BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476408
Length=1909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72710.1 | Symbols: CKL2 | casein kinase 1-like protein 2 | ... 2979 0.0
> AT1G72710.1 | Symbols: CKL2 | casein kinase 1-like protein 2
| chr1:27372271-27376584 FORWARD LENGTH=2086
Length=2086
Score = 2979 bits (1613), Expect = 0.0
Identities = 1807/1897 (95%), Gaps = 27/1897 (1%)
Strand=Plus/Plus
Query 1 CCCTTCCCTTTTGGGATATTTTCGCCGCGTGGATTTGATATGTCGACTCTCTTTCGCCGG 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 CCCTTCCCTTTTGGGATATTTTCGCCGCGTGGA-TTGATATGACGACTCTCTTTCGCCGG 59
Query 61 AAGTCAATCGGAATCCATC-CCTACTTCTTCCTTCTACCCCTTTGAttttttttttGGCT 119
|||||||||||||||| | | |||||||||||| | |||||||| |||||||||||||
Sbjct 60 AAGTCAATCGGAATCC-GCGACAACTTCTTCCTTCAATCCCTTTGA-TTTTTTTTTGGCT 117
Query 120 CTACTTATTATCTCAGA-CTTCTCAAATCTTCAGGTCCAATCTCGTCTTCTGTTTGtttt 178
|||| ||||| || | | | |||||||||||||||||||||| |||||| ||||||||
Sbjct 118 CTAC---TTATCCCAAACCCT-TCAAATCTTCAGGTCCAATCTCTTCTTCTATTTGTTTT 173
Query 179 tt--tt-----tttCCGGCGAAAGGTAAAGCTCCTGGATTCTAGTGGTGGATATTAATCG 231
|| || ||||||||||||| |||||| ||||||| |||||||| || |||||
Sbjct 174 TTAATTAAAAAAATCCGGCGAAAGGTGAAGCTCTTGGATTCGAGTGGTGGCTAGTAATC- 232
Query 232 GGTTTCGGTAGTTTAGAAGTAG-TTGTAGGTTTTATCAGCTTTCGATTTGATGGAGCCGC 290
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 233 GATTTCGGTAGTTTAGAAGTAGTTTATAGGTTTTATCAGCTTTCGATTTGATGGAGCCGC 292
Query 291 GAGTCGGAAACAAGTTTCGGCTCGGAAGGAAGATCGGCGGTGGATCATTCGGAGAGATCT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GAGTCGGAAACAAGTTTCGGCTCGGAAGGAAGATCGGCGGTGGATCATTCGGAGAGATCT 352
Query 351 ATCTTGGTATCAATATCCAGACGAATGAAGAAGTGGCTATTAAACTTGAAAATGTGAAAA 410
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ATCTTGGTACCAATATCCAGACGAATGAAGAAGTGGCTATTAAACTTGAAAATGTGAAAA 412
Query 411 CTAAGCATCCTCAGTTGCTCTATGAATCAAAATTGTACAAAGTACTT-CAAGGAGGAACT 469
||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||
Sbjct 413 CTAAGCATCCTCAGTTGCTGTATGAATCAAAGTTGTACAAAGTA-TTACAAGGAGGAACT 471
Query 470 GGCGTTCCAAACGTTAAATGGTATGGTGTTGAAGGGGACTATAATGTCCTCGTGATAGAC 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GGCGTTCCAAACGTTAAATGGTATGGTGTTGAAGGGGACTATAATGTCCTCGTGATAGAC 531
Query 530 TTGTTGGGGCCTAGCCTTGAAGATCTATTCAATTTCTGTAGTAGGAAACTCTCACTAAAG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTGTTGGGGCCTAGCCTTGAAGATCTATTCAATTTCTGTAGTAGGAAACTCTCACTAAAG 591
Query 590 ACTGTACTAATGCTTGCAGATCAAATGATCAATCGCATTGAGTTTGTCCATCAGAAGTCA 649
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 592 ACTGTACTAATGCTTGCAGATCAAATGATCAATCGCATTGAGTTTGTACATCAGAAGTCA 651
Query 650 TTTCTACATCGGGACATCAAGCCTGACAACTTTCTGATGGGTCTTGGGAGGCGCGCTAAT 709
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 652 TTTCTACATCGGGACATCAAGCCTGACAACTTTCTGATGGGTCTTGGAAGGCGTGCAAAT 711
Query 710 CAGGTATATGTTATCGACTTTGGTCTGGCAAAGAAGTATAGAGACTCAAATCATCAGCAT 769
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 712 CAGGTATACGTCATCGACTTTGGTCTGGCAAAGAAGTACAGAGACTCAAATCATCAGCAT 771
Query 770 ATTCCTTACAGGGAAAACAAAAATTTGACTGGAACTGCTAGATACGCTAGCATGAACACT 829
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 772 ATTCCATATAGGGAAAACAAAAACTTGACTGGAACTGCTAGATACGCTAGCATGAACACT 831
Query 830 CATCTTGGCATTGAACAAAGTCGTAGAGATGATTTGGAGTCACTTGGATTTGTTCTCATG 889
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 832 CACCTTGGCATTGAACAAAGTCGTAGAGATGATTTGGAGTCACTTGGATTCGTTCTCATG 891
