BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476441
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73110.1 | Symbols: | P-loop containing nucleoside triphosp... 2211 0.0
> AT1G73110.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:27494121-27496878
REVERSE LENGTH=1556
Length=1556
Score = 2211 bits (1197), Expect = 0.0
Identities = 1342/1410 (95%), Gaps = 17/1410 (1%)
Strand=Plus/Plus
Query 66 TACAAGAAAACCCTCTTCGATCGTTTGCTCCAAA----CC-C----GACGTCGGCAAAGT 116
||| ||||||| |||||| ||||||||||| ||| || | |||| |||||||||
Sbjct 127 TACCAGAAAACTCTCTTCAATCGTTTGCTCGAAACCCTCCTCTAATGACGGCGGCAAAGT 186
Query 117 GGCTAATGACGACGGTGGCACAAAGCCGCGGAAGAAGTTATCGGAGCAATCTTCATGGGA 176
|||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 187 GGCTAATGACGATGGTGGCGCAAAGCCGCGGAAGAAGTTGTCGGAGCAATCGTCATGGGA 246
Query 177 AGTTAAAGATTCGGAAGGGAAGGATTATCTCTATAGGCTTGGCGCGGAGTCTGATAATGT 236
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 247 AGTTAAAGATTCAGAAGGGAAGGATTATCTCTATAGGCTTGGCGCGGAATCGGATAATGT 306
Query 237 TAACATAGCCGTTGGGGCACGTAGCGGCATGATCGATGACGTTTTCATTGGAGACTTCCT 296
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 307 TAACATAGCCGTTGGGGCACGAAGCGGCATGATCGATGATGTATTCATTGGAGACTTCCT 366
Query 297 TGGAAAAGATTCTGATATTGTGTTTGATTACCGTCAGAAGGCGACAAGGTCCTTTGAACA 356
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 367 TGGAAAAGATTCTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACA 426
Query 357 TCTTCAAGGGGATTATTACATTGCTCCATCGTTTCTGGATAAAGTTGCGGTGCACATTGT 416
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 427 TCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGGATAAAGTTGCGGTCCACATTGT 486
Query 417 GAAGAACTACCTTGCTCCTTCTCTAAATATAAAAATCCCATTGATCTTAGGTATCTGGGG 476
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 487 GAAGAACTACCTTGCTCCTTCTCTAAATATAAAAATCCCATTGATTTTAGGTATATGGGG 546
Query 477 AGGTAAAGGACAAGGCAAAACGTTTCAGACCGAACTTATTTTCAAAACAATGGGAGTTGA 536
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 547 AGGTAAAGGACAAGGCAAAACATTTCAGACTGAACTTATATTCAAAACAATGGGAGTTGA 606
Query 537 ACCGGTTATAATGTCTGCAGGGGAGTTGGAATCTGATAGAGCTGGGGAACCGGGAAGACT 596
||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 607 ACCAGTTATAATGTCTGCAGGAGAGTTGGAATCTGATAGAGCTGGTGAACCGGGGAGACT 666
Query 597 CATACGTGACCGCTATCGAACAGCTTCACAAGTCATTCAGAATCAAGGGAAGATGAGTGT 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 667 CATACGTGACCGCTATCGAACAGCTTCACAAGTCATTCAGAATCAAGGAAAGATGAGTGT 726
Query 657 TCTCATGATCAATGATATCGATGCTGGCCTTGGTAGATTTGGGGAAACGCAAATGACAGT 716
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TCTCATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGGGGAAACGCAAATGACAGT 786
Query 717 AAACAACCAGATAGTTGTTGGTACTCTGATGAATCTTGCGGATAATCCTACAAGGGTAAG 776
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 787 AAACAACCAGATAGTTGTTGGTACCCTGATGAATCTTGCGGATAATCCTACAAGGGTAAG 846
Query 777 TGTGGGGCAAGAATGGAGAGAAGCTGACATTGTAAACAGAGTTCCTCTTATTGTCACAGG 836
||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 847 TGTAGGACAAGAATGGAGAGAAGCTGACATGGTAAACAGAGTTCCTCTAATTGTCACAGG 906
Query 837 GAATGATTTCTCTACACTGTATGCTCCACTGATCCGTGAAGGAAGAATGGAGAAGTTCTA 896
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GAACGATTTCTCTACACTGTATGCTCCACTGATCCGTGAAGGAAGAATGGAGAAGTTCTA 966
Query 897 CTGGCAGCCAACTCGTGAAGATATCGTGAACATTGTTAGCAGAATGTACGAGAAAGACGG 956
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 967 CTGGCAGCCAACTCGTGAAGATATCGTAAACATTGTTAGCAGAATGTACGAGAAAGATGG 1026
Query 957 TATATCGCGGAAAGATGTTATAAGCATTGTAGATAAGTTTCCAAATCAAGCACTTGACTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 TATATCGCGGAAAGATGTTATAAGCATTGTAGATAAGTTTCCAAATCAAGCACTTGACTT 1086
Query 1017 CTATGGAGCTCTGAGGTCACGCACATATGATAGATCTATCCTCAAGTGGGTAGATGAAGC 1076
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1087 CTATGGAGCTTTGAGGTCACGCACATATGATAGGTCTATCCTCAAGTGGGTAGATGAAGC 1146
Query 1077 TGGAGGAATGGAGACTCTAGGGAAAATTCTTCTCAGACGTAAAAAGACCAAAGAGGTTCC 1136
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1147 TGGAGGAATGGAGACTCTAGGGAAAGTTCTTCTCAGACGTAAAAAGACCCAAGAGGTTCC 1206
Query 1137 TCAATTCACTCCCCCTGAGCAAACGGTGGAAGCATTGCTGGAATCAGGGTACTCACTCAT 1196
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TCAATTCACTGCCCCTGAGCAAACGGTGGAAGCATTGCTGGAATCAGGGTACTCACTCAT 1266
Query 1197 AAATGAACAAAAACTTATTATGGAAACAAAGCTTTCCAAGGAGTACATGAAGAACATGGA 1256
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 AAATGAACAGAAACTTATTATGGAAACAAAGCTTTCCAAGGAGTACATGAAGAACATGGA 1326
Query 1257 CGATTAATACCAAACAAACATCAATTCTTTTTCATTCTTATCGTGACTTTCGAGGAACAC 1316
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1327 CGATTGATACCAAACAAACATCAATT-TTTTTCATTCTTAAAGTGACTTTCGAGGAACAC 1385
Query 1317 TGAGCTGAATCCTGATAAGTTGTTACAAAAGCTTAAAAATAT-AACCGAATCACTCTATT 1375
| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1386 TCAGCTGAATCCTGATAAGTTGTTACAAAAGCTTAAAAAGATTAACCGAATCACTCTAT- 1444
Query 1376 AGAGTTTGTTTTTACTAAAACCATGAGCATT--GAACCTAAAGCCGATGTGGTGCCAATA 1433
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1445 AGAGTTTGTTTATACTAAAACCATGAGCATTTTGAACCTAAAGCCGATGTGGTGCTAATA 1504
Query 1434 CAGAA-CAAT-TGATTAGATGTGTATGCAT 1461
|| || |||| | |||||||||||||||||
Sbjct 1505 CATAAACAATAT-ATTAGATGTGTATGCAT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5