 106 TTCTCTACCTTCGTGTCTCCTCAGTCAAGGACCTTCGTTACTCTTCTGTTCTTCGAATCA 165
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTCTCTACCTTCGTGTCTCCTCAGTCAAGGACCTTCGTTACTCTTCTCTTCTTCGAATCA 180
Query 166 GGTCTCAGAA---ACTAAATGTCGAATTGCGATAACATCTGGAAAACGTTGTCGTGTTCG 222
|| ||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 181 GGACTCAGAAGCTAATAAATGTCGAATTGGGATAACATCTGGAAAACGTTGTCTTGTTCG 240
Query 223 TTGTTTCGCTAAGAAGAAAATCAGCTTTGTAGATCAGATTCTCGATTATATCGAAGGCGG 282
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 241 TTGTTTCGCTAAGAAGAAAATCAGTTTTGTGGATCAGATTCTCGATTATATCGAAGGCGG 300
Query 283 TCCAAAGCTTAGGAAATGGTATGGAGCGCCTGAACTTCGGCCAAAAGATGGATCTTTAAG 342
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 301 TCCCAAGCTTAGGAAATGGTATGGAGCTCCTGAACTTCGGCCAAAGGATGGATCTTTAAG 360
Query 343 TGGAGACGACGATGAATTTGAAGCAGAGGAAGCAA-AAGATGATCTTGATGGAGA-AAAT 400
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 361 TGGAGACGACGATGAATTTGAAGCAGAGGAA-AAAGAAGATGATCTTGATGGAGAGAAA- 418
Query 401 GACGTTGTTTTTGTAACGGATGGAGACAGTGATTTGGGTCAGATGATTATACTGCAACTG 460
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GACGTTGTTTTTGTAACTGATGGAGACAGTGATTTGGGTCAGATGATTATACTGCAACTG 478
Query 461 ATTGTGAAAGGGACTCGAGTTAAAGCACTTGTGAAGGACAAAAGAAAGGCTTTGGAAGCT 520
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATTGTGAAAGGAACTCGGGTTAAAGCACTTGTGAAGGACAAAAGAAAGGCTTTGGAAGCT 538
Query 521 TTTGGATCTTATGTTGAGTTGACGTCTGGAGATGCAAGCGACGAGCGTTTCTTAAAGAAA 580
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 TTTGGATCTTATGTTGAGTTGACGACTGGAGATGCAAGCGACGAGCGTTTCTTAAAGAAA 598
Query 581 GCTTTTAAGGGCGTTGGTGCGGTCATATCCCCGACTGAAGGTTTCTTATCGAATGTCAAG 640
||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 599 GCTTTTAAGGGTGTTGGTGCGGTCATATCCCCGACAGAAGGTTTCTTATCGATTGTCAAG 658
Query 641 AGTTTAAGAGGTGTAAAACATGCAGTTCTCTTGTCTCAGTTGTCTGTTTATGAAAGCAGC 700
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTTTTAGAGGTGTAAAACACGCAGTTCTCTTGTCTCAGTTGTCTGTTTATGAAAGCAGC 718
Query 701 GGCGGAATTCAAGCTATGATGAATAACAAAGCCAAAAAACTGGCTGAGCAAGATGAAAAC 760
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 719 GGCGGAATTCAAGCTATGATGAATAGCAAAGCCAAAAAACTGGCCGAGCAAGATGAAAAC 778
Query 761 ACCGTTATATCTTCGAATGTCCCCTATACAATCATAAGAACAGGCAAGCTGGAGAACAGT 820
||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 GCCGCTATATCTTCAAATGTCCCTTATACAATCATAAGAACAGGCAAGCTGGAGAACAGT 838
Query 821 CCTGGAGGGAATCAAGGCTTCAACTTTAGCGCGGGTGCTGCAGCCAAAGGAAGCATAAGC 880
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTGGAGGGAGTCAAGGCTTCAACTTTAGCGCGGGTGCTGCAGCCAAAGGAAGCATAAGC 898
Query 881 AAGGAAGATGCTGCTCGTATATGTGTTGAAGCGTTAAGTGTGATCCCACCAACAGGGTTG 940
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 AAGGAAGATGCTGCTCGTATATGTGTTGAAGCACTAAGTGTGATCCCACCAACAGGGTTG 958
Query 941 ATATTTGAGGTTACGAATGGAGAAGAAGTTGTATCTGACTGGGAAGGACAGTTGATGAAA 1000
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 959 ATATTTGAGGTTACGAATGGAGAAGAGGTTGTATCTGACTGGGAAGGACAATTGATGAAA 1018
Query 1001 GTGATGCAGAGACAGAGTGACAAGAAGTAAGCTTCAAAGCTGAGATGAACAGA 1053
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTGATGCAGAGACAGAGTGACAAGAAGTAAGCTTCAAAGCTGAGATGAACAGA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5