Query 890 TACTTCTTAAAAGGAAGTCTTCCTTGGCAAGGACTGAAAGCTGGAAATAAGAAGCAAAAG 949
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 892 TACTTCTTAAAAGGAAGTCTTCCTTGGCAAGGACTGAAAGCTGGCAATAAGAAGCAAAAG 951
Query 950 TATGAGAAAATCAGTGAAAAGAAAGTATCGACATCTATTGAGGCTTTATGCCGAGGTTAT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TATGAGAAAATCAGTGAAAAGAAAGTATCGACATCTATTGAGGCTTTATGCCGAGGTTAT 1011
Query 1010 CCATCTGAATTTGCATCTTATTTCCATTATTGCCGTTCTCTGAGATTCGACGACAAGCCA 1069
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1012 CCATCTGAATTTGCATCTTATTTCCATTATTGCCGTTCTCTGAGATTTGACGACAAGCCA 1071
Query 1070 GACTATGCCTACCTGAAACGGCTTTTCCGTGACCTGTTTATTCGTGAAGGATTCCAGTTT 1129
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1072 GACTATGCCTACCTGAAACGGCTTTTCCGCGACCTGTTTATTCGTGAAGGCTTCCAGTTT 1131
Query 1130 GATTATGTATTTGATTGGACGATCTTGAAGTATCAGCAATCACAGATTTCTACTCCTCCT 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GATTATGTATTTGATTGGACGATCTTGAAGTATCAGCAATCACAGATTTCTACTCCTCCT 1191
Query 1190 CCTCGTCATCATGGTCCAGTAGTTGGGCCAAGCTCTGGCCTCCCCCCTGCCATTACTAGT 1249
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1192 CCTCGTCATCATGGTCCTGTAGTTGGGCCAAGCTCTGCCCTCCCCCCTGCCATTACCAGT 1251
Query 1250 GCTGAGAGGCCATCAGGTGGCGACGAAGCTAGACCTTCTGGCTGGTCATCAGGAATCCCT 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCTGAGAGGCCATCAGGTGGCGACGAAGCTAGACCTTCTGGCTGGTCATCAGGAATCCCT 1311
Query 1310 AGACGAAGTTCTGGACAAATTTTTAACTCAGGAAGCTTAGCTAAACAAAAAGCACCAGTT 1369
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AGACGAAATTCTGGACAAATTTTTAACTCAGGAAGCTTAGCTAAACAAAAAGCACCAGTT 1371
Query 1370 TCAAGTGATCCTGCAATATCTAAAGATGTAGTGTTATCGAGCTCTAGCTTTCTTCGCGCA 1429
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1372 TCAAGTGATCCTGCAATATCTAAAGATGTAGTGTTATCAAGCTCTAGCTTTCTCCGCGCA 1431
Query 1430 ACTGGGTCATCAAGACGTGCTGCTGTATCTAGTAGTCGCGAGGCTGCAGTTCTGGGAACC 1489
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1432 ACTGGGTCATCAAGACGTGCTGCTGTATCCAGTAGTCGCGAAGCTGCAGTTCTGGGAACT 1491
Query 1490 GAGTCTGAGCCATCAAACCCTCAAATCATTGAAGCTGGATCAGGCTCCAATTCAAAGATC 1549
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1492 GATTCTGAGCCATCAAACCCTCAAATCGTTGAAGCTGGATCAGGCTCCAATTCAAAGATC 1551
Query 1550 CCTGTTGGTCGAAGCTCTCCTATTGTCTCATCTGAGATCAACAAGCTATCCTCACCTTCA 1609
|||||| |||||| ||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1552 CCTGTTAGTCGAAACTCACCTATCGTCTCATCTGAGATCAACAAGCTATCATCACCTTCA 1611
Query 1610 AGGGCGACTACTTCAGTCATGAAGAACTATGAGGCTAATCTTAAAGGGATCGAGAGTCTG 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AGGGCGACTACTTCAGTCATGAAGAACTATGAGGCTAATCTTAAAGGGATCGAGAGTCTG 1671
Query 1670 CATTTTTAGTCGTTGGGGCCAGTGAATGATCTTGAAACCCCGGGACAAGTGTAAATTAAA 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 CATTTTTAGTCGTTGGGGCCAGTGAATGATCTTGAAACCCCGGGACAAGTGTAAATTAAA 1731
Query 1730 AGACAAAAGAAAACCTCTCTTAGGCCCTCCCCATGTTTTACGTGCATTTGTGTTCACAGG 1789
||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1732 AGACAAA-GATGACCTCTCTTAGGCCCTCCTCATGTTTTACGTGCATTTGTGTTTACAGG 1790
Query 1790 GAGGGAGACTTTACTTGTGCCTGTAAGCACACACTCAAATAACAAAGATAAGGAAAAGAC 1849
||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 1791 GAGGGAGACTT-----GTGCCTCTAAGCACACACTCTAATAACATAGATAAGGAAAAGAC 1845
Query 1850 TCTGAAGAAGTGATTC-CAGAGAAAGACAAACTCAAA 1885
||||||||||||||| ||||||||||||||||||||
Sbjct 1846 TCTGAAGAAGTGATTTTCAGAGAAAGACAAACTCAAA 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94527626235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